Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7982600.1

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 356

Gene Structure 355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7982600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 355 bp

atgggtgggtcacgggtgagcagtgctgtgttggatatgaagccccactcggctgctacttttttgcaagtcagcaaacaatccaatccaggagcagggttaggggaaattcatcatttcacattgctgaaatgggcctcctctgataatggaaatggagctccacatagagatgcgagtccacagctaagacaaagaaaggacaaggatggagattcagctccagttacagctgaagatgattatcaacatcaacttcagaaggagcggtttaaatcactttcggtgtttggcgctttggtttcccccaagctacgggcggctcagctctcattcgaaactgcactcgaagcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.73

Weight (kDa)

8.1

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	268
AciI	CCGC	2 cut(s)	268, 320
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	2 cut(s)	242, 255
AfiI	CCNNNNNNNGG	2 cut(s)	95, 315
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	6 cut(s)	161, 187, 221, 233, 313, 328
AluI	AGCT	6 cut(s)	161, 187, 221, 233, 313, 328
Alw21I	GWGCWC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	2 cut(s)	54, 321
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	2 cut(s)	55, 322
Bme1390I	CCNGG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 315
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	95, 315
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	95, 315
BsnI	GGCC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	2 cut(s)	268, 320
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	188, 324
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	188, 324
DraI	TTTAAA	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	242, 255
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	163
FaiI	YATR	2 cut(s)	38, 168
Fnu4HI	GCNGC	2 cut(s)	54, 321
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	54, 321
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	54, 321
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	178, 215
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	145, 261
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	67, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	188, 324
HspAI	GCGC	1 cut(s)	294
LmnI	GCTCC	5 cut(s)	92, 158, 166, 226, 265
LpnPI	CCDG	4 cut(s)	75, 81, 102, 237
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	163
MaeIII	GTNAC	2 cut(s)	9, 226
MbiI	CCGCTC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	2 cut(s)	148, 151
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	350
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	55, 322
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	135
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	54, 321
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	6 cut(s)	163, 189, 223, 235, 315, 330
SfaNI	GCATC	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	268, 320
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	88
TaqI	TCGA	2 cut(s)	336, 348
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	2 cut(s)	53, 101
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.