MD02G1098700.v1.1

coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0004414
Physical Location & Seq
Reverse (-)
7821923 .. 7825676
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1098700.v1.1.491

Sequence Viewer

Length: 942 bp
ATGGAAGAAGAACCTAAATTGCAGAACTTGGAAGAAGACGACCCTAAATCACAAAGCTTGGAAGAACAAGCCAATAACGCCCCGAGCTTGAAAGAAGGCTCTATGTCACAGAGCTTAGAAGAAGACCCCACACCGCACAGCTTGAAAGAACCTAAATTACAGAGCTTGGAAAAAGGAGGCCCTAAATCACAGAGCTTGAAAGAAGACTATAAATCGCAGAATGTGGAAGGAGACTCTAAATCCCAGAGCTTGAAAGAAGACCCTAAATCACTCAGCTTGGAAGAAAACCCTAAATTACTCAGCTTGGAAGAAAACCCTAAATCACTCAGCTTGGAAGAAGACCCTAAATCACTGAGCTTGGAAGGACGAGATAAAATTGCATTCTCTGAATTGAATGAAAATTCATTGCAATTCCTGGATTCAATAGACGGGTATTTAACCCTATTGGATTCACTGTCCTGGACACTTCGGCAGGGGTGGTTGCAATTAGCAAGTGCTCGACATTCTATGGGTGAGTCATGCGTGAGCAGTGCTTTGTTGGACCTGAAATCGCACAATGCAAGTACATTTCTGCAAGTAACCCAGCAATCTGATACTGAAACAGAGCAAATTCATCATTTTACATTGCGCAAATGGGCATCCTCCGACAATGACAATGGAGCTCCACTTATGAATATGAGTCCACAGATACGACAACGAAAGGATAAGGATGGACCTCCACCCCCACTTAAAGCTGAAACTGCTCACCAACATCAACTTCAGAAGGAGCGGACTAAATCACTGTTGATGTTTGGTGGTTTGGTTTCGCCGAAGCTACGGGCAGCACAACTCTCATTTGAATCTGCACTTGACGCACTTGTAGAGATTGCCAACATGCGTTCTTTGATGCTTTCCATGTTTGATAAGGTCAGGGAAGAATTGGAGGCTGCCGAAGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

34.97

Weight (kDa)

4.9

Isoelectric Point (pI)

60.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vma22_CCDC115 PF21730 133 - 281 5.1e-12 Vma22/CCDC115
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 629
AccBSI CCGCTC 1 cut(s) 769
AciI CCGC 2 cut(s) 134, 769
AcsI RAATTY 2 cut(s) 400, 609
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 1 cut(s) 565
AgsI TTSAA 7 cut(s) 91, 145, 199, 253, 394, 423, 839
AjnI CCWGG 2 cut(s) 414, 458
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
Alw21I GWGCWC 2 cut(s) 499, 664
Alw26I GTCTC 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 821, 926
ApoI RAATTY 2 cut(s) 400, 609
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 3 cut(s) 179, 541, 713
AsuHPI GGTGA 2 cut(s) 524, 737
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 541, 713
BanII GRGCYC 1 cut(s) 664
BbsI GAAGAC 5 cut(s) 42, 129, 210, 264, 345
Bbv12I GWGCWC 2 cut(s) 499, 664
BbvI GCAGC 2 cut(s) 833, 913
BccI CCATC 1 cut(s) 704
BciT130I CCWGG 2 cut(s) 416, 460
BcoDI GTCTC 1 cut(s) 225
BisI GCNGC 2 cut(s) 822, 927
BlsI GCNGC 2 cut(s) 823, 928
Bme1390I CCNGG 2 cut(s) 416, 460
Bme18I GGWCC 2 cut(s) 541, 713
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 179, 541, 713
BmrFI CCNGG 2 cut(s) 416, 460
BmsI GCATC 2 cut(s) 647, 876
BpiI GAAGAC 5 cut(s) 42, 129, 210, 264, 345
Bse3DI GCAATG 2 cut(s) 404, 623
BseBI CCWGG 2 cut(s) 416, 460
BseGI GGATG 2 cut(s) 638, 715
BseMI GCAATG 2 cut(s) 404, 623
BseMII CTCAG 4 cut(s) 286, 313, 340, 344
BseXI GCAGC 2 cut(s) 833, 913
BseYI CCCAGC 1 cut(s) 582
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 499, 664
BsiHKCI CYCGRG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 499, 664
BspACI CCGC 2 cut(s) 134, 769
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 4 cut(s) 285, 312, 339, 345
BsrBI CCGCTC 1 cut(s) 769
BsrDI GCAATG 2 cut(s) 404, 623
Bst2UI CCWGG 2 cut(s) 416, 460
Bst4CI ACNGT 2 cut(s) 456, 783
BstDEI CTNAG 5 cut(s) 115, 272, 299, 326, 353
BstF5I GGATG 2 cut(s) 638, 715
BstHHI GCGC 1 cut(s) 630
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 4 cut(s) 77, 740, 851, 932
BstNI CCWGG 2 cut(s) 416, 460
BstNSI RCATGY 1 cut(s) 877
BstSCI CCNGG 2 cut(s) 414, 458
BstV1I GCAGC 2 cut(s) 833, 913
BstV2I GAAGAC 5 cut(s) 42, 129, 210, 264, 345
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 2 cut(s) 638, 715
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 4 cut(s) 350, 452, 535, 779
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 3 cut(s) 179, 541, 713
CseI GACGC 1 cut(s) 860
Csp6I GTAC 1 cut(s) 564
CviAII CATG 3 cut(s) 519, 874, 895
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 5 cut(s) 115, 272, 299, 326, 353
Ecl136II GAGCTC 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 541, 713
Eco53kI GAGCTC 1 cut(s) 662
Eco57I CTGAAG 1 cut(s) 743
Eco88I CYCGRG 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 662
EcoO109I RGGNCCY 1 cut(s) 179
EcoRII CCWGG 2 cut(s) 414, 458
EcoT38I GRGCYC 1 cut(s) 664
FaeI CATG 3 cut(s) 522, 877, 898
FaiI YATR 8 cut(s) 104, 210, 509, 520, 671, 677, 875, 896
FatI CATG 3 cut(s) 518, 873, 894
Fnu4HI GCNGC 2 cut(s) 822, 927
FokI GGATG 2 cut(s) 625, 722
FriOI GRGCYC 1 cut(s) 664
Fsp4HI GCNGC 2 cut(s) 822, 927
FspI TGCGCA 1 cut(s) 629
GlaI GCGC 1 cut(s) 629
GluI GCNGC 2 cut(s) 822, 927
GsaI CCCAGC 1 cut(s) 586
HaeIII GGCC 1 cut(s) 180
HgaI GACGC 1 cut(s) 860
HhaI GCGC 1 cut(s) 630
Hin1II CATG 3 cut(s) 522, 877, 898
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 6 cut(s) 233, 419, 449, 515, 679, 839
HphI GGTGA 2 cut(s) 524, 737
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 4 cut(s) 388, 592, 646, 762
Hpy8I GTNNAC 1 cut(s) 683
HpyAV CCTTC 4 cut(s) 89, 221, 356, 757
HpyCH4III ACNGT 2 cut(s) 456, 783
HpyCH4V TGCA 7 cut(s) 22, 380, 409, 484, 560, 574, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 740, 851, 932
HpyF3I CTNAG 5 cut(s) 115, 272, 299, 326, 353
Hsp92II CATG 3 cut(s) 522, 877, 898
HspAI GCGC 1 cut(s) 628
LmnI GCTCC 3 cut(s) 659, 667, 766
LpnPI CCDG 9 cut(s) 257, 401, 428, 445, 458, 472, 557, 596, 895
Lsp1109I GCAGC 2 cut(s) 833, 913
LweI GCATC 2 cut(s) 647, 876
MaeIII GTNAC 2 cut(s) 105, 577
MbiI CCGCTC 1 cut(s) 769
MhlI GDGCHC 2 cut(s) 499, 664
MlyI GAGTC 3 cut(s) 227, 524, 688
MmeI TCCRAC 2 cut(s) 519, 669
MnlI CCTC 4 cut(s) 170, 652, 726, 916
MseI TTAA 2 cut(s) 437, 729
MspR9I CCNGG 2 cut(s) 416, 460
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 2 cut(s) 416, 460
MwoI GCNNNNNNNGC 4 cut(s) 77, 740, 851, 932
NlaIII CATG 3 cut(s) 522, 877, 898
NmuCI GTSAC 1 cut(s) 105
NsbI TGCGCA 1 cut(s) 629
NspI RCATGY 1 cut(s) 877
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 419, 449, 839
PfoI TCCNGGA 2 cut(s) 414, 458
PkrI GCNGC 2 cut(s) 823, 928
PleI GAGTC 3 cut(s) 227, 523, 687
PpsI GAGTC 3 cut(s) 227, 523, 687
Psp124BI GAGCTC 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 414, 458
PspFI CCCAGC 1 cut(s) 582
PspGI CCWGG 2 cut(s) 414, 458
PspPI GGNCC 3 cut(s) 179, 541, 713
PsrI GAACNNNNNNTAC 2 cut(s) 141, 173
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
SacI GAGCTC 1 cut(s) 664
SaqAI TTAA 2 cut(s) 437, 729
SatI GCNGC 2 cut(s) 822, 927
Sau96I GGNCC 3 cut(s) 179, 541, 713
SchI GAGTC 3 cut(s) 227, 524, 688
ScrFI CCNGG 2 cut(s) 416, 460
SduI GDGCHC 2 cut(s) 499, 664
SfaNI GCATC 2 cut(s) 647, 876
SinI GGWCC 2 cut(s) 541, 713
SsiI CCGC 2 cut(s) 134, 769
SstI GAGCTC 1 cut(s) 664
StyD4I CCNGG 2 cut(s) 414, 458
TaaI ACNGT 2 cut(s) 456, 783
TaqI TCGA 1 cut(s) 499
TatI WGTACW 1 cut(s) 563
TfiI GAWTC 3 cut(s) 419, 449, 839
Tru1I TTAA 2 cut(s) 437, 729
Tru9I TTAA 2 cut(s) 437, 729
TscAI CASTG 4 cut(s) 357, 459, 535, 786
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 2 cut(s) 821, 926
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 4 cut(s) 393, 411, 602, 686
TspRI CASTG 4 cut(s) 357, 459, 535, 786
VpaK11BI GGWCC 2 cut(s) 541, 713
XapI RAATTY 2 cut(s) 400, 609
XceI RCATGY 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.