Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007602.1

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Reverse (-)

48212 .. 49234

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007602.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggaagcacagagcttgaaagaggccaatcctaaattgcagagcttggaagtagaccctaaatcaaagggcttggaagaagaagatactaaattacagagcttgaaagaagacggttctaaatcactagaagaccctaaatcacagagcttgaaagaagaagaccataaatcacagcaattgaaagaagaggaatgtaagtcgcacaactcagaagaagaccttaagttaaacagcttggaagaagaccctaaatcgcagagcttgaaagaagaagaccctaaattacagagcttggaagaggaagagcctaaatcacagagcttgaaagaagaaggacgagatagcttgggagaccctaaattcaatgaaaatgcattgcaattcctggattcaatggatgagtatataaccgtaatggattcattgtcttggacacttcggcagggatggctgcaactagcgagtgcgcgccattcaatgggtgggtcgcgggtgagcagtgtggtgttggatatgaagccccactcagctgctacttttttgcaagtcagcaaacaatccaatccaggagcagggttaggggaaattcatcattttacattgctgaaatgggcctcgtcggataatggaaatggagctccacatagagataaggagcggtttcaatcactttcggtgtttggcgctttggtttcccccaagctacaggcggctcagctctcattcgaaactgcactggaagcactagtagagattgctaacatgcgatcgttgatgctttccaattttcatgaagtcagaaaagaaatggaatcagcaaatggcaaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.07

Weight (kDa)

4.98

Isoelectric Point (pI)

63.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	2 cut(s)	472, 493
AciI	CCGC	3 cut(s)	493, 661, 713
AcsI	RAATTY	2 cut(s)	362, 588
AfiI	CCNNNNNNNGG	2 cut(s)	481, 575
AflII	CTTAAG	1 cut(s)	224
AhlI	ACTAGT	1 cut(s)	748
AjnI	CCWGG	2 cut(s)	387, 568
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	1 cut(s)	348
AoxI	GGCC	2 cut(s)	24, 615
ApeKI	GCWGC	2 cut(s)	454, 533
ApoI	RAATTY	2 cut(s)	362, 588
AspLEI	GCGC	3 cut(s)	472, 474, 689
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	1 cut(s)	508
AsuII	TTCGAA	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	643
BbsI	GAAGAC	6 cut(s)	117, 138, 168, 225, 252, 282
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	441, 520
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	2 cut(s)	389, 570
BcoDI	GTCTC	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	748
BfaI	CTAG	3 cut(s)	128, 461, 749
BfmI	CTRYAG	1 cut(s)	707
BfoI	RGCGCY	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	3 cut(s)	455, 534, 714
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	3 cut(s)	456, 535, 715
Bme1390I	CCNGG	2 cut(s)	389, 570
BmgT120I	GGNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	389, 570
BmsI	GCATC	1 cut(s)	768
BpiI	GAAGAC	6 cut(s)	117, 138, 168, 225, 252, 282
Bpu1102I	GCTNAGC	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 575
Bse1I	ACTGG	1 cut(s)	744
Bse3DI	GCAATG	2 cut(s)	377, 602
BseBI	CCWGG	2 cut(s)	389, 570
BseGI	GGATG	2 cut(s)	406, 455
BseLI	CCNNNNNNNGG	2 cut(s)	481, 575
BseMI	GCAATG	2 cut(s)	377, 602
BseMII	CTCAG	3 cut(s)	225, 543, 731
BseNI	ACTGG	1 cut(s)	744
BsePI	GCGCGC	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	441, 520
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	2 cut(s)	472, 493
Bsh1285I	CGRYCG	1 cut(s)	773
BshFI	GGCC	2 cut(s)	26, 617
BsiEI	CGRYCG	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	643
BslI	CCNNNNNNNGG	2 cut(s)	481, 575
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	26, 617
Bso31I	GGTCTC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	1 cut(s)	770
Bsp1720I	GCTNAGC	1 cut(s)	717
BspACI	CCGC	3 cut(s)	493, 661, 713
BspANI	GGCC	2 cut(s)	26, 617
BspCNI	CTCAG	3 cut(s)	224, 542, 730
BspFNI	CGCG	2 cut(s)	472, 493
BspHI	TCATGA	1 cut(s)	793
BspQI	GCTCTTC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	729
BspTI	CTTAAG	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	661
BsrDI	GCAATG	2 cut(s)	377, 602
BsrI	ACTGG	1 cut(s)	744
BssHII	GCGCGC	1 cut(s)	470
BssMI	GATC	1 cut(s)	770
Bst2UI	CCWGG	2 cut(s)	389, 570
Bst4CI	ACNGT	2 cut(s)	116, 415
Bst6I	CTCTTC	3 cut(s)	183, 294, 300
BstAFI	CTTAAG	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	3 cut(s)	211, 529, 717
BstF5I	GGATG	2 cut(s)	406, 455
BstFNI	CGCG	2 cut(s)	472, 493
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	3 cut(s)	472, 474, 689
BstKTI	GATC	1 cut(s)	773
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	770
BstMCI	CGRYCG	1 cut(s)	773
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 743
BstNI	CCWGG	2 cut(s)	389, 570
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	387, 568
BstSFI	CTRYAG	1 cut(s)	707
BstUI	CGCG	2 cut(s)	472, 493
BstV1I	GCAGC	2 cut(s)	441, 520
BstV2I	GAAGAC	6 cut(s)	117, 138, 168, 225, 252, 282
BsuRI	GGCC	2 cut(s)	26, 617
BtsCI	GGATG	2 cut(s)	406, 455
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	508, 737
Cac8I	GCNNGC	1 cut(s)	472
CciI	TCATGA	1 cut(s)	793
CfoI	GCGC	3 cut(s)	472, 474, 689
Cfr13I	GGNCC	1 cut(s)	615
CviAII	CATG	2 cut(s)	766, 794
DdeI	CTNAG	3 cut(s)	211, 529, 717
DpnI	GATC	1 cut(s)	772
DpnII	GATC	1 cut(s)	770
Eam1104I	CTCTTC	3 cut(s)	183, 294, 300
EarI	CTCTTC	3 cut(s)	183, 294, 300
Ecl136II	GAGCTC	1 cut(s)	641
Eco24I	GRGCYC	1 cut(s)	643
Eco31I	GGTCTC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	387, 568
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	643
FaeI	CATG	2 cut(s)	769, 797
FaiI	YATR	7 cut(s)	168, 408, 410, 518, 648, 767, 795
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	2 cut(s)	765, 793
FauI	CCCGC	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	455, 534, 714
FokI	GGATG	2 cut(s)	413, 462
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	3 cut(s)	455, 534, 714
FspBI	CTAG	3 cut(s)	128, 461, 749
GlaI	GCGC	3 cut(s)	471, 473, 688
GluI	GCNGC	3 cut(s)	455, 534, 714
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	26, 617
HhaI	GCGC	3 cut(s)	472, 474, 689
Hin1II	CATG	2 cut(s)	769, 797
Hin6I	GCGC	3 cut(s)	470, 472, 687
HinP1I	GCGC	3 cut(s)	470, 472, 687
HinfI	GANTC	3 cut(s)	392, 422, 815
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	214, 625, 803
Hpy188III	TCNNGA	1 cut(s)	794
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	116, 415
HpyCH4V	TGCA	6 cut(s)	40, 377, 382, 457, 547, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 743
HpyF3I	CTNAG	3 cut(s)	211, 529, 717
Hsp92II	CATG	2 cut(s)	769, 797
HspAI	GCGC	3 cut(s)	470, 472, 687
Kzo9I	GATC	1 cut(s)	770
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	4 cut(s)	572, 638, 646, 658
LpnPI	CCDG	8 cut(s)	374, 401, 431, 555, 561, 582, 695, 725
Lsp1109I	GCAGC	2 cut(s)	441, 520
LweI	GCATC	1 cut(s)	768
MaeI	CTAG	3 cut(s)	128, 461, 749
MalI	GATC	1 cut(s)	772
MbiI	CCGCTC	1 cut(s)	661
MboI	GATC	1 cut(s)	770
MfeI	CAATTG	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	8 cut(s)	35, 92, 179, 284, 362, 383, 588, 787
MmeI	TCCRAC	2 cut(s)	492, 603
MnlI	CCTC	4 cut(s)	16, 184, 295, 628
Mph1103I	ATGCAT	1 cut(s)	379
MseI	TTAA	2 cut(s)	225, 230
MspA1I	CMGCKG	1 cut(s)	533
MspCI	CTTAAG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	389, 570
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	389, 570
MvnI	CGCG	2 cut(s)	472, 493
MwoI	GCNNNNNNNGC	2 cut(s)	451, 743
NdeII	GATC	1 cut(s)	770
NlaIII	CATG	2 cut(s)	769, 797
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	769
NspV	TTCGAA	1 cut(s)	729
PagI	TCATGA	1 cut(s)	793
PauI	GCGCGC	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	392, 422, 815
PflMI	CCANNNNNTGG	1 cut(s)	481
PfoI	TCCNGGA	2 cut(s)	387, 568
PkrI	GCNGC	3 cut(s)	456, 535, 715
Ple19I	CGATCG	1 cut(s)	773
Psp124BI	GAGCTC	1 cut(s)	643
Psp6I	CCWGG	2 cut(s)	387, 568
PspGI	CCWGG	2 cut(s)	387, 568
PspPI	GGNCC	1 cut(s)	615
PteI	GCGCGC	1 cut(s)	470
PvuI	CGATCG	1 cut(s)	773
PvuII	CAGCTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	225, 230
SatI	GCNGC	3 cut(s)	455, 534, 714
Sau3AI	GATC	1 cut(s)	770
Sau96I	GGNCC	1 cut(s)	615
ScrFI	CCNGG	2 cut(s)	389, 570
SduI	GDGCHC	1 cut(s)	643
SfaNI	GCATC	1 cut(s)	768
SfcI	CTRYAG	1 cut(s)	707
SfuI	TTCGAA	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SpeI	ACTAGT	1 cut(s)	748
Sse9I	AATT	8 cut(s)	35, 92, 179, 284, 362, 383, 588, 787
SsiI	CCGC	3 cut(s)	493, 661, 713
SspMI	CTAG	3 cut(s)	128, 461, 749
SstI	GAGCTC	1 cut(s)	643
StyD4I	CCNGG	2 cut(s)	387, 568
TaaI	ACNGT	2 cut(s)	116, 415
TaqI	TCGA	1 cut(s)	729
TasI	AATT	8 cut(s)	35, 92, 179, 284, 362, 383, 588, 787
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	3 cut(s)	392, 422, 815
Tru1I	TTAA	2 cut(s)	225, 230
Tru9I	TTAA	2 cut(s)	225, 230
TscAI	CASTG	2 cut(s)	508, 744
TseI	GCWGC	2 cut(s)	454, 533
TspDTI	ATGAA	6 cut(s)	384, 414, 533, 581, 782, 810
TspRI	CASTG	2 cut(s)	508, 744
Van91I	CCANNNNNTGG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	224
XapI	RAATTY	2 cut(s)	362, 588
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	3 cut(s)	128, 461, 749
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.