Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Forward (+)

33525774 .. 33526217

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG295200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGTGGGTCGCGGGTGAGCAGTGCGGTGTTGGATATGAAGCCCCACTCAGCTGCTACTTTTTTGCAAGTCAGCAAACAATCCAATCCAGGAGTAGGGTTAGGGGAAATTCATCATTTTACATTGCTGAAATGGGCCTCATCGGATAATGGAAATGGAGCTCCACATAGAGATGTGAGTCCGCAGCAAAGACAAAGAAAGGACAAGGGTGGAGATCCAGCCCCTGTTACAGCTGAAGATGACCATCATCAGCAACTTCAGAAGGAGCAGTTTAAATCACTTTCGGTGTTTGGCGCTTTGGTTTCCCCCAAGCTACGGGCGGCTCAGCTCTCATTCGAAACTGCGCTGGAAGCACTTGTAGAGATTGCTAACATGCGATCGTTGATGCTTTCCAATTTTCATGAAGTCAGAAAAGAAATGGAATCAGCAAATGGCAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.04

Weight (kDa)

8.11

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	4 cut(s)	13, 26, 182, 320
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	2 cut(s)	242, 255
AfiI	CCNNNNNNNGG	2 cut(s)	95, 315
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	5 cut(s)	53, 161, 233, 313, 328
AluI	AGCT	5 cut(s)	53, 161, 233, 313, 328
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	53, 184
ApoI	RAATTY	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	296, 346
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	40, 196
BccI	CCATC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	3 cut(s)	54, 185, 321
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	3 cut(s)	55, 186, 322
Bme1390I	CCNGG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 315
Bse3DI	GCAATG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	95, 315
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	63, 338
BseXI	GCAGC	2 cut(s)	40, 196
Bsh1236I	CGCG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	95, 315
BsnI	GGCC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	214, 377
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	4 cut(s)	13, 26, 182, 320
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	62, 337
BspFNI	CGCG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	400
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	122
BssMI	GATC	2 cut(s)	214, 377
Bst2UI	CCWGG	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	49, 324
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	296, 346
BstKTI	GATC	2 cut(s)	217, 380
BstMBI	GATC	2 cut(s)	214, 377
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	40, 196
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	2 cut(s)	296, 346
Cfr13I	GGNCC	1 cut(s)	135
CviAII	CATG	2 cut(s)	373, 401
CviJI	RGCY	9 cut(s)	43, 53, 137, 161, 221, 233, 313, 323, 328
CviKI_1	RGCY	9 cut(s)	43, 53, 137, 161, 221, 233, 313, 323, 328
DdeI	CTNAG	2 cut(s)	49, 324
DpnI	GATC	2 cut(s)	216, 379
DpnII	GATC	2 cut(s)	214, 377
DraI	TTTAAA	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	242, 255
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	2 cut(s)	376, 404
FaiI	YATR	4 cut(s)	38, 168, 374, 402
FatI	CATG	2 cut(s)	372, 400
FauI	CCCGC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	54, 185, 321
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	54, 185, 321
GlaI	GCGC	2 cut(s)	295, 345
GluI	GCNGC	3 cut(s)	54, 185, 321
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	296, 346
Hin1II	CATG	2 cut(s)	376, 404
Hin6I	GCGC	2 cut(s)	294, 344
HinP1I	GCGC	2 cut(s)	294, 344
HinfI	GANTC	2 cut(s)	178, 422
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	145, 261, 410
Hpy188III	TCNNGA	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	256
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	49, 324
Hsp92II	CATG	2 cut(s)	376, 404
HspAI	GCGC	2 cut(s)	294, 344
Kzo9I	GATC	2 cut(s)	214, 377
LmnI	GCTCC	3 cut(s)	158, 166, 265
LpnPI	CCDG	5 cut(s)	75, 102, 231, 237, 332
Lsp1109I	GCAGC	2 cut(s)	40, 196
LweI	GCATC	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	216, 379
MboI	GATC	2 cut(s)	214, 377
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	108, 394
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	1 cut(s)	148
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	53, 233
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	2 cut(s)	214, 377
NlaIII	CATG	2 cut(s)	376, 404
NspI	RCATGY	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	336
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	55, 186, 322
Ple19I	CGATCG	1 cut(s)	380
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	380
PvuII	CAGCTG	2 cut(s)	53, 233
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	54, 185, 321
Sau3AI	GATC	2 cut(s)	214, 377
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	5 cut(s)	55, 163, 235, 315, 330
SfaNI	GCATC	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	2 cut(s)	108, 394
SsiI	CCGC	4 cut(s)	13, 26, 182, 320
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	88
TaqI	TCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	108, 394
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	2 cut(s)	53, 184
TspDTI	ATGAA	4 cut(s)	53, 101, 389, 417
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.