Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Reverse (-)

377269 .. 378159

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000084.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ctgagcttgaaagtagaccctaaatcaaagggcttggaagaagaagatactaaattacagagcttgaaagaagacggttctaaatcactagaagaccctaaatcacagagcttgaaagaagaagaccataaatcacagagattgaaagaagaggaatgtaagtcgcacagctcagaagaagacctgacgtcaaacagcttggaagaagaccctaaatcgcagagcttgaaagaagaagaccctaaattacagagcttggaagaggaagagcctaaatcacagagcttgaaagaagaaggacgagatagcttgggagaccctaaattcaatgaaaatgcattgcaattcctggattcaatggatgggtatataaccctaatggattcattgtcttggacacttcggcagggatgcctgcaactagcgagtgcgcgccatgcaatgggtgggtcgcgggtgagcagtgcggtgttggatatgaagccccactcagctgctacttttttgcaagtcagcaaacaatccaatccaggagcagggttaggggaaattcatcattttacattgctgaaatgggcctcatcggataatggaaatggagctccacatagagatgtgagtccgcagctaagacaaagaaaggacaaggatggagatccagcccctgttccagctgaagatgaccatcatcagcaactcagaaggagcggtttaaatcactttcggtgtttggctacgggcggctcagctctcattcgaaactgcactggaagcactagtagagattgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.03

Weight (kDa)

5.35

Isoelectric Point (pI)

70.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	2 cut(s)	433, 454
AciI	CCGC	5 cut(s)	454, 467, 623, 708, 741
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	2 cut(s)	323, 549
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	442, 536
AgsI	TTSAA	8 cut(s)	10, 67, 115, 145, 229, 289, 328, 357
AhdI	GACNNNNNGTC	1 cut(s)	187
AhlI	ACTAGT	1 cut(s)	776
AjnI	CCWGG	2 cut(s)	348, 529
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	2 cut(s)	494, 625
ApoI	RAATTY	2 cut(s)	323, 549
AspLEI	GCGC	2 cut(s)	433, 435
AspS9I	GGNCC	1 cut(s)	576
AsuHPI	GGTGA	1 cut(s)	469
AsuII	TTCGAA	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	604
BbsI	GAAGAC	6 cut(s)	78, 99, 129, 186, 213, 243
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	2 cut(s)	481, 637
BccI	CCATC	3 cut(s)	356, 644, 693
BciT130I	CCWGG	2 cut(s)	350, 531
BcoDI	GTCTC	1 cut(s)	309
BcuI	ACTAGT	1 cut(s)	776
BfaI	CTAG	3 cut(s)	89, 422, 777
BisI	GCNGC	3 cut(s)	495, 626, 742
BlpI	GCTNAGC	1 cut(s)	745
BlsI	GCNGC	3 cut(s)	496, 627, 743
Bme1390I	CCNGG	2 cut(s)	350, 531
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	350, 531
BmsI	GCATC	1 cut(s)	401
BpiI	GAAGAC	6 cut(s)	78, 99, 129, 186, 213, 243
Bpu1102I	GCTNAGC	1 cut(s)	745
Bpu14I	TTCGAA	1 cut(s)	757
BsaBI	GATNNNNATC	2 cut(s)	654, 684
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 536
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	3 cut(s)	338, 447, 563
Bse8I	GATNNNNATC	2 cut(s)	654, 684
BseBI	CCWGG	2 cut(s)	350, 531
BseGI	GGATG	3 cut(s)	367, 416, 655
BseJI	GATNNNNATC	2 cut(s)	654, 684
BseLI	CCNNNNNNNGG	2 cut(s)	442, 536
BseMI	GCAATG	3 cut(s)	338, 447, 563
BseMII	CTCAG	4 cut(s)	186, 504, 712, 759
BseNI	ACTGG	1 cut(s)	772
BsePI	GCGCGC	1 cut(s)	431
BseXI	GCAGC	2 cut(s)	481, 637
BsgI	GTGCAG	1 cut(s)	748
Bsh1236I	CGCG	2 cut(s)	433, 454
BshFI	GGCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	604
BslI	CCNNNNNNNGG	2 cut(s)	442, 536
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	578
Bso31I	GGTCTC	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	757
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	1 cut(s)	655
Bsp1720I	GCTNAGC	1 cut(s)	745
BspACI	CCGC	5 cut(s)	454, 467, 623, 708, 741
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	4 cut(s)	185, 503, 711, 758
BspFNI	CGCG	2 cut(s)	433, 454
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	708
BsrDI	GCAATG	3 cut(s)	338, 447, 563
BsrI	ACTGG	1 cut(s)	772
BssHII	GCGCGC	1 cut(s)	431
BssMI	GATC	1 cut(s)	655
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	350, 531
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	3 cut(s)	144, 255, 261
BstACI	GRCGYC	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	2 cut(s)	416, 433
BstDEI	CTNAG	6 cut(s)	2, 172, 490, 629, 698, 745
BstF5I	GGATG	3 cut(s)	367, 416, 655
BstFNI	CGCG	2 cut(s)	433, 454
BstHHI	GCGC	2 cut(s)	433, 435
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 771
BstNI	CCWGG	2 cut(s)	350, 531
BstSCI	CCNGG	2 cut(s)	348, 529
BstUI	CGCG	2 cut(s)	433, 454
BstV1I	GCAGC	2 cut(s)	481, 637
BstV2I	GAAGAC	6 cut(s)	78, 99, 129, 186, 213, 243
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	578
BtsCI	GGATG	3 cut(s)	367, 416, 655
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	469, 765
Cac8I	GCNNGC	2 cut(s)	416, 433
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	2 cut(s)	433, 435
Cfr13I	GGNCC	1 cut(s)	576
CviAII	CATG	1 cut(s)	437
DdeI	CTNAG	6 cut(s)	2, 172, 490, 629, 698, 745
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
DraI	TTTAAA	1 cut(s)	714
DriI	GACNNNNNGTC	1 cut(s)	187
Eam1104I	CTCTTC	3 cut(s)	144, 255, 261
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	3 cut(s)	144, 255, 261
Ecl136II	GAGCTC	1 cut(s)	602
Eco24I	GRGCYC	1 cut(s)	604
Eco31I	GGTCTC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	348, 529
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	604
FaeI	CATG	1 cut(s)	440
FaiI	YATR	6 cut(s)	129, 369, 371, 438, 479, 609
FatI	CATG	1 cut(s)	436
FauI	CCCGC	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	495, 626, 742
FokI	GGATG	3 cut(s)	374, 423, 662
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	3 cut(s)	495, 626, 742
FspBI	CTAG	3 cut(s)	89, 422, 777
GlaI	GCGC	2 cut(s)	432, 434
GluI	GCNGC	3 cut(s)	495, 626, 742
HaeIII	GGCC	1 cut(s)	578
HhaI	GCGC	2 cut(s)	433, 435
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	2 cut(s)	431, 433
HinP1I	GCGC	2 cut(s)	431, 433
HinfI	GANTC	3 cut(s)	353, 383, 619
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	175, 586, 701
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	290, 696
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	6 cut(s)	338, 343, 418, 440, 508, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 771
HpyF3I	CTNAG	6 cut(s)	2, 172, 490, 629, 698, 745
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	2 cut(s)	431, 433
Kzo9I	GATC	1 cut(s)	655
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	533, 599, 607, 705
Lsp1109I	GCAGC	2 cut(s)	481, 637
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	3 cut(s)	89, 422, 777
MaeII	ACGT	1 cut(s)	188
MalI	GATC	1 cut(s)	657
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	1 cut(s)	655
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	5 cut(s)	53, 245, 323, 344, 549
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	3 cut(s)	145, 256, 589
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	1 cut(s)	713
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	2 cut(s)	494, 674
MspR9I	CCNGG	2 cut(s)	350, 531
MvaI	CCWGG	2 cut(s)	350, 531
MvnI	CGCG	2 cut(s)	433, 454
MwoI	GCNNNNNNNGC	2 cut(s)	437, 771
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	1 cut(s)	440
NsiI	ATGCAT	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	757
PauI	GCGCGC	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	353, 383
PflMI	CCANNNNNTGG	1 cut(s)	442
PfoI	TCCNGGA	2 cut(s)	348, 529
PkrI	GCNGC	3 cut(s)	496, 627, 743
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	348, 529
PspGI	CCWGG	2 cut(s)	348, 529
PspPI	GGNCC	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	655
PteI	GCGCGC	1 cut(s)	431
PvuII	CAGCTG	2 cut(s)	494, 674
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	604
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	713
SatI	GCNGC	3 cut(s)	495, 626, 742
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	2 cut(s)	350, 531
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	757
SmiMI	CAYNNNNRTG	1 cut(s)	612
SpeI	ACTAGT	1 cut(s)	776
Sse9I	AATT	5 cut(s)	53, 245, 323, 344, 549
SsiI	CCGC	5 cut(s)	454, 467, 623, 708, 741
SspMI	CTAG	3 cut(s)	89, 422, 777
SstI	GAGCTC	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	348, 529
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	757
TasI	AATT	5 cut(s)	53, 245, 323, 344, 549
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	2 cut(s)	353, 383
Tru1I	TTAA	1 cut(s)	713
Tru9I	TTAA	1 cut(s)	713
TscAI	CASTG	2 cut(s)	469, 772
TseI	GCWGC	2 cut(s)	494, 625
TspDTI	ATGAA	4 cut(s)	345, 375, 494, 542
TspRI	CASTG	2 cut(s)	469, 772
Van91I	CCANNNNNTGG	1 cut(s)	442
XapI	RAATTY	2 cut(s)	323, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	3 cut(s)	89, 422, 777
ZraI	GACGTC	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.