Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002495.1

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Reverse (-)

49608 .. 50612

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002495.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggaagcacagagcttgaaagaggacaatcctaaattgcagagcttggaagaagaccctaaaccaaagggcttggaagaagaagatactaaattacagagcttgaaagaagacagttctaaatcacagagcttgaaagaagaagaccataaatcacagagattgaaagaagaggaatgtaagtcgcacagctcagaagaagacctgacgtcaaacagcttggaagaagaccctaaatcgcagagcttgaaagaagaagaccccaaattacagagcttggaagaggaagagcctaaatcacagagcttgaaagaagaaggactagatagcttgggagaccctagattcaatgaaaatgcattgcaattcctagattcaatggatgggtatttaacactattggattcattgtcttggacacttcggcagggatggctgcaactagcaagtgcgcgccattcaatgggtgggtcacgggtgagcagtgctgtgttggatatgaagccccactcggctgctacttttttgcaagtcagcaaacaatccaatccaggagcagggttaggggaaattcatcatttcacattgctgaaatgggcctcctctgataatggaaatgaagcttcacatagagatgcgagtccacagctaagacaaagaaaggacaaggatggagattcagctccagttacagctgaagatgattatcaacatcaacttcagaaggagcggtttaaatcactttcggtgtttggcgctttggtttcccccaagctacgggcggctcagctctcattcgaaactgcactcgaagcactagtagagattgctaacatgcgatcgttgatgctttccaattttcatgaagtcagaaaagaaatggaatcagcaaatgccaaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.72

Weight (kDa)

4.96

Isoelectric Point (pI)

66.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	730
AccII	CGCG	1 cut(s)	454
AciI	CCGC	2 cut(s)	730, 782
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	2 cut(s)	704, 717
AcyI	GRCGYC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	463, 557, 777
AgsI	TTSAA	9 cut(s)	19, 106, 136, 166, 250, 310, 349, 378, 462
AhdI	GACNNNNNGTC	1 cut(s)	208
AhlI	ACTAGT	1 cut(s)	817
AjnI	CCWGG	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	330
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	436, 515
ApoI	RAATTY	1 cut(s)	570
AspLEI	GCGC	3 cut(s)	454, 456, 758
AspS9I	GGNCC	1 cut(s)	597
AsuHPI	GGTGA	1 cut(s)	490
AsuII	TTCGAA	1 cut(s)	798
BbsI	GAAGAC	6 cut(s)	60, 117, 150, 207, 234, 264
BbvI	GCAGC	2 cut(s)	423, 502
BccI	CCATC	3 cut(s)	377, 426, 665
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	330
BcuI	ACTAGT	1 cut(s)	817
BfaI	CTAG	5 cut(s)	323, 342, 371, 443, 818
BfoI	RGCGCY	1 cut(s)	759
BisI	GCNGC	3 cut(s)	437, 516, 783
BlpI	GCTNAGC	1 cut(s)	786
BlsI	GCNGC	3 cut(s)	438, 517, 784
Bme1390I	CCNGG	1 cut(s)	552
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	625, 837
BpiI	GAAGAC	6 cut(s)	60, 117, 150, 207, 234, 264
BpmI	CTGGAG	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 557, 777
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	2 cut(s)	359, 584
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	552
BseGI	GGATG	3 cut(s)	388, 437, 676
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	3 cut(s)	463, 557, 777
BseMI	GCAATG	2 cut(s)	359, 584
BseMII	CTCAG	2 cut(s)	207, 800
BseNI	ACTGG	1 cut(s)	686
BsePI	GCGCGC	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	423, 502
BsgI	GTGCAG	1 cut(s)	789
Bsh1236I	CGCG	1 cut(s)	454
Bsh1285I	CGRYCG	1 cut(s)	842
BshFI	GGCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	842
BslI	CCNNNNNNNGG	3 cut(s)	463, 557, 777
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	599
Bso31I	GGTCTC	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	798
Bsp143I	GATC	1 cut(s)	839
Bsp1720I	GCTNAGC	1 cut(s)	786
BspACI	CCGC	2 cut(s)	730, 782
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	2 cut(s)	206, 799
BspFNI	CGCG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	862
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	798
BspTNI	GGTCTC	1 cut(s)	330
BsrBI	CCGCTC	1 cut(s)	730
BsrDI	GCAATG	2 cut(s)	359, 584
BsrI	ACTGG	1 cut(s)	686
BssHII	GCGCGC	1 cut(s)	452
BssMI	GATC	1 cut(s)	839
BssNI	GRCGYC	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	3 cut(s)	165, 276, 282
BstACI	GRCGYC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	798
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	3 cut(s)	193, 650, 786
BstF5I	GGATG	3 cut(s)	388, 437, 676
BstFNI	CGCG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	3 cut(s)	454, 456, 758
BstKTI	GATC	1 cut(s)	842
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	839
BstMCI	CGRYCG	1 cut(s)	842
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 812
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	550
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	423, 502
BstV2I	GAAGAC	6 cut(s)	60, 117, 150, 207, 234, 264
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	388, 437, 676
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	454
CciI	TCATGA	1 cut(s)	862
CfoI	GCGC	3 cut(s)	454, 456, 758
Cfr13I	GGNCC	1 cut(s)	597
CviAII	CATG	2 cut(s)	835, 863
DdeI	CTNAG	3 cut(s)	193, 650, 786
DpnI	GATC	1 cut(s)	841
DpnII	GATC	1 cut(s)	839
DraI	TTTAAA	1 cut(s)	736
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	3 cut(s)	165, 276, 282
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	3 cut(s)	165, 276, 282
Eco31I	GGTCTC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	704, 717
EcoRII	CCWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	361
FaeI	CATG	2 cut(s)	838, 866
FaiI	YATR	5 cut(s)	150, 500, 630, 836, 864
FatI	CATG	2 cut(s)	834, 862
Fnu4HI	GCNGC	3 cut(s)	437, 516, 783
FokI	GGATG	3 cut(s)	395, 444, 683
Fsp4HI	GCNGC	3 cut(s)	437, 516, 783
FspBI	CTAG	5 cut(s)	323, 342, 371, 443, 818
GlaI	GCGC	3 cut(s)	453, 455, 757
GluI	GCNGC	3 cut(s)	437, 516, 783
GsuI	CTGGAG	1 cut(s)	669
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	599
HhaI	GCGC	3 cut(s)	454, 456, 758
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	838, 866
Hin6I	GCGC	3 cut(s)	452, 454, 756
HinP1I	GCGC	3 cut(s)	452, 454, 756
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	6 cut(s)	345, 374, 404, 640, 677, 884
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	4 cut(s)	196, 607, 723, 872
Hpy188III	TCNNGA	1 cut(s)	863
Hpy8I	GTNNAC	1 cut(s)	644
HpyAV	CCTTC	2 cut(s)	311, 718
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	6 cut(s)	40, 359, 364, 439, 529, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 812
HpyF3I	CTNAG	3 cut(s)	193, 650, 786
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	838, 866
HspAI	GCGC	3 cut(s)	452, 454, 756
Kzo9I	GATC	1 cut(s)	839
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	554, 688, 727
LpnPI	CCDG	6 cut(s)	218, 413, 537, 543, 564, 699
Lsp1109I	GCAGC	2 cut(s)	423, 502
LweI	GCATC	2 cut(s)	625, 837
MaeI	CTAG	5 cut(s)	323, 342, 371, 443, 818
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	471, 688
MalI	GATC	1 cut(s)	841
MbiI	CCGCTC	1 cut(s)	730
MboI	GATC	1 cut(s)	839
MluCI	AATT	6 cut(s)	35, 92, 266, 365, 570, 856
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	5 cut(s)	16, 166, 277, 610, 613
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	2 cut(s)	392, 735
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	433, 812
NdeII	GATC	1 cut(s)	839
NlaIII	CATG	2 cut(s)	838, 866
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	471
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	798
PagI	TCATGA	1 cut(s)	862
PauI	GCGCGC	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	5 cut(s)	345, 374, 404, 677, 884
PflMI	CCANNNNNTGG	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	438, 517, 784
Ple19I	CGATCG	1 cut(s)	842
PleI	GAGTC	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	597
PteI	GCGCGC	1 cut(s)	452
PvuI	CGATCG	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	695
RseI	CAYNNNNRTG	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	392, 735
SatI	GCNGC	3 cut(s)	437, 516, 783
Sau3AI	GATC	1 cut(s)	839
Sau96I	GGNCC	1 cut(s)	597
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	625, 837
SfuI	TTCGAA	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	633
SpeI	ACTAGT	1 cut(s)	817
Sse9I	AATT	6 cut(s)	35, 92, 266, 365, 570, 856
SsiI	CCGC	2 cut(s)	730, 782
SspMI	CTAG	5 cut(s)	323, 342, 371, 443, 818
StyD4I	CCNGG	1 cut(s)	550
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	798, 810
TasI	AATT	6 cut(s)	35, 92, 266, 365, 570, 856
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	5 cut(s)	345, 374, 404, 677, 884
Tru1I	TTAA	2 cut(s)	392, 735
Tru9I	TTAA	2 cut(s)	392, 735
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	2 cut(s)	436, 515
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	7 cut(s)	366, 396, 515, 563, 633, 851, 879
TspRI	CASTG	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	463
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	5 cut(s)	323, 342, 371, 443, 818
ZraI	GACGTC	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.