Rw7G024870

coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004414
Physical Location & Seq
Forward (+)
30986590 .. 30987471
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024870.1

Sequence Viewer

Length: 783 bp
ATGGAAGCACAGAGCTTGAAAGAGGCCAATCCTAAATTTCAGAGCTTGGAAGTAGACCCTAAATCAAAGGGCTTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACGGTTCTAAATCACAGAGCTTGAAAGAAGAAGACCCTAAATTACAGAGCTTGGAAGAGGAAGAGCCTAAATCACAGAGCTTGAAAGAAGAAGGACGAGATAGCTTGGGAGACCCTAAATTCAATGAAAATGCATTGCAATTCCTGGATTCAATGGATGGGTATATAACCCTAATGGATTCATTGTCTTGGACACTTCGGCAGGGATGGCTGCAACTAGCGAGTGCGCGCCATTCAATGGGTGGGTCGTGGGTGAGCAGTGCGGTGTTGGATATGAAGCCCCACTCAGCTGCTACTTTTTTGCAAGTCAGCAAACAATCCAATCCAGGAGCAGGGTTAGGGGAAATTCATCATTTTACATTGCTGAAATGGGCCTCATCGGATAATGGAAATGGAGCTCCACATAGAGATGTGAGTCCGCAGCTAAGACAAAGAAGGGACAAGGATGGAGATCCAGCCCCTCTTACAGCTGAAGATGACCATCATCAGCAACTTCAGAAGGAGCGGTTTAAATCACTTTTGATGTTTGGCGCTTGGGTTTCCCCCAAGCTACAGGCGCCTCAGCTCTCATTCAAAACTGCGCTGGAAGCACTTGTAGAGATTGCTAACATGCGATCATTGATGCTTTCCAATTTTCATGAAGTCAGAAAAGAAATGGAATCAGCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

29.1

Weight (kDa)

5.35

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vma22_CCDC115 PF21730 80 - 230 3.9e-07 Vma22/CCDC115
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccB7I CCANNNNNTGG 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 616
AccI GTMKAC 1 cut(s) 54
AccII CGCG 1 cut(s) 340
AciI CCGC 3 cut(s) 374, 530, 616
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 3 cut(s) 35, 230, 456
AcuI CTGAAG 2 cut(s) 590, 603
AcyI GRCGYC 1 cut(s) 668
AfiI CCNNNNNNNGG 2 cut(s) 349, 443
AgsI TTSAA 8 cut(s) 19, 106, 136, 196, 235, 264, 348, 685
AjnI CCWGG 2 cut(s) 255, 436
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 557
AoxI GGCC 2 cut(s) 24, 483
ApeKI GCWGC 3 cut(s) 322, 401, 532
ApoI RAATTY 3 cut(s) 35, 230, 456
AspLEI GCGC 5 cut(s) 340, 342, 644, 670, 694
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 376
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 511
BbsI GAAGAC 2 cut(s) 117, 150
Bbv12I GWGCWC 1 cut(s) 511
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 3 cut(s) 309, 388, 544
BccI CCATC 4 cut(s) 263, 312, 551, 600
BciT130I CCWGG 2 cut(s) 257, 438
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 662
BfoI RGCGCY 2 cut(s) 645, 671
BisI GCNGC 3 cut(s) 323, 402, 533
BlsI GCNGC 3 cut(s) 324, 403, 534
Bme1390I CCNGG 2 cut(s) 257, 438
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 669
BmrFI CCNGG 2 cut(s) 257, 438
BmsI GCATC 1 cut(s) 723
BpiI GAAGAC 2 cut(s) 117, 150
Bpu10I CCTNAGC 1 cut(s) 672
BsaBI GATNNNNATC 2 cut(s) 561, 591
BsaHI GRCGYC 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 443
Bse3DI GCAATG 2 cut(s) 245, 470
Bse8I GATNNNNATC 2 cut(s) 561, 591
BseBI CCWGG 2 cut(s) 257, 438
BseGI GGATG 3 cut(s) 274, 323, 562
BseJI GATNNNNATC 2 cut(s) 561, 591
BseLI CCNNNNNNNGG 2 cut(s) 349, 443
BseMI GCAATG 2 cut(s) 245, 470
BseMII CTCAG 2 cut(s) 411, 686
BsePI GCGCGC 1 cut(s) 338
BseXI GCAGC 3 cut(s) 309, 388, 544
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 26, 485
BshNI GGYRCC 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 511
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 2 cut(s) 349, 443
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 2 cut(s) 26, 485
Bso31I GGTCTC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 511
Bsp143I GATC 2 cut(s) 562, 725
BspACI CCGC 3 cut(s) 374, 530, 616
BspANI GGCC 2 cut(s) 26, 485
BspCNI CTCAG 2 cut(s) 410, 685
BspFNI CGCG 1 cut(s) 340
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 1 cut(s) 669
BspPI GGATC 1 cut(s) 557
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 667
BspTNI GGTCTC 1 cut(s) 216
BsrBI CCGCTC 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 245, 470
BssHII GCGCGC 1 cut(s) 338
BssMI GATC 2 cut(s) 562, 725
BssNI GRCGYC 1 cut(s) 668
Bst2UI CCWGG 2 cut(s) 257, 438
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 162, 168
BstACI GRCGYC 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 397, 536, 672
BstF5I GGATG 3 cut(s) 274, 323, 562
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 2 cut(s) 645, 671
BstHHI GCGC 5 cut(s) 340, 342, 644, 670, 694
BstKTI GATC 2 cut(s) 565, 728
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 2 cut(s) 562, 725
BstMWI GCNNNNNNNGC 3 cut(s) 319, 667, 698
BstNI CCWGG 2 cut(s) 257, 438
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 255, 436
BstSFI CTRYAG 1 cut(s) 662
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 309, 388, 544
BstV2I GAAGAC 2 cut(s) 117, 150
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BsuRI GGCC 2 cut(s) 26, 485
BtsCI GGATG 3 cut(s) 274, 323, 562
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 340
CciI TCATGA 1 cut(s) 748
CfoI GCGC 5 cut(s) 340, 342, 644, 670, 694
Cfr13I GGNCC 1 cut(s) 483
CviAII CATG 2 cut(s) 721, 749
DdeI CTNAG 3 cut(s) 397, 536, 672
DinI GGCGCC 1 cut(s) 669
DpnI GATC 2 cut(s) 564, 727
DpnII GATC 2 cut(s) 562, 725
DraI TTTAAA 1 cut(s) 622
Eam1104I CTCTTC 2 cut(s) 162, 168
EarI CTCTTC 2 cut(s) 162, 168
Ecl136II GAGCTC 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 511
Eco31I GGTCTC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 509
Eco57I CTGAAG 2 cut(s) 590, 603
EcoICRI GAGCTC 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 255, 436
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 511
EgeI GGCGCC 1 cut(s) 669
EheI GGCGCC 1 cut(s) 669
FaeI CATG 2 cut(s) 724, 752
FaiI YATR 6 cut(s) 276, 278, 386, 516, 722, 750
FaqI GGGAC 1 cut(s) 563
FatI CATG 2 cut(s) 720, 748
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 323, 402, 533
FokI GGATG 3 cut(s) 281, 330, 569
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 3 cut(s) 323, 402, 533
FspBI CTAG 1 cut(s) 329
GlaI GCGC 5 cut(s) 339, 341, 643, 669, 693
GluI GCNGC 3 cut(s) 323, 402, 533
HaeII RGCGCY 2 cut(s) 645, 671
HaeIII GGCC 2 cut(s) 26, 485
HhaI GCGC 5 cut(s) 340, 342, 644, 670, 694
Hin1I GRCGYC 1 cut(s) 668
Hin1II CATG 2 cut(s) 724, 752
Hin6I GCGC 5 cut(s) 338, 340, 642, 668, 692
HinP1I GCGC 5 cut(s) 338, 340, 642, 668, 692
HinfI GANTC 4 cut(s) 260, 290, 526, 770
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 42, 493, 609, 758
Hpy188III TCNNGA 1 cut(s) 749
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 197, 540, 604
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 245, 250, 325, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 667, 698
HpyF3I CTNAG 3 cut(s) 397, 536, 672
Hsp92I GRCGYC 1 cut(s) 668
Hsp92II CATG 2 cut(s) 724, 752
HspAI GCGC 5 cut(s) 338, 340, 642, 668, 692
KasI GGCGCC 1 cut(s) 667
Kzo9I GATC 2 cut(s) 562, 725
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 4 cut(s) 440, 506, 514, 613
LpnPI CCDG 9 cut(s) 242, 269, 299, 423, 429, 450, 579, 650, 680
Lsp1109I GCAGC 3 cut(s) 309, 388, 544
LweI GCATC 1 cut(s) 723
MaeI CTAG 1 cut(s) 329
MalI GATC 2 cut(s) 564, 727
MbiI CCGCTC 1 cut(s) 616
MboI GATC 2 cut(s) 562, 725
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 8 cut(s) 35, 92, 152, 230, 251, 456, 742, 778
Mly113I GGCGCC 1 cut(s) 668
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 5 cut(s) 16, 163, 496, 582, 681
Mph1103I ATGCAT 1 cut(s) 247
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 2 cut(s) 401, 581
MspR9I CCNGG 2 cut(s) 257, 438
MvaI CCWGG 2 cut(s) 257, 438
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 319, 667, 698
NarI GGCGCC 1 cut(s) 668
NdeII GATC 2 cut(s) 562, 725
NlaIII CATG 2 cut(s) 724, 752
NlaIV GGNNCC 1 cut(s) 669
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 1 cut(s) 724
PagI TCATGA 1 cut(s) 748
PauI GCGCGC 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 260, 290, 770
PflMI CCANNNNNTGG 1 cut(s) 349
PfoI TCCNGGA 2 cut(s) 255, 436
PkrI GCNGC 3 cut(s) 324, 403, 534
PleI GAGTC 1 cut(s) 534
PluTI GGCGCC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 255, 436
PspGI CCWGG 2 cut(s) 255, 436
PspN4I GGNNCC 1 cut(s) 669
PspPI GGNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 562
PteI GCGCGC 1 cut(s) 338
PvuII CAGCTG 2 cut(s) 401, 581
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 3 cut(s) 323, 402, 533
Sau3AI GATC 2 cut(s) 562, 725
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 2 cut(s) 257, 438
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 662
SfoI GGCGCC 1 cut(s) 669
SmiMI CAYNNNNRTG 1 cut(s) 519
Sse9I AATT 8 cut(s) 35, 92, 152, 230, 251, 456, 742, 778
SsiI CCGC 3 cut(s) 374, 530, 616
SspDI GGCGCC 1 cut(s) 667
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 1 cut(s) 511
StyD4I CCNGG 2 cut(s) 255, 436
TaaI ACNGT 1 cut(s) 116
TasI AATT 8 cut(s) 35, 92, 152, 230, 251, 456, 742, 778
TfiI GAWTC 3 cut(s) 260, 290, 770
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 1 cut(s) 376
TseI GCWGC 3 cut(s) 322, 401, 532
TspDTI ATGAA 6 cut(s) 252, 282, 401, 449, 737, 765
TspRI CASTG 1 cut(s) 376
Van91I CCANNNNNTGG 1 cut(s) 349
XapI RAATTY 3 cut(s) 35, 230, 456
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.