Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Reverse (-)

37446471 .. 37448025

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTTGTATGATTCTCTTGTGGAAGCACAGAGCTTGAAAGAGGCCAATCCTAAATTGCAGAGCTTGGAAGTAGACCCTAAATCAAAGGGCTTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACGGTTCTAAATCACTAGAAGACCCTAAATCACAGAGCGTGAAAGAAGAAGACCATAAATCACAGCGATTGAAAGAAGAGGAATGTAAGTCCCGCAGCTCGGAAGAAGACCTTAAGTTAAACAGCTTGGAAGAAGACCCTAAATCGCAGAGCTTGAAAGAAGAAGACCCTAAATTACAGAGCTTGGAAGAGGAAGAGCCTAAATCACAGAGCTTGAAAGAAGAAGGACGAGATAGCTTGGGAGACCCTAAATTCAATGAAAATGCATTGCAATTCCTGGATTCAATGGATGGGTATATAACCCTAAAGGATTCATTGTCTAGGACACTTTGGCAGGGATGGCTGCAACTAGTGAGTGCACGCCACTCAATGGGTGGGTCGCGGGTGAGCAGTGCGGTGTTGGATATGAAGCCCCACTCAGCTGCTACTTTTTGGCAAGTCAGCAAACAATCCAATCCAGGAGTAGGAGAGGACAAGGATGGAGATCCAGCCCCTGTTACAGCTGAAGATGACCATCATCAGCAACTTCAGAAGGAGCGGTTTAAATCACTTTCGGTGTTTGACGCCTTGGTTTCCCCCAAGCTACGGGCGGCTCAGCTCTCATTCGAAACTGCGCTGGAAGCACTTGTAGAGATTGCTAACATGCGATCGTTGATGCTTTCCAATTTTCATGAAGTCAGAAAAGAAATGGAATCAGCAAATTGCAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

31.51

Weight (kDa)

4.87

Isoelectric Point (pI)

69.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	511
AciI	CCGC	5 cut(s)	223, 511, 524, 667, 719
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	641, 654
AcyI	GRCGYC	1 cut(s)	693
AfiI	CCNNNNNNNGG	4 cut(s)	229, 499, 593, 714
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	7 cut(s)	37, 124, 202, 286, 346, 385, 414
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	405, 586
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	1 cut(s)	366
Alw44I	GTGCAC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	608
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	3 cut(s)	225, 472, 551
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	745
AsuHPI	GGTGA	1 cut(s)	526
AsuII	TTCGAA	1 cut(s)	735
BaeGI	GKGCMC	1 cut(s)	490
BbsI	GAAGAC	6 cut(s)	135, 156, 186, 243, 270, 300
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	237, 459, 538
BccI	CCATC	4 cut(s)	413, 462, 602, 651
BciT130I	CCWGG	2 cut(s)	407, 588
BcoDI	GTCTC	1 cut(s)	366
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	3 cut(s)	146, 450, 479
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	4 cut(s)	226, 473, 552, 720
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	4 cut(s)	227, 474, 553, 721
Bme1390I	CCNGG	2 cut(s)	407, 588
BmrFI	CCNGG	2 cut(s)	407, 588
BmsI	GCATC	1 cut(s)	774
BpiI	GAAGAC	6 cut(s)	135, 156, 186, 243, 270, 300
Bpu1102I	GCTNAGC	1 cut(s)	723
Bpu14I	TTCGAA	1 cut(s)	735
BsaBI	GATNNNNATC	2 cut(s)	612, 642
BsaHI	GRCGYC	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 499, 593, 714
Bse3DI	GCAATG	1 cut(s)	395
Bse8I	GATNNNNATC	2 cut(s)	612, 642
BseBI	CCWGG	2 cut(s)	407, 588
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	3 cut(s)	424, 473, 613
BseJI	GATNNNNATC	2 cut(s)	612, 642
BseLI	CCNNNNNNNGG	4 cut(s)	229, 499, 593, 714
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	561, 737
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	237, 459, 538
Bsh1236I	CGCG	1 cut(s)	511
Bsh1285I	CGRYCG	1 cut(s)	779
BshFI	GGCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	779
BsiHKAI	GWGCWC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	4 cut(s)	229, 499, 593, 714
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	735
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	613, 776
Bsp1720I	GCTNAGC	1 cut(s)	723
BspACI	CCGC	5 cut(s)	223, 511, 524, 667, 719
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	560, 736
BspFNI	CGCG	1 cut(s)	511
BspHI	TCATGA	1 cut(s)	799
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	318
BspT104I	TTCGAA	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	2 cut(s)	613, 776
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	407, 588
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	3 cut(s)	201, 312, 318
BstACI	GRCGYC	1 cut(s)	693
BstAFI	CTTAAG	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	735
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	547, 723
BstF5I	GGATG	3 cut(s)	424, 473, 613
BstFNI	CGCG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	2 cut(s)	616, 779
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	2 cut(s)	613, 776
BstMCI	CGRYCG	1 cut(s)	779
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 749
BstNI	CCWGG	2 cut(s)	407, 588
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	2 cut(s)	405, 586
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	511
BstV1I	GCAGC	3 cut(s)	237, 459, 538
BstV2I	GAAGAC	6 cut(s)	135, 156, 186, 243, 270, 300
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	424, 473, 613
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	490
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	1 cut(s)	745
CseI	GACGC	1 cut(s)	701
CviAII	CATG	2 cut(s)	772, 800
DdeI	CTNAG	2 cut(s)	547, 723
DpnI	GATC	2 cut(s)	615, 778
DpnII	GATC	2 cut(s)	613, 776
DraI	TTTAAA	1 cut(s)	673
Eam1104I	CTCTTC	3 cut(s)	201, 312, 318
EarI	CTCTTC	3 cut(s)	201, 312, 318
Eco130I	CCWWGG	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	366
Eco57I	CTGAAG	2 cut(s)	641, 654
EcoRII	CCWGG	2 cut(s)	405, 586
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	2 cut(s)	775, 803
FaiI	YATR	7 cut(s)	9, 186, 426, 428, 536, 773, 801
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	771, 799
FauI	CCCGC	2 cut(s)	230, 504
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	226, 473, 552, 720
FokI	GGATG	3 cut(s)	431, 480, 620
Fsp4HI	GCNGC	4 cut(s)	226, 473, 552, 720
FspBI	CTAG	3 cut(s)	146, 450, 479
GlaI	GCGC	1 cut(s)	744
GluI	GCNGC	4 cut(s)	226, 473, 552, 720
HaeIII	GGCC	1 cut(s)	44
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	1 cut(s)	745
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	2 cut(s)	775, 803
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HinfI	GANTC	4 cut(s)	11, 410, 440, 821
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	2 cut(s)	73, 488
Hpy188I	TCNGA	3 cut(s)	232, 660, 809
Hpy188III	TCNNGA	1 cut(s)	800
Hpy8I	GTNNAC	2 cut(s)	73, 488
HpyAV	CCTTC	2 cut(s)	347, 655
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	6 cut(s)	58, 395, 400, 475, 488, 834
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 749
HpyF3I	CTNAG	2 cut(s)	547, 723
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	2 cut(s)	775, 803
HspAI	GCGC	1 cut(s)	743
Kzo9I	GATC	2 cut(s)	613, 776
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	664
LpnPI	CCDG	8 cut(s)	392, 419, 449, 573, 600, 630, 636, 731
Lsp1109I	GCAGC	3 cut(s)	237, 459, 538
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	3 cut(s)	146, 450, 479
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	2 cut(s)	615, 778
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	2 cut(s)	613, 776
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	7 cut(s)	53, 110, 302, 380, 401, 793, 829
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	4 cut(s)	34, 202, 313, 592
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	3 cut(s)	243, 248, 672
MspA1I	CMGCKG	2 cut(s)	551, 632
MspCI	CTTAAG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	407, 588
MvaI	CCWGG	2 cut(s)	407, 588
MvnI	CGCG	1 cut(s)	511
MwoI	GCNNNNNNNGC	2 cut(s)	469, 749
NdeII	GATC	2 cut(s)	613, 776
NlaIII	CATG	2 cut(s)	775, 803
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	735
PagI	TCATGA	1 cut(s)	799
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	11, 410, 440, 821
PflMI	CCANNNNNTGG	1 cut(s)	499
PfoI	TCCNGGA	2 cut(s)	405, 586
PkrI	GCNGC	4 cut(s)	227, 474, 553, 721
Ple19I	CGATCG	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	405, 586
PspGI	CCWGG	2 cut(s)	405, 586
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	613
PvuI	CGATCG	1 cut(s)	779
PvuII	CAGCTG	2 cut(s)	551, 632
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	243, 248, 672
SatI	GCNGC	4 cut(s)	226, 473, 552, 720
Sau3AI	GATC	2 cut(s)	613, 776
ScrFI	CCNGG	2 cut(s)	407, 588
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	478
Sse9I	AATT	7 cut(s)	53, 110, 302, 380, 401, 793, 829
SsiI	CCGC	5 cut(s)	223, 511, 524, 667, 719
SspMI	CTAG	3 cut(s)	146, 450, 479
StyD4I	CCNGG	2 cut(s)	405, 586
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	735
TasI	AATT	7 cut(s)	53, 110, 302, 380, 401, 793, 829
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	4 cut(s)	11, 410, 440, 821
Tru1I	TTAA	3 cut(s)	243, 248, 672
Tru9I	TTAA	3 cut(s)	243, 248, 672
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	3 cut(s)	225, 472, 551
TspDTI	ATGAA	5 cut(s)	402, 432, 551, 788, 816
TspRI	CASTG	1 cut(s)	526
Van91I	CCANNNNNTGG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	242
VneI	GTGCAC	1 cut(s)	486
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	3 cut(s)	146, 450, 479
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.