Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Forward (+)

10901176 .. 10902025

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAAGAACCTAAATTGCAGAACTTGGAAGAAGACGACCCTAAATCACAAAGCTTGGAAGAACAAGCCAATAAAGCCCCAAGCTTGAAAGAAGGCTCTATGTCACAGAGCTTAGAAGAAGACCCTACACCACAGAGCTTGAAAGAACCTAAATTACAGAGCTTGGAAAAAGGAGACCCTAAATCACAGAGCTTGAAAGAAGACTCTAAATCGCAGAACGTGGAAGAAGGAGACTCTAAATCCCAGAGCTTGAAAGAAGGCCCTAAATCACTCAGCTTGGAAGAAAACCCTAAATCACTCAGCTTGGAAGAAGACCCTAAATCACTGAGCTTGGAAGGACGAGATAAAATTGCATTCTCTGAATTGAATGAAAATTCATTGCAGTTCCTGGATTCAATCGACGGGTATTTAACCCTATTGGATTCACTGTCCTGGACACTCCGGCAGGGGTGGTTGCAATTAGCAAGTGCTCGACATTCTATGGGTGAGTCACGCGTGAGCAGTGCTTTGTTGGACCTGAAATCCCACAATGCAAGTACATTTCTGCAAGTAACCCAGCAATCTGATACTGAAACAGAGCAAATTCATCATTTTACATTGCGCAAATGGGCATCCTCCGACAATGACAATGGAGCTCCACTTATGAATATGAGTCCACAGATACGACAACGAAAGGATAAGGATGGATCGATCCACCCCCACTTAAAGCTGAAACTGATCACCAACATCAACTTCAGAAGGAGCGGACTAAGTCACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.37

Weight (kDa)

5.19

Isoelectric Point (pI)

68.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	744
AccII	CGCG	1 cut(s)	495
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	2 cut(s)	685, 694
AcsI	RAATTY	2 cut(s)	373, 582
AcuI	CTGAAG	1 cut(s)	718
AfaI	GTAC	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	6 cut(s)	88, 142, 196, 253, 367, 396
AjnI	CCWGG	2 cut(s)	387, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
Alw21I	GWGCWC	2 cut(s)	472, 637
Alw26I	GTCTC	2 cut(s)	168, 225
AlwI	GGATC	2 cut(s)	685, 694
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	259
ApoI	RAATTY	2 cut(s)	373, 582
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	260, 514
AsuHPI	GGTGA	2 cut(s)	497, 712
AvaII	GGWCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	637
BbsI	GAAGAC	4 cut(s)	39, 126, 207, 318
Bbv12I	GWGCWC	2 cut(s)	472, 637
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	2 cut(s)	389, 433
BclI	TGATCA	1 cut(s)	717
BcoDI	GTCTC	2 cut(s)	168, 225
Bme1390I	CCNGG	2 cut(s)	389, 433
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	260, 514
BmrFI	CCNGG	2 cut(s)	389, 433
BmsI	GCATC	1 cut(s)	620
BpiI	GAAGAC	4 cut(s)	39, 126, 207, 318
Bsa29I	ATCGAT	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	168
Bse3DI	GCAATG	2 cut(s)	377, 596
BseBI	CCWGG	2 cut(s)	389, 433
BseCI	ATCGAT	1 cut(s)	689
BseGI	GGATG	2 cut(s)	611, 688
BseMI	GCAATG	2 cut(s)	377, 596
BseMII	CTCAG	3 cut(s)	286, 313, 317
BseYI	CCCAGC	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	689
BsiHKAI	GWGCWC	2 cut(s)	472, 637
BsiSI	CCGG	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	168, 225
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	472, 637
Bsp143I	GATC	3 cut(s)	686, 690, 717
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	3 cut(s)	285, 312, 318
BspDI	ATCGAT	1 cut(s)	689
BspFNI	CGCG	1 cut(s)	495
BspPI	GGATC	2 cut(s)	685, 694
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	744
BsrDI	GCAATG	2 cut(s)	377, 596
BssMI	GATC	3 cut(s)	686, 690, 717
Bst2UI	CCWGG	2 cut(s)	389, 433
Bst4CI	ACNGT	2 cut(s)	429, 758
BstDEI	CTNAG	5 cut(s)	112, 272, 299, 326, 749
BstF5I	GGATG	2 cut(s)	611, 688
BstFNI	CGCG	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	3 cut(s)	689, 693, 720
BstMAI	GTCTC	2 cut(s)	168, 225
BstMBI	GATC	3 cut(s)	686, 690, 717
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	389, 433
BstSCI	CCNGG	2 cut(s)	387, 431
BstUI	CGCG	1 cut(s)	495
BstV2I	GAAGAC	4 cut(s)	39, 126, 207, 318
Bsu15I	ATCGAT	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	689
BtsCI	GGATG	2 cut(s)	611, 688
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	4 cut(s)	323, 425, 508, 754
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	260, 514
ClaI	ATCGAT	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	537
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	5 cut(s)	112, 272, 299, 326, 749
DpnI	GATC	3 cut(s)	688, 692, 719
DpnII	GATC	3 cut(s)	686, 690, 717
Ecl136II	GAGCTC	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	637
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	718
EcoICRI	GAGCTC	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	387, 431
EcoT38I	GRGCYC	1 cut(s)	637
FaiI	YATR	4 cut(s)	101, 482, 644, 650
FbaI	TGATCA	1 cut(s)	717
FokI	GGATG	2 cut(s)	598, 695
FriOI	GRGCYC	1 cut(s)	637
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GsaI	CCCAGC	1 cut(s)	559
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	603
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	2 cut(s)	52, 82
HinfI	GANTC	6 cut(s)	203, 233, 392, 422, 488, 652
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	2 cut(s)	497, 712
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	4 cut(s)	361, 565, 619, 737
Hpy8I	GTNNAC	1 cut(s)	656
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	5 cut(s)	86, 221, 251, 329, 732
HpyCH4III	ACNGT	2 cut(s)	429, 758
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	6 cut(s)	19, 353, 382, 457, 533, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	5 cut(s)	112, 272, 299, 326, 749
HpySE526I	ACGT	1 cut(s)	219
HspAI	GCGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	686, 690, 717
LmnI	GCTCC	3 cut(s)	632, 640, 741
LpnPI	CCDG	9 cut(s)	257, 374, 401, 418, 431, 445, 455, 530, 569
LweI	GCATC	1 cut(s)	620
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	102, 489, 550, 752
MalI	GATC	3 cut(s)	688, 692, 719
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	3 cut(s)	686, 690, 717
MhlI	GDGCHC	2 cut(s)	472, 637
MluCI	AATT	7 cut(s)	14, 152, 348, 362, 373, 458, 582
MluI	ACGCGT	1 cut(s)	493
MlyI	GAGTC	4 cut(s)	197, 227, 497, 661
MmeI	TCCRAC	2 cut(s)	492, 642
MnlI	CCTC	1 cut(s)	625
MseI	TTAA	2 cut(s)	410, 704
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	2 cut(s)	389, 433
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	2 cut(s)	389, 433
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	3 cut(s)	686, 690, 717
NmuCI	GTSAC	3 cut(s)	102, 489, 752
NsbI	TGCGCA	1 cut(s)	602
PctI	GAATGC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	392, 422
PflFI	GACNNNGTC	1 cut(s)	750
PfoI	TCCNGGA	2 cut(s)	387, 431
PleI	GAGTC	4 cut(s)	197, 227, 496, 660
PpsI	GAGTC	4 cut(s)	197, 227, 496, 660
Psp124BI	GAGCTC	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	387, 431
PspFI	CCCAGC	1 cut(s)	555
PspGI	CCWGG	2 cut(s)	387, 431
PspPI	GGNCC	2 cut(s)	260, 514
PsrI	GAACNNNNNNTAC	2 cut(s)	138, 170
PstNI	CAGNNNCTG	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	750
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	637
SaqAI	TTAA	2 cut(s)	410, 704
Sau3AI	GATC	3 cut(s)	686, 690, 717
Sau96I	GGNCC	2 cut(s)	260, 514
SchI	GAGTC	4 cut(s)	197, 227, 497, 661
ScrFI	CCNGG	2 cut(s)	389, 433
SduI	GDGCHC	2 cut(s)	472, 637
SfaNI	GCATC	1 cut(s)	620
SinI	GGWCC	1 cut(s)	514
Sse9I	AATT	7 cut(s)	14, 152, 348, 362, 373, 458, 582
SsiI	CCGC	1 cut(s)	744
SstI	GAGCTC	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	387, 431
TaaI	ACNGT	2 cut(s)	429, 758
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	399, 472, 689
TasI	AATT	7 cut(s)	14, 152, 348, 362, 373, 458, 582
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	2 cut(s)	392, 422
Tru1I	TTAA	2 cut(s)	410, 704
Tru9I	TTAA	2 cut(s)	410, 704
TscAI	CASTG	4 cut(s)	330, 432, 508, 761
TseFI	GTSAC	3 cut(s)	102, 489, 752
Tsp45I	GTSAC	3 cut(s)	102, 489, 752
TspDTI	ATGAA	4 cut(s)	366, 384, 575, 659
TspRI	CASTG	4 cut(s)	330, 432, 508, 761
Tth111I	GACNNNGTC	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	2 cut(s)	373, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.