Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

22378850 .. 22385730

Gene Structure 6881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4431 bp

ATGATGGAGGATTTGTGGGTTCTGTATTGTGGGGAATCTGCTCCTTCCAATTTTGACTTTCTAGGCCATCCTTCTTCATGCACCAATCACTTGTTGATAATTTGCTTGGACATAGTTCTGTTAGCAATGCTTTTGTTCACTATGTTTCACAAGTCATCAACATCGAAATCAGCTCACATTCCAGCCCGGTATCGAGGCTTTTCGAGTTTGCAAATAGTGTCTGCAATTTTCAATGGCTGTCTTGGAGTTGTGTACTTTAGCTTGGGAACCTGGATTTTAGTACAGAAGCTTAAGGGTTCAGGATCCGCTTTGCCTTTGAATTGGTGGTTACTTGCTTTGTTTCAAGGGTCAACATGGCTATTGGTGAGTTTGAGTCTAAGCATCAGGGGTAAACAACTTCCAAGGCAACCTTCAAGACTGTTGTCTGTCCTTACATTCCTGTTTTCTGGAATTGTCTGCGCTCTATCGCTCTTCGCGGTCATTTTTGGGGAAGAAATATCTGTGAAGATAGTTCTAGATATGCTATCTTTTCCAGGAGCAGCATTGTTGCTGTTATGTGTTTATAAGGGTTATACACATGAAGAGGGCGATGATGAGAGCCTCAATGGAAATGGCCTTTTTACTCCTCTTTTTAATGGCGAGTCCAATGTCACTAGTAAAGGTGAAGATCATGTTACCCCATTTGCCAAAGCTGGATTCTTCAGTAAAATGTCACTTTGGTGGCTGAATTCATTGATGAAGAAGGGTAGGGAGAAAACTCTTGAGGATGAAGACATACCAAAGCTGCGTGAGGAAGATCAAGCAGAAAGCTGTTATCTGCTATACTTGGAGCAACTGAGCAAGCAGAAAAAAATTGATCCGTCTTCCCAACCATCAGTGTTAAAGACGATAATCATATGCCACTGGAAGGAGATCTTACTATCTGGCTTCTTTGCTTTACTTAAGATAGTCACTCTCTCTGCTGGTCCTTTGCTTCTCAATGCCTTTATTTTGGTTGCTGAGGGAAAGGAAAGTTTCAAATATGAAGGTTATGTGTTAGCCATAACACTTTTCCTTTCAAAAACCATGGAATCTTTATCACAAAGGCAATGGTACTTCAGATGCAGGCTTATTGGTTTGAAAATTAGGTCTTTGCTCACAGCAGCCATTTACAAGAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCAGGTGGTGAGATTATGAATTATGTTACAGTGGATGCTTATAGGGTTGGAGAGTTTCCATTTTGGTTCCATCAGACTTGGACAACTAGCCTCCAGCTTTGTTTTGCTTTGGTAATTCTTTTCCGTGCAGTCGGCCTAGCCACATTCGCATCATTGGTGGTCATAGTTTTGACTGTTGTTTGCAATGCTCCACTTGCTAAGTTACAACATAAGTTTCAAAGTAAGCTTATGGTGGCACAAGATGAAAGACTCAAGGCATGTTCTGAAGCTCTTATAAACATGAAGGTACTAAAACTGTATGCATGGGAAACCCATTTCAAGAAGGCAATAGAGAAAATGAGGAAGGAGGAGCATAAATGGTTATCTGCTGTACAGCTGAGGAAAGCATATAACACCTATCTCTTTTGGTCATCTCCTGTTTTGGTTTCTGCTGCAACATTTGGGGCATGCTATTTTCTCGGAATTCCATTGCATGCAAACAATGTCTTCACTTTCGTTGCAACTTTGGGCCTTGTTCAGAACCCTATTCAATCTATACCTGAGGTTATTGGGGTTGTCATTCAAGCCAAGGTTGCTTTTGAGCGTATTGTGAAATTCCTTGAGGCACCAGAGCTGCACACTTCAAATGTCAGGAAGTGCAACATGAAGAATGTAGCACATTCCATTGTTATCAAGTCAGCTAGTTTCTCATGGGAAGAGAACTTATCAAAGGCCACACTGAGAAATATAAATCTAGCGGTTACCCCTGGTCAGAAGGTGGCTATATGCGGAGAAGTTGGCTCAGGAAAATCAAGCCTCCTAGCTGCAATTCTCGGGGAAATTCCAAATGTTCAAGGAAATATTCAAGTTTTTGGGAAGATTGCCTATGTTTCTCAAACGGCATGGATCCAGACAGGGACAATACAGGAGAATATTCTATTTAGTTCTGCTATGGATAGTGAACGATACCGAGAAACGCTTGAGAGATGTTCACTTGTCAAGGACCTTGAGTTACTTCCCTATGGTGATCTTACTGAAATAGGGGAGAGAGGGGTCAATCTCAGTGGTGGTCAGAAGCAGCGGATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGACATATATCTCTTGGATGATCCATTTAGTGCTGTTGACGCACATACTGCTACTAACCTGTTTAATGAATATGTTATGGAAGCACTTTCAGGGAAGACAGTCTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCGGTGTTGTTGATGTTAGATGGTGAAATCCTTCAAGCAGCTCCTTATTATCAGTTATTGGAATCGAGCCAGGAATTTCAGGACCTTGTCAATGCACACAAGGAAACTGCTGGTTCTGAAAGGCTTTCAGATGTTCCTTCTGCCCAAAATTCTGTAACACCGTCCAGAGAGATTAGGAAGGCTTATGTAGAGAAGCAAATATTGAAAGGAAATAAAGGTGACCAGTTGATTAAGATAGAAGAGAGAGAAACAGGCGACACTGGTTTAAGGCCTTACAAACAGTATCTGAAACAAAACAAAGGGGTATTCTACTTCTCAGCCGCTGTTCTTTTTCACCTGACGTTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCTAATGTTAGCTCATTGCAATTGATAGTGGTTTACCTGTCAATTGGATTTTCAGCAACATTTCTTTTGCTGTTTAGATCTCTGCTAACAGTTGTTTTGGGACTTGAGGCATCAAAGTCATTGTTTTCTCAGCTACTAAACTCTCTATTTCGTGCACCAATGTCTTTCTATGACTCAACACCTCTGGGAAGGATACTTAGTCGGGTTTCAGCTGATCTAAGTATCGTAGATCTTGATATCCCATTCAGCCTTCTCTTTGCTTGTGGAGCTACTATAAATGCTTACTCCAATCTTGGAGTACTAGCTGTTGTTACATGGCAAGTCCTGTTTGTTTTGATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTATTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACTAAGTCCTTTGTAGCAAACCATCTAGCGGAGTCTGTTTCAGGAGCCATTACAATAAGAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGTCCCTTTTTTCATAGTTTTGCAGCAAATGAGTGGTTAATTCAACGGTTAGAAATAATCTGCGCAGCAGTTCTCGCATCTGCAGCACTGTGTATGGTTTTGCTTCCAACCGGAACTTTTAGCTCTGGGTTTATTGGAATGGCGCTTTCTTATGGTCTTTCACTAAACATGTCATTGATCTATTCGATTCAATTCCAGTGCACTGTAGCAAATTACATAATATCTGTTGAAAGACTAAATCAGTACACACATATACCAAGTGAAGCCCCTGAAGTTATAGAGGGAAACCGTCCACCTCCCAACTGGCCTGTTGTAGGTAAAGTGGAGATACAAAATTTGCAGATAAGATATAGGCCCGACACACCACTTGTTCTTCGAGGAATCAGTTGCATTTTTGAAGGAGGACACAAGATTGGTATTGTTGGTCGTACAGGCAGTGGGAAGTCTACTCTCATCGGTGCTTTATTTCGTCTGGTGGAGCCAGCTGGAGGGAAGATCACAGTCGATGGCATTGACATCTCTACTATAGGACTCCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTTTATGGGACTGTTAGATACAATTTGGATCCCCTATATCAACATTCAGACCCTGAGATATGGGAGGTTCTTGGGAAGTGTCAGCTACGAGAGGCTGTTCAAGAAAAAGAAGGCGGCTTAGACTCTTTAGTTGTGGAAGATGGATCAAACTGGAGCATGGGGCAAAGGCAGCTGTTCTGTTTGGGCCGAGCTCTATTGAGAAGAAGTCGCGTATTGGTGCTTGATGAAGCAACTGCTTCCATTGACAATGCAACTGATATGATCTTACAGAAGACTATACGCACTGAATTTGCAGATTGTACAGTTATTACAGTAGCTCACAGGATACCGACTGTGATGGATTGCACAATGGTCCTTGCCATTAGTGACGGGAAAATAGTGGAGTATGATGAGCCAATGAACCTAATGAAAAGGGAAGGCTCACTATTCGGGCAGCTTGTCAAGGAATACTGGTCTCATCTCCAGTCTGCAGAAGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1477

Amino Acids

164.27

Weight (kDa)

7.31

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 192	2.5e-75	ABCC10 N-terminal domain
ABC_membrane	PF00664	305 - 573	6.7e-24	ABC transporter transmembrane region
ABC_tran	PF00005	638 - 772	4.6e-22	ABC transporter
ABC_membrane	PF00664	917 - 1177	4.4e-26	ABC transporter transmembrane region
ABC_tran	PF00005	1247 - 1395	2.2e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	564, 1469
Acc16I	TGCGCA	1 cut(s)	3430
AccB1I	GGYRCC	1 cut(s)	1798
AccI	GTMKAC	1 cut(s)	3812
AccII	CGCG	2 cut(s)	476, 4158
AciI	CCGC	9 cut(s)	306, 476, 1931, 1962, 2254, 2754, 3275, 3325, 4062
AcsI	RAATTY	9 cut(s)	727, 1656, 1787, 2013, 2507, 2581, 3340, 3700, 4235
AcuI	CTGAAG	4 cut(s)	685, 1081, 1479, 3657
AfaI	GTAC	9 cut(s)	254, 282, 1094, 1482, 1566, 3129, 3611, 3796, 4249
AfiI	CCNNNNNNNGG	5 cut(s)	907, 3274, 3331, 3680, 3854
AflII	CTTAAG	2 cut(s)	290, 941
AflIII	ACRYGT	1 cut(s)	3534
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	4 cut(s)	269, 532, 1939, 2502
AjuI	GAANNNNNNNTTGG	4 cut(s)	394, 426, 680, 712
AleI	CACNNNNGTG	2 cut(s)	718, 1197
Alw21I	GWGCWC	4 cut(s)	2275, 2986, 3569, 4141
Alw26I	GTCTC	1 cut(s)	4407
Alw44I	GTGCAC	2 cut(s)	2982, 3565
AlwNI	CAGNNNCTG	3 cut(s)	2719, 2756, 4001
Ama87I	CYCGRG	1 cut(s)	2006
AoxI	GGCC	9 cut(s)	64, 613, 1327, 1702, 1905, 2702, 3671, 3719, 4132
ApaLI	GTGCAC	2 cut(s)	2982, 3565
ApoI	RAATTY	9 cut(s)	727, 1656, 1787, 2013, 2507, 2581, 3340, 3700, 4235
Asp700I	GAANNNNTTC	1 cut(s)	2463
AspLEI	GCGC	3 cut(s)	461, 3431, 3511
AspS9I	GGNCC	7 cut(s)	965, 1702, 2176, 2515, 3720, 4132, 4300
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	8 cut(s)	376, 674, 1214, 2210, 2468, 2663, 2759, 3338
AvaI	CYCGRG	1 cut(s)	2006
AvaII	GGWCC	4 cut(s)	965, 2176, 2515, 4300
AxyI	CCTNAGG	1 cut(s)	1734
BaeGI	GKGCMC	2 cut(s)	2986, 3569
BamHI	GGATCC	3 cut(s)	302, 2079, 3976
BanI	GGYRCC	1 cut(s)	1798
BanII	GRGCYC	1 cut(s)	4141
BauI	CACGAG	1 cut(s)	2268
BbsI	GAAGAC	6 cut(s)	777, 855, 1672, 2390, 3327, 4226
Bbv12I	GWGCWC	4 cut(s)	2275, 2986, 3569, 4141
BbvCI	CCTCAGC	2 cut(s)	999, 1571
BceAI	ACGGC	1 cut(s)	2088
BcgI	CGANNNNNNTGC	2 cut(s)	2415, 2449
BciT130I	CCWGG	4 cut(s)	271, 534, 1941, 2504
BciVI	GTATCC	2 cut(s)	3015, 4266
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	4407
BcuI	ACTAGT	1 cut(s)	653
BfmI	CTRYAG	5 cut(s)	3194, 3447, 3570, 3891, 4416
BfoI	RGCGCY	1 cut(s)	3512
BfrI	CTTAAG	2 cut(s)	290, 941
BfuI	GTATCC	2 cut(s)	3015, 4266
BglII	AGATCT	3 cut(s)	912, 2906, 3058
BmcAI	AGTACT	1 cut(s)	3129
Bme1390I	CCNGG	5 cut(s)	187, 271, 534, 1941, 2504
Bme18I	GGWCC	4 cut(s)	965, 2176, 2515, 4300
BmeT110I	CYCGRG	1 cut(s)	2006
BmgT120I	GGNCC	7 cut(s)	965, 1702, 2176, 2515, 3720, 4132, 4300
BmiI	GGNNCC	8 cut(s)	268, 304, 1262, 1800, 2081, 3292, 3846, 3978
BmrFI	CCNGG	5 cut(s)	187, 271, 534, 1941, 2504
BmsI	GCATC	6 cut(s)	390, 1091, 1219, 1352, 2948, 3452
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	6 cut(s)	777, 855, 1672, 2390, 3327, 4226
BpmI	CTGGAG	4 cut(s)	1271, 3873, 4120, 4394
Bpu10I	CCTNAGC	3 cut(s)	999, 1571, 1975
BpuEI	CTTGAG	7 cut(s)	782, 1430, 1814, 2174, 2201, 2954, 3918
BpuMI	CCSGG	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	3233
BsaI	GGTCTC	1 cut(s)	4407
BsaJI	CCNNGG	4 cut(s)	401, 1065, 1761, 1939
BsaWI	WCCGGW	1 cut(s)	3476
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	5 cut(s)	907, 3274, 3331, 3680, 3854
Bse1I	ACTGG	8 cut(s)	908, 2656, 2698, 3562, 3674, 4103, 4403, 4411
Bse21I	CCTNAGG	1 cut(s)	1734
Bse3DI	GCAATG	5 cut(s)	132, 1094, 1384, 1661, 2843
Bse8I	GATNNNNATC	1 cut(s)	3233
BseBI	CCWGG	4 cut(s)	271, 534, 1941, 2504
BseDI	CCNNGG	4 cut(s)	401, 1065, 1761, 1939
BseGI	GGATG	5 cut(s)	67, 772, 1234, 2311, 2814
BseJI	GATNNNNATC	1 cut(s)	3233
BseLI	CCNNNNNNNGG	5 cut(s)	907, 3274, 3331, 3680, 3854
BseMI	GCAATG	5 cut(s)	132, 1094, 1384, 1661, 2843
BseNI	ACTGG	8 cut(s)	908, 2656, 2698, 3562, 3674, 4103, 4403, 4411
BseRI	GAGGAG	2 cut(s)	615, 1556
BseSI	GKGCMC	2 cut(s)	2986, 3569
BsgI	GTGCAG	2 cut(s)	1341, 1793
Bsh1236I	CGCG	2 cut(s)	476, 4158
BshFI	GGCC	9 cut(s)	66, 615, 1329, 1704, 1907, 2704, 3673, 3721, 4134
BshNI	GGYRCC	1 cut(s)	1798
BsiHKAI	GWGCWC	4 cut(s)	2275, 2986, 3569, 4141
BsiHKCI	CYCGRG	1 cut(s)	2006
BsiSI	CCGG	2 cut(s)	187, 3477
BslFI	GGGAC	4 cut(s)	2104, 2943, 3354, 3970
BslI	CCNNNNNNNGG	5 cut(s)	907, 3274, 3331, 3680, 3854
BsmAI	GTCTC	1 cut(s)	4407
BsmFI	GGGAC	4 cut(s)	2104, 2943, 3354, 3970
BsmI	GAATGC	1 cut(s)	2290
BsnI	GGCC	9 cut(s)	66, 615, 1329, 1704, 1907, 2704, 3673, 3721, 4134
Bso31I	GGTCTC	1 cut(s)	4407
BsoBI	CYCGRG	1 cut(s)	2006
Bsp1286I	GDGCHC	4 cut(s)	2275, 2986, 3569, 4141
Bsp1407I	TGTACA	2 cut(s)	1564, 4247
Bsp19I	CCATGG	1 cut(s)	1065
BspACI	CCGC	9 cut(s)	306, 476, 1931, 1962, 2254, 2754, 3275, 3325, 4062
BspANI	GGCC	9 cut(s)	66, 615, 1329, 1704, 1907, 2704, 3673, 3721, 4134
BspFNI	CGCG	2 cut(s)	476, 4158
BspLI	GGNNCC	8 cut(s)	268, 304, 1262, 1800, 2081, 3292, 3846, 3978
BspMAI	CTGCAG	2 cut(s)	3451, 4420
BspQI	GCTCTTC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	1798
BspTI	CTTAAG	2 cut(s)	290, 941
BspTNI	GGTCTC	1 cut(s)	4407
BsrDI	GCAATG	5 cut(s)	132, 1094, 1384, 1661, 2843
BsrGI	TGTACA	2 cut(s)	1564, 4247
BsrI	ACTGG	8 cut(s)	908, 2656, 2698, 3562, 3674, 4103, 4403, 4411
BssECI	CCNNGG	4 cut(s)	401, 1065, 1761, 1939
BssSI	CACGAG	1 cut(s)	2268
BssT1I	CCWWGG	3 cut(s)	401, 1065, 1761
Bst2BI	CACGAG	1 cut(s)	2268
Bst2UI	CCWGG	4 cut(s)	271, 534, 1941, 2504
Bst6I	CTCTTC	4 cut(s)	476, 576, 1884, 2667
BstAFI	CTTAAG	2 cut(s)	290, 941
BstAPI	GCANNNNNTGC	1 cut(s)	2336
BstAUI	TGTACA	2 cut(s)	1564, 4247
BstC8I	GCNNGC	6 cut(s)	842, 1106, 1642, 1668, 2424, 3849
BstDSI	CCRYGG	1 cut(s)	1065
BstEII	GGTNACC	2 cut(s)	1933, 2651
BstENI	CCTNNNNNAGG	1 cut(s)	3678
BstF5I	GGATG	5 cut(s)	67, 772, 1234, 2311, 2814
BstFNI	CGCG	2 cut(s)	476, 4158
BstH2I	RGCGCY	1 cut(s)	3512
BstHHI	GCGC	3 cut(s)	461, 3431, 3511
BstMAI	GTCTC	1 cut(s)	4407
BstMWI	GCNNNNNNNGC	9 cut(s)	1340, 1388, 1766, 2327, 2336, 3095, 3440, 3449, 4117
BstNI	CCWGG	4 cut(s)	271, 534, 1941, 2504
BstNSI	RCATGY	4 cut(s)	1455, 1644, 1670, 3538
BstPAI	GACNNNNGTC	1 cut(s)	421
BstPI	GGTNACC	2 cut(s)	1933, 2651
BstSCI	CCNGG	5 cut(s)	185, 269, 532, 1939, 2502
BstSFI	CTRYAG	5 cut(s)	3194, 3447, 3570, 3891, 4416
BstSLI	GKGCMC	2 cut(s)	2986, 3569
BstUI	CGCG	2 cut(s)	476, 4158
BstV2I	GAAGAC	6 cut(s)	777, 855, 1672, 2390, 3327, 4226
BstX2I	RGATCY	6 cut(s)	302, 912, 2079, 2906, 3058, 3976
BstYI	RGATCY	6 cut(s)	302, 912, 2079, 2906, 3058, 3976
Bsu36I	CCTNAGG	1 cut(s)	1734
BsuI	GTATCC	2 cut(s)	3015, 4266
BsuRI	GGCC	9 cut(s)	66, 615, 1329, 1704, 1907, 2704, 3673, 3721, 4134
BtgI	CCRYGG	1 cut(s)	1065
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	5 cut(s)	67, 772, 1234, 2311, 2814
BtsI	GCAGTG	2 cut(s)	3213, 3808
Cac8I	GCNNGC	6 cut(s)	842, 1106, 1642, 1668, 2424, 3849
CaiI	CAGNNNCTG	3 cut(s)	2719, 2756, 4001
CfoI	GCGC	3 cut(s)	461, 3431, 3511
Cfr13I	GGNCC	7 cut(s)	965, 1702, 2176, 2515, 3720, 4132, 4300
CseI	GACGC	1 cut(s)	2336
Csp6I	GTAC	9 cut(s)	253, 281, 1093, 1481, 1565, 3128, 3610, 3795, 4248
CspCI	CAANNNNNGTGG	2 cut(s)	2218, 2253
CviQI	GTAC	9 cut(s)	253, 281, 1093, 1481, 1565, 3128, 3610, 3795, 4248
Eam1104I	CTCTTC	4 cut(s)	476, 576, 1884, 2667
EarI	CTCTTC	4 cut(s)	476, 576, 1884, 2667
Ecl136II	GAGCTC	1 cut(s)	4139
Eco130I	CCWWGG	3 cut(s)	401, 1065, 1761
Eco147I	AGGCCT	1 cut(s)	2704
Eco24I	GRGCYC	1 cut(s)	4141
Eco31I	GGTCTC	1 cut(s)	4407
Eco32I	GATATC	1 cut(s)	3067
Eco47I	GGWCC	4 cut(s)	965, 2176, 2515, 4300
Eco53kI	GAGCTC	1 cut(s)	4139
Eco57I	CTGAAG	4 cut(s)	685, 1081, 1479, 3657
Eco81I	CCTNAGG	1 cut(s)	1734
Eco88I	CYCGRG	1 cut(s)	2006
Eco91I	GGTNACC	2 cut(s)	1933, 2651
EcoICRI	GAGCTC	1 cut(s)	4139
EcoNI	CCTNNNNNAGG	1 cut(s)	3678
EcoO109I	RGGNCCY	2 cut(s)	2176, 2515
EcoO65I	GGTNACC	2 cut(s)	1933, 2651
EcoRI	GAATTC	2 cut(s)	727, 1656
EcoRII	CCWGG	4 cut(s)	269, 532, 1939, 2502
EcoRV	GATATC	1 cut(s)	3067
EcoT14I	CCWWGG	3 cut(s)	401, 1065, 1761
EcoT22I	ATGCAT	1 cut(s)	1498
EcoT38I	GRGCYC	1 cut(s)	4141
ErhI	CCWWGG	3 cut(s)	401, 1065, 1761
FalI	AAGNNNNNCTT	6 cut(s)	394, 426, 899, 931, 2375, 2407
FaqI	GGGAC	4 cut(s)	2104, 2943, 3354, 3970
FauNDI	CATATG	1 cut(s)	896
FblI	GTMKAC	1 cut(s)	3812
FokI	GGATG	5 cut(s)	54, 779, 1241, 2318, 2821
FriOI	GRGCYC	1 cut(s)	4141
FspI	TGCGCA	1 cut(s)	3430
GlaI	GCGC	3 cut(s)	460, 3430, 3510
GsuI	CTGGAG	4 cut(s)	1271, 3873, 4120, 4394
HaeII	RGCGCY	1 cut(s)	3512
HaeIII	GGCC	9 cut(s)	66, 615, 1329, 1704, 1907, 2704, 3673, 3721, 4134
HapII	CCGG	2 cut(s)	187, 3477
HgaI	GACGC	1 cut(s)	2336
HhaI	GCGC	3 cut(s)	461, 3431, 3511
Hin6I	GCGC	3 cut(s)	459, 3429, 3509
HinP1I	GCGC	3 cut(s)	459, 3429, 3509
HincII	GTYRAC	3 cut(s)	351, 1188, 2326
HindII	GTYRAC	3 cut(s)	351, 1188, 2326
HindIII	AAGCTT	2 cut(s)	287, 1418
HpaII	CCGG	2 cut(s)	187, 3477
HphI	GGTGA	8 cut(s)	376, 674, 1214, 2210, 2468, 2663, 2759, 3338
HpyCH4IV	ACGT	1 cut(s)	2774
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1340, 1388, 1766, 2327, 2336, 3095, 3440, 3449, 4117
HpySE526I	ACGT	1 cut(s)	2774
HspAI	GCGC	3 cut(s)	459, 3429, 3509
LguI	GCTCTTC	1 cut(s)	476
LweI	GCATC	6 cut(s)	390, 1091, 1219, 1352, 2948, 3452
MaeII	ACGT	1 cut(s)	2774
MfeI	CAATTG	3 cut(s)	1160, 2849, 2871
MflI	RGATCY	6 cut(s)	302, 912, 2079, 2906, 3058, 3976
MhlI	GDGCHC	4 cut(s)	2275, 2986, 3569, 4141
MlyI	GAGTC	7 cut(s)	382, 650, 1437, 2996, 3287, 3891, 4064
MmeI	TCCRAC	2 cut(s)	1222, 3497
Mph1103I	ATGCAT	1 cut(s)	1498
MroXI	GAANNNNTTC	1 cut(s)	2463
MseI	TTAA	8 cut(s)	291, 633, 881, 942, 2352, 2664, 2699, 3404
MslI	CAYNNNNRTG	2 cut(s)	718, 1197
MspA1I	CMGCKG	6 cut(s)	1570, 2254, 2756, 3041, 3851, 4120
MspCI	CTTAAG	2 cut(s)	290, 941
MspI	CCGG	2 cut(s)	187, 3477
MspR9I	CCNGG	5 cut(s)	187, 271, 534, 1941, 2504
MunI	CAATTG	3 cut(s)	1160, 2849, 2871
Mva1269I	GAATGC	1 cut(s)	2290
MvaI	CCWGG	4 cut(s)	271, 534, 1941, 2504
MvnI	CGCG	2 cut(s)	476, 4158
MwoI	GCNNNNNNNGC	9 cut(s)	1340, 1388, 1766, 2327, 2336, 3095, 3440, 3449, 4117
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	1065
NdeI	CATATG	1 cut(s)	896
NlaIV	GGNNCC	8 cut(s)	268, 304, 1262, 1800, 2081, 3292, 3846, 3978
NmeAIII	GCCGAG	1 cut(s)	4160
NmuCI	GTSAC	6 cut(s)	649, 711, 949, 2398, 2651, 4313
NsbI	TGCGCA	1 cut(s)	3430
NsiI	ATGCAT	1 cut(s)	1498
NspI	RCATGY	4 cut(s)	1455, 1644, 1670, 3538
OliI	CACNNNNGTG	2 cut(s)	718, 1197
PaeI	GCATGC	2 cut(s)	1644, 1670
PceI	AGGCCT	1 cut(s)	2704
PciI	ACATGT	1 cut(s)	3534
PciSI	GCTCTTC	1 cut(s)	476
PctI	GAATGC	1 cut(s)	2290
PdmI	GAANNNNTTC	1 cut(s)	2463
PfeI	GAWTC	8 cut(s)	35, 696, 1070, 2257, 2432, 2495, 3553, 3747
PflFI	GACNNNGTC	1 cut(s)	2519
PfoI	TCCNGGA	1 cut(s)	532
PleI	GAGTC	7 cut(s)	381, 649, 1437, 2996, 3286, 3891, 4064
PpsI	GAGTC	7 cut(s)	381, 649, 1437, 2996, 3286, 3891, 4064
PpuMI	RGGWCCY	2 cut(s)	2176, 2515
PscI	ACATGT	1 cut(s)	3534
PshAI	GACNNNNGTC	1 cut(s)	421
PsiI	TTATAA	2 cut(s)	564, 1469
Psp124BI	GAGCTC	1 cut(s)	4141
Psp5II	RGGWCCY	2 cut(s)	2176, 2515
Psp6I	CCWGG	4 cut(s)	269, 532, 1939, 2502
PspEI	GGTNACC	2 cut(s)	1933, 2651
PspGI	CCWGG	4 cut(s)	269, 532, 1939, 2502
PspN4I	GGNNCC	8 cut(s)	268, 304, 1262, 1800, 2081, 3292, 3846, 3978
PspPI	GGNCC	7 cut(s)	965, 1702, 2176, 2515, 3720, 4132, 4300
PspPPI	RGGWCCY	2 cut(s)	2176, 2515
PstI	CTGCAG	2 cut(s)	3451, 4420
PstNI	CAGNNNCTG	3 cut(s)	2719, 2756, 4001
PsuI	RGATCY	6 cut(s)	302, 912, 2079, 2906, 3058, 3976
PsyI	GACNNNGTC	1 cut(s)	2519
PvuII	CAGCTG	4 cut(s)	1570, 3041, 3851, 4120
RsaI	GTAC	9 cut(s)	254, 282, 1094, 1482, 1566, 3129, 3611, 3796, 4249
RsaNI	GTAC	9 cut(s)	253, 281, 1093, 1481, 1565, 3128, 3610, 3795, 4248
RseI	CAYNNNNRTG	2 cut(s)	718, 1197
SacI	GAGCTC	1 cut(s)	4141
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	8 cut(s)	291, 633, 881, 942, 2352, 2664, 2699, 3404
Sau96I	GGNCC	7 cut(s)	965, 1702, 2176, 2515, 3720, 4132, 4300
ScaI	AGTACT	1 cut(s)	3129
SchI	GAGTC	7 cut(s)	382, 650, 1437, 2996, 3287, 3891, 4064
ScrFI	CCNGG	5 cut(s)	187, 271, 534, 1941, 2504
SduI	GDGCHC	4 cut(s)	2275, 2986, 3569, 4141
SfaNI	GCATC	6 cut(s)	390, 1091, 1219, 1352, 2948, 3452
SfcI	CTRYAG	5 cut(s)	3194, 3447, 3570, 3891, 4416
SinI	GGWCC	4 cut(s)	965, 2176, 2515, 4300
SmiMI	CAYNNNNRTG	2 cut(s)	718, 1197
SmlI	CTYRAG	9 cut(s)	290, 761, 941, 1445, 1793, 2153, 2180, 2933, 3933
SmoI	CTYRAG	9 cut(s)	290, 761, 941, 1445, 1793, 2153, 2180, 2933, 3933
SpeI	ACTAGT	1 cut(s)	653
SphI	GCATGC	2 cut(s)	1644, 1670
SseBI	AGGCCT	1 cut(s)	2704
SsiI	CCGC	9 cut(s)	306, 476, 1931, 1962, 2254, 2754, 3275, 3325, 4062
SspI	AATATT	4 cut(s)	2035, 2107, 2634, 3203
SstI	GAGCTC	1 cut(s)	4141
StuI	AGGCCT	1 cut(s)	2704
StyD4I	CCNGG	5 cut(s)	185, 269, 532, 1939, 2502
StyI	CCWWGG	3 cut(s)	401, 1065, 1761
TaiI	ACGT	1 cut(s)	2777
TaqI	TCGA	7 cut(s)	164, 193, 203, 2498, 3551, 3742, 3870
TatI	WGTACW	6 cut(s)	252, 280, 1564, 3127, 3609, 4247
TauI	GCSGC	2 cut(s)	2756, 4065
TfiI	GAWTC	8 cut(s)	35, 696, 1070, 2257, 2432, 2495, 3553, 3747
Tru1I	TTAA	8 cut(s)	291, 633, 881, 942, 2352, 2664, 2699, 3404
Tru9I	TTAA	8 cut(s)	291, 633, 881, 942, 2352, 2664, 2699, 3404
TseFI	GTSAC	6 cut(s)	649, 711, 949, 2398, 2651, 4313
Tsp45I	GTSAC	6 cut(s)	649, 711, 949, 2398, 2651, 4313
TspGWI	ACGGA	2 cut(s)	849, 1307
Tth111I	GACNNNGTC	1 cut(s)	2519
Vha464I	CTTAAG	2 cut(s)	290, 941
VneI	GTGCAC	2 cut(s)	2982, 3565
VpaK11BI	GGWCC	4 cut(s)	965, 2176, 2515, 4300
XagI	CCTNNNNNAGG	1 cut(s)	3678
XapI	RAATTY	9 cut(s)	727, 1656, 1787, 2013, 2507, 2581, 3340, 3700, 4235
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	4 cut(s)	1455, 1644, 1670, 3538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3666
XmiI	GTMKAC	1 cut(s)	3812
XmnI	GAANNNNTTC	1 cut(s)	2463
ZrmI	AGTACT	1 cut(s)	3129
Zsp2I	ATGCAT	1 cut(s)	1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.