Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Forward (+)

2374649 .. 2381058

Gene Structure 6410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4002 bp

ATGACGCCATCTGACTCCGACTACGATCTTCACCGCTTTCAACCTCGTCCTCTGTTCCAGTCGGCTCAAATACTCTCACCTACTCTCTCTATAGTTCTAGATATCCTATCTTTTCCAGGAGCAGCATTGTTGCTGTTATGTGTTTATAAGGGTTATATACATGAAGAGGGTGATGAGAGCCTCAATGGAAATGGCCTTTATACTCCTCTTTATGGTGAGTCCAATGTCACTAGTAAAGGTGAAGATCATGTTACTCCATTTGCCAAAGCTGGATTTTTTAGTAAAATGTCACTTTGGTGGCTGAATTCATTGATGAAAAAGGGTAGAGAGAAAACTCTTGAGGACGAAGACATACCAAAGTTGCGTGAGGAAGATCAAGCAGAAAGCTGTTATCTGCTGTTCTTGGAGCAACTGAGCAAGCAGAAAGAAATTGATCCGTCTTCCCAACCATCAGTGTTGAAGACGATAATCATATGCCACTGGAAGGAGATTTTACTATCTGGCTTCTTTGCATTACTTAAGATAGTCACTCTCTCTGCTGGTCCTTTGCTTCTCAATGCCTTTATTTTGGTTGCTGAGGGAAATGAAAGTTTTAAATATGAAGGTTACGTGTTGGCCATAACACTTTTCCTTTCAAAGACCATTGAATCTTTGTCACAAAGGCAGTGGTACTTAAGATGCAGGCTTATTGGTTTGAAAATTAGGTCTTTGCTATCAGCAGCCATTTACAAGAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCTGGTGGTGAAATCATGAATTATGTTACTGTGGATGCTTATAGGATTGGAGAATTCCCATTTTGGTTCCATCAGACTTGGACAACTAGCCTCCAGCTTTGTTTTGCTTTGGTAATTCTTTTCCGTGCAGTCGGCCTAGCCACATTTGCATCATTGGTGGTGATAGTTTTGACTGTTGTTTGTAATGCTCCACTTGCTAAGTTACAACATAGGTTTCAAAGTAAGCTTATGGTGGCACAAGATGAAAGACTCAAGGCATGTTCAGAAGCTCTTATAAACATGAAGGTACTAAAACTGTATGCATGGGAAACCCATTTCAAGAATGCAATAGAGAAATTGAGGAAGGAGGAGCATAAATGGTTATCTGCTGTACAGCTAAGGAAAGCATATAACTCCTATCTCTTTTGGTCATCTCCGGTTTTGGTCTCTGCTGCAACATTTGGGGCATGCTATTTTCTCGGAATTCCATTGCATGCAAACAATGTTTTTACTTTTGTCGCAACTTTGCGCCTTGTTCAGGACCCCATTCGATCTATACCTGAGGTTATTGGGGTTGTCATTCAAGCCAAGGTTGCATTTGAGCGTATTGTGAAATTCCTTGAGGCACCAGAGCTGCACTCTTCAAATGTCAGGAAATGCAACATGAAGAATGTAGCACATTCCATTGTTATTAAGTCAGCTAGTTTTTCATGGGATAATTTATCAAAGGCCACACTGAGAAATATAAATTTAGAGGTTAGCCCTGGTCAGAAGGTGGCTATATGTGGAGAAGTTGGCTCAGGAAAATCAAGCCTCCTAGCTGCAATTCTCGGAGAAATTCCAAATGTTCAAGGAACTATTCAAGTTTTTGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGACAGGGACAATACAGGAGAATATTCTATTTGGTTCTGCTATGGATAGTGAAAGATACCGAGAAACGCTTGAGAGATGTTCGCTTGTAAAGGACCTTGAGTTACTGCCCTATGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAATCTAAGTGGAGGTCAGAAGCAGCGGATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGACATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCTACTAACCTATTTAATGAATATGTTATGGAAGCACTTTCAGGGAAGACAGTCTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCAGTCTTGTTGATGTTGGATGGGGAAATCCTTGAAGCAGCTCCTTATTATCAGTTATTGGCCTCAAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCAGATGTCCCTTCTGACCAAAATTCTGGAACATCATCCAGAGAGATTAAGAAGGCTTATGTAGAGAAGAAATTGATAGGAAATAAAGGTGACCAGTTGATTAAGATAGAAGAGAGAGAAATAGGAGACACTGGTTTGAGGCCATACAAACAGTATCTGAAACAGAACAAAGGGGTCTTGTACTTCTCAGCCGCTGTTCTTTTACACCTGACATTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCTGTCGATTGGATTTTCTGCAACATTTGTTTTGCTATTCAGATCTCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTGAACTCTCTATTTCGTGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCGGTCTTATCTTTGCTTGTGGAGCTACCATAAATGCTTACGCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACTAAGTCTTTTGTAGCAAACCATCTTGCAGAGTCTGTATCAGGTGCCATTACAATAAGAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATATTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTTGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGCGCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACCAGTGCACTATAGCAAATTACATCATTTCTGTTGAAAGACTAAATCAATACACACATGTACCAAGCGAAGCCCCTGAAGTTATAGAGGGAAACCGTCCACCTCCCAACTGGCCTGTTGTAGGAAAAGTGGAAATACAAAATTTGCAGATAAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATCAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTAATCGGTGCTCTATTTCGTCTGGTGGAGCCAGCCGGAGGGAAGATTATAGTCGATGGCATTGACATCTCTACTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTCAATGGGACTGTGAGATACAATTTGGATCCCTTAGATCAACATTCAGACCAGAAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGAGAGGCTGTTGAGGAGAAAGAAAAAGGCTTAGACTCGTTAGTTGTGGATGATGGATCAAACTGGAGCATGGGGCAAAGGCAACTGTTCTGTTTGGGCCGTGCTCTTTTGAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACAGCTTCCATCGACAATGCAACTGATATGATTTTACAGAAGACTATACGGACTGAATTTGCAGATTGTACAGTTATTACAGTAGCTCACAGGATACCGACTGTGATGGATTGCACAATGGTCCTTGCCATTAGTGACGGGAAAATAGTGGAGTATGATGAGCCAATGAACCTAATGAAAAGAGAAGGCTCACTATTCGGGCAGCTTGTCAAGGAGTACTGGTCTCATCTCCAGTCTGCAGAATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1334

Amino Acids

148.34

Weight (kDa)

6.4

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	164 - 429	3.2e-24	ABC transporter transmembrane region
ABC_tran	PF00005	496 - 630	6.8e-23	ABC transporter
ABC_membrane	PF00664	771 - 1034	1.5e-26	ABC transporter transmembrane region
ABC_tran	PF00005	1104 - 1252	6.8e-25	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	147, 1046
Acc16I	TGCGCA	1 cut(s)	3001
AccB1I	GGYRCC	2 cut(s)	1375, 2861
AccI	GTMKAC	1 cut(s)	3383
AciI	CCGC	4 cut(s)	34, 1828, 2325, 2896
AclWI	GGATC	9 cut(s)	428, 1648, 1661, 1877, 2813, 3326, 3542, 3555, 3670
AcoI	YGGCCR	2 cut(s)	615, 3361
AcuI	CTGAAG	1 cut(s)	3228
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	8 cut(s)	671, 1059, 1143, 2315, 2700, 3192, 3820, 3968
AfiI	CCNNNNNNNGG	6 cut(s)	212, 484, 1288, 2902, 3251, 3425
AflII	CTTAAG	2 cut(s)	518, 673
AflIII	ACRYGT	3 cut(s)	609, 3105, 3187
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	115, 1513
AleI	CACNNNNGTG	2 cut(s)	295, 774
Alw21I	GWGCWC	5 cut(s)	1849, 2557, 3140, 3400, 3712
Alw26I	GTCTC	3 cut(s)	1201, 2253, 3978
Alw44I	GTGCAC	2 cut(s)	2553, 3136
AlwI	GGATC	9 cut(s)	428, 1648, 1661, 1877, 2813, 3326, 3542, 3555, 3670
AlwNI	CAGNNNCTG	4 cut(s)	2290, 2327, 2536, 2852
AoxI	GGCC	9 cut(s)	193, 615, 904, 1479, 2067, 2273, 3242, 3361, 3703
ApaLI	GTGCAC	2 cut(s)	2553, 3136
AspLEI	GCGC	3 cut(s)	1281, 3002, 3082
AspS9I	GGNCC	6 cut(s)	542, 1291, 1750, 2089, 3703, 3871
AsuNHI	GCTAGC	1 cut(s)	2936
AvaII	GGWCC	5 cut(s)	542, 1291, 1750, 2089, 3871
AxyI	CCTNAGG	1 cut(s)	1311
BaeGI	GKGCMC	2 cut(s)	2557, 3140
BaeI	ACNNNNGTAYC	2 cut(s)	3174, 3207
BalI	TGGCCA	1 cut(s)	617
BamHI	GGATCC	2 cut(s)	1653, 3547
BanI	GGYRCC	2 cut(s)	1375, 2861
BauI	CACGAG	1 cut(s)	1842
BbsI	GAAGAC	6 cut(s)	354, 432, 467, 1964, 2898, 3797
Bbv12I	GWGCWC	5 cut(s)	1849, 2557, 3140, 3400, 3712
BbvCI	CCTCAGC	1 cut(s)	576
BceAI	ACGGC	1 cut(s)	3690
BciT130I	CCWGG	2 cut(s)	117, 1515
BciVI	GTATCC	2 cut(s)	2586, 3837
BcoDI	GTCTC	3 cut(s)	1201, 2253, 3978
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	8 cut(s)	98, 231, 858, 908, 1452, 1568, 2702, 2937
BfmI	CTRYAG	6 cut(s)	90, 2765, 3018, 3141, 3462, 3987
BfoI	RGCGCY	1 cut(s)	3083
BfrI	CTTAAG	2 cut(s)	518, 673
BfuI	GTATCC	2 cut(s)	2586, 3837
BglI	GCCNNNNNGGC	1 cut(s)	3369
BglII	AGATCT	2 cut(s)	2477, 2629
BmcAI	AGTACT	2 cut(s)	2700, 3968
Bme1390I	CCNGG	2 cut(s)	117, 1515
Bme18I	GGWCC	5 cut(s)	542, 1291, 1750, 2089, 3871
BmgT120I	GGNCC	6 cut(s)	542, 1291, 1750, 2089, 3703, 3871
BmiI	GGNNCC	7 cut(s)	839, 1293, 1377, 1655, 2863, 3417, 3549
BmrFI	CCNGG	2 cut(s)	117, 1515
BmsI	GCATC	5 cut(s)	668, 796, 929, 1891, 2519
BmtI	GCTAGC	1 cut(s)	2940
BpiI	GAAGAC	6 cut(s)	354, 432, 467, 1964, 2898, 3797
BplI	GAGNNNNNCTC	2 cut(s)	1373, 1405
BpmI	CTGGAG	3 cut(s)	848, 3691, 3965
Bpu10I	CCTNAGC	3 cut(s)	576, 1148, 1549
BpuEI	CTTGAG	8 cut(s)	359, 1007, 1391, 1748, 1775, 2056, 2525, 3489
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	2804
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	1201, 3978
BsaJI	CCNNGG	2 cut(s)	1338, 1513
BsaWI	WCCGGW	1 cut(s)	1186
BsaXI	ACNNNNNCTCC	2 cut(s)	3956, 3986
Bsc4I	CCNNNNNNNGG	6 cut(s)	212, 484, 1288, 2902, 3251, 3425
Bse21I	CCTNAGG	1 cut(s)	1311
Bse3DI	GCAATG	2 cut(s)	1238, 2414
Bse8I	GATNNNNATC	1 cut(s)	2804
BseBI	CCWGG	2 cut(s)	117, 1515
BseDI	CCNNGG	2 cut(s)	1338, 1513
BseGI	GGATG	7 cut(s)	811, 1885, 2032, 2168, 2385, 3298, 3661
BseJI	GATNNNNATC	1 cut(s)	2804
BseLI	CCNNNNNNNGG	6 cut(s)	212, 484, 1288, 2902, 3251, 3425
BseMI	GCAATG	2 cut(s)	1238, 2414
BseMII	CTCAG	8 cut(s)	404, 567, 1302, 1478, 1563, 2334, 2543, 3470
BseRI	GAGGAG	4 cut(s)	195, 1133, 3635, 3733
BseSI	GKGCMC	2 cut(s)	2557, 3140
BsgI	GTGCAG	2 cut(s)	918, 1370
BshFI	GGCC	9 cut(s)	195, 617, 906, 1481, 2069, 2275, 3244, 3363, 3705
BshNI	GGYRCC	2 cut(s)	1375, 2861
BsiHKAI	GWGCWC	5 cut(s)	1849, 2557, 3140, 3400, 3712
BsiSI	CCGG	3 cut(s)	1187, 3364, 3423
BslFI	GGGAC	3 cut(s)	1678, 2126, 3541
BslI	CCNNNNNNNGG	6 cut(s)	212, 484, 1288, 2902, 3251, 3425
BsmAI	GTCTC	3 cut(s)	1201, 2253, 3978
BsmFI	GGGAC	3 cut(s)	1678, 2126, 3541
BsmI	GAATGC	2 cut(s)	1099, 1864
BsnI	GGCC	9 cut(s)	195, 617, 906, 1481, 2069, 2275, 3244, 3363, 3705
Bso31I	GGTCTC	2 cut(s)	1201, 3978
Bsp1286I	GDGCHC	5 cut(s)	1849, 2557, 3140, 3400, 3712
Bsp1407I	TGTACA	2 cut(s)	1141, 3818
BspACI	CCGC	4 cut(s)	34, 1828, 2325, 2896
BspANI	GGCC	9 cut(s)	195, 617, 906, 1481, 2069, 2275, 3244, 3363, 3705
BspCNI	CTCAG	8 cut(s)	405, 568, 1303, 1479, 1562, 2333, 2542, 3471
BspHI	TCATGA	2 cut(s)	786, 3472
BspLI	GGNNCC	7 cut(s)	839, 1293, 1377, 1655, 2863, 3417, 3549
BspMAI	CTGCAG	2 cut(s)	3022, 3991
BspOI	GCTAGC	1 cut(s)	2940
BspPI	GGATC	9 cut(s)	428, 1648, 1661, 1877, 2813, 3326, 3542, 3555, 3670
BspT107I	GGYRCC	2 cut(s)	1375, 2861
BspTI	CTTAAG	2 cut(s)	518, 673
BspTNI	GGTCTC	2 cut(s)	1201, 3978
BsrDI	GCAATG	2 cut(s)	1238, 2414
BsrGI	TGTACA	2 cut(s)	1141, 3818
BssECI	CCNNGG	2 cut(s)	1338, 1513
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	1842
BssT1I	CCWWGG	1 cut(s)	1338
Bst2BI	CACGAG	1 cut(s)	1842
Bst2UI	CCWGG	2 cut(s)	117, 1515
Bst6I	CTCTTC	4 cut(s)	159, 1396, 2238, 3524
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	2 cut(s)	518, 673
BstAPI	GCANNNNNTGC	2 cut(s)	1910, 3011
BstAUI	TGTACA	2 cut(s)	1141, 3818
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	8 cut(s)	419, 683, 1219, 1245, 1998, 2133, 2938, 3420
BstEII	GGTNACC	1 cut(s)	2222
BstENI	CCTNNNNNAGG	2 cut(s)	1286, 3249
BstF5I	GGATG	7 cut(s)	811, 1885, 2032, 2168, 2385, 3298, 3661
BstH2I	RGCGCY	1 cut(s)	3083
BstHHI	GCGC	3 cut(s)	1281, 3002, 3082
BstMAI	GTCTC	3 cut(s)	1201, 2253, 3978
BstMWI	GCNNNNNNNGC	9 cut(s)	917, 965, 1343, 1901, 1910, 2666, 3011, 3020, 3369
BstNI	CCWGG	2 cut(s)	117, 1515
BstNSI	RCATGY	5 cut(s)	1032, 1221, 1247, 3109, 3191
BstPI	GGTNACC	1 cut(s)	2222
BstSCI	CCNGG	2 cut(s)	115, 1513
BstSFI	CTRYAG	6 cut(s)	90, 2765, 3018, 3141, 3462, 3987
BstSLI	GKGCMC	2 cut(s)	2557, 3140
BstV2I	GAAGAC	6 cut(s)	354, 432, 467, 1964, 2898, 3797
BstX2I	RGATCY	4 cut(s)	1653, 2477, 2629, 3547
BstXI	CCANNNNNNTGG	2 cut(s)	2159, 2743
BstYI	RGATCY	4 cut(s)	1653, 2477, 2629, 3547
Bsu36I	CCTNAGG	1 cut(s)	1311
BsuI	GTATCC	2 cut(s)	2586, 3837
BsuRI	GGCC	9 cut(s)	195, 617, 906, 1481, 2069, 2275, 3244, 3363, 3705
BtsCI	GGATG	7 cut(s)	811, 1885, 2032, 2168, 2385, 3298, 3661
BtsI	GCAGTG	3 cut(s)	671, 2784, 3379
BtsIMutI	CAGTG	9 cut(s)	459, 478, 671, 1484, 1779, 2262, 2784, 3140, 3379
Cac8I	GCNNGC	8 cut(s)	419, 683, 1219, 1245, 1998, 2133, 2938, 3420
CaiI	CAGNNNCTG	4 cut(s)	2290, 2327, 2536, 2852
CciI	TCATGA	2 cut(s)	786, 3472
CfoI	GCGC	3 cut(s)	1281, 3002, 3082
Cfr13I	GGNCC	6 cut(s)	542, 1291, 1750, 2089, 3703, 3871
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	8 cut(s)	670, 1058, 1142, 2314, 2699, 3191, 3819, 3967
CspCI	CAANNNNNGTGG	4 cut(s)	647, 682, 1792, 1827
CviQI	GTAC	8 cut(s)	670, 1058, 1142, 2314, 2699, 3191, 3819, 3967
DraI	TTTAAA	1 cut(s)	595
EaeI	YGGCCR	2 cut(s)	615, 3361
Eam1104I	CTCTTC	4 cut(s)	159, 1396, 2238, 3524
EarI	CTCTTC	4 cut(s)	159, 1396, 2238, 3524
Eco130I	CCWWGG	1 cut(s)	1338
Eco31I	GGTCTC	2 cut(s)	1201, 3978
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	5 cut(s)	542, 1291, 1750, 2089, 3871
Eco57I	CTGAAG	1 cut(s)	3228
Eco81I	CCTNAGG	1 cut(s)	1311
Eco91I	GGTNACC	1 cut(s)	2222
EcoNI	CCTNNNNNAGG	2 cut(s)	1286, 3249
EcoO109I	RGGNCCY	3 cut(s)	1291, 1750, 2089
EcoO65I	GGTNACC	1 cut(s)	2222
EcoRI	GAATTC	3 cut(s)	304, 824, 1233
EcoRII	CCWGG	2 cut(s)	115, 1513
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	1338
EcoT22I	ATGCAT	1 cut(s)	1075
ErhI	CCWWGG	1 cut(s)	1338
FalI	AAGNNNNNCTT	2 cut(s)	1949, 1981
FaqI	GGGAC	3 cut(s)	1678, 2126, 3541
FauNDI	CATATG	1 cut(s)	473
FblI	GTMKAC	1 cut(s)	3383
FokI	GGATG	7 cut(s)	818, 1892, 2039, 2155, 2392, 3305, 3668
FspBI	CTAG	8 cut(s)	98, 231, 858, 908, 1452, 1568, 2702, 2937
FspI	TGCGCA	1 cut(s)	3001
GlaI	GCGC	3 cut(s)	1280, 3001, 3081
GsuI	CTGGAG	3 cut(s)	848, 3691, 3965
HaeII	RGCGCY	1 cut(s)	3083
HaeIII	GGCC	9 cut(s)	195, 617, 906, 1481, 2069, 2275, 3244, 3363, 3705
HapII	CCGG	3 cut(s)	1187, 3364, 3423
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	3 cut(s)	1281, 3002, 3082
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	3 cut(s)	1279, 3000, 3080
HinP1I	GCGC	3 cut(s)	1279, 3000, 3080
HincII	GTYRAC	2 cut(s)	765, 2487
HindII	GTYRAC	2 cut(s)	765, 2487
HindIII	AAGCTT	1 cut(s)	995
HpaI	GTTAAC	1 cut(s)	2487
HpaII	CCGG	3 cut(s)	1187, 3364, 3423
Hpy166II	GTNNAC	7 cut(s)	765, 2434, 2487, 2555, 3138, 3230, 3384
Hpy8I	GTNNAC	7 cut(s)	765, 2434, 2487, 2555, 3138, 3230, 3384
HpyCH4IV	ACGT	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	9 cut(s)	917, 965, 1343, 1901, 1910, 2666, 3011, 3020, 3369
HpySE526I	ACGT	1 cut(s)	609
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	3 cut(s)	1279, 3000, 3080
KspAI	GTTAAC	1 cut(s)	2487
LmnI	GCTCC	8 cut(s)	119, 406, 964, 1120, 2053, 2666, 3415, 3672
LweI	GCATC	5 cut(s)	668, 796, 929, 1891, 2519
MaeI	CTAG	8 cut(s)	98, 231, 858, 908, 1452, 1568, 2702, 2937
MaeII	ACGT	1 cut(s)	609
MfeI	CAATTG	2 cut(s)	737, 2420
MflI	RGATCY	4 cut(s)	1653, 2477, 2629, 3547
MhlI	GDGCHC	5 cut(s)	1849, 2557, 3140, 3400, 3712
MlsI	TGGCCA	1 cut(s)	617
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	6 cut(s)	8, 227, 1014, 2567, 2858, 3635
MmeI	TCCRAC	3 cut(s)	42, 2004, 3068
Mox20I	TGGCCA	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	9 cut(s)	519, 594, 674, 1443, 1926, 2181, 2235, 2486, 3101
MslI	CAYNNNNRTG	3 cut(s)	295, 774, 2741
Msp20I	TGGCCA	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	1828, 2327
MspCI	CTTAAG	2 cut(s)	518, 673
MspI	CCGG	3 cut(s)	1187, 3364, 3423
MspR9I	CCNGG	2 cut(s)	117, 1515
MunI	CAATTG	2 cut(s)	737, 2420
Mva1269I	GAATGC	2 cut(s)	1099, 1864
MvaI	CCWGG	2 cut(s)	117, 1515
MwoI	GCNNNNNNNGC	9 cut(s)	917, 965, 1343, 1901, 1910, 2666, 3011, 3020, 3369
NdeI	CATATG	1 cut(s)	473
NheI	GCTAGC	1 cut(s)	2936
NlaIV	GGNNCC	7 cut(s)	839, 1293, 1377, 1655, 2863, 3417, 3549
NmuCI	GTSAC	7 cut(s)	226, 288, 526, 654, 1972, 2222, 3884
NsbI	TGCGCA	1 cut(s)	3001
NsiI	ATGCAT	1 cut(s)	1075
NspI	RCATGY	5 cut(s)	1032, 1221, 1247, 3109, 3191
OliI	CACNNNNGTG	2 cut(s)	295, 774
PaeI	GCATGC	2 cut(s)	1221, 1247
PagI	TCATGA	2 cut(s)	786, 3472
PciI	ACATGT	2 cut(s)	3105, 3187
PctI	GAATGC	2 cut(s)	1099, 1864
PfeI	GAWTC	5 cut(s)	647, 1831, 2006, 2977, 3992
PflFI	GACNNNGTC	1 cut(s)	2093
PfoI	TCCNGGA	1 cut(s)	115
PleI	GAGTC	6 cut(s)	8, 226, 1014, 2567, 2857, 3635
PpsI	GAGTC	6 cut(s)	8, 226, 1014, 2567, 2857, 3635
Ppu21I	YACGTR	1 cut(s)	610
PpuMI	RGGWCCY	3 cut(s)	1291, 1750, 2089
PscI	ACATGT	2 cut(s)	3105, 3187
PsiI	TTATAA	2 cut(s)	147, 1046
Psp5II	RGGWCCY	3 cut(s)	1291, 1750, 2089
Psp6I	CCWGG	2 cut(s)	115, 1513
PspEI	GGTNACC	1 cut(s)	2222
PspGI	CCWGG	2 cut(s)	115, 1513
PspN4I	GGNNCC	7 cut(s)	839, 1293, 1377, 1655, 2863, 3417, 3549
PspPI	GGNCC	6 cut(s)	542, 1291, 1750, 2089, 3703, 3871
PspPPI	RGGWCCY	3 cut(s)	1291, 1750, 2089
PstI	CTGCAG	2 cut(s)	3022, 3991
PstNI	CAGNNNCTG	4 cut(s)	2290, 2327, 2536, 2852
PsuI	RGATCY	4 cut(s)	1653, 2477, 2629, 3547
PsyI	GACNNNGTC	1 cut(s)	2093
RsaI	GTAC	8 cut(s)	671, 1059, 1143, 2315, 2700, 3192, 3820, 3968
RsaNI	GTAC	8 cut(s)	670, 1058, 1142, 2314, 2699, 3191, 3819, 3967
RseI	CAYNNNNRTG	3 cut(s)	295, 774, 2741
SaqAI	TTAA	9 cut(s)	519, 594, 674, 1443, 1926, 2181, 2235, 2486, 3101
Sau96I	GGNCC	6 cut(s)	542, 1291, 1750, 2089, 3703, 3871
ScaI	AGTACT	2 cut(s)	2700, 3968
SchI	GAGTC	6 cut(s)	8, 227, 1014, 2567, 2858, 3635
ScrFI	CCNGG	2 cut(s)	117, 1515
SduI	GDGCHC	5 cut(s)	1849, 2557, 3140, 3400, 3712
SfaNI	GCATC	5 cut(s)	668, 796, 929, 1891, 2519
SfcI	CTRYAG	6 cut(s)	90, 2765, 3018, 3141, 3462, 3987
SinI	GGWCC	5 cut(s)	542, 1291, 1750, 2089, 3871
SmiMI	CAYNNNNRTG	3 cut(s)	295, 774, 2741
SpeI	ACTAGT	1 cut(s)	230
SphI	GCATGC	2 cut(s)	1221, 1247
SsiI	CCGC	4 cut(s)	34, 1828, 2325, 2896
SspI	AATATT	2 cut(s)	1681, 2774
SspMI	CTAG	8 cut(s)	98, 231, 858, 908, 1452, 1568, 2702, 2937
StyD4I	CCNGG	2 cut(s)	115, 1513
StyI	CCWWGG	1 cut(s)	1338
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	6 cut(s)	1300, 2441, 3313, 3441, 3607, 3762
TaqII	GACCGA	1 cut(s)	2636
TatI	WGTACW	5 cut(s)	1141, 2313, 2698, 3818, 3966
TauI	GCSGC	1 cut(s)	2327
TfiI	GAWTC	5 cut(s)	647, 1831, 2006, 2977, 3992
Tru1I	TTAA	9 cut(s)	519, 594, 674, 1443, 1926, 2181, 2235, 2486, 3101
Tru9I	TTAA	9 cut(s)	519, 594, 674, 1443, 1926, 2181, 2235, 2486, 3101
TscAI	CASTG	9 cut(s)	459, 485, 671, 1491, 1786, 2269, 2791, 3140, 3379
TseFI	GTSAC	7 cut(s)	226, 288, 526, 654, 1972, 2222, 3884
Tsp45I	GTSAC	7 cut(s)	226, 288, 526, 654, 1972, 2222, 3884
TspGWI	ACGGA	3 cut(s)	426, 884, 3814
TspRI	CASTG	9 cut(s)	459, 485, 671, 1491, 1786, 2269, 2791, 3140, 3379
Tth111I	GACNNNGTC	1 cut(s)	2093
Vha464I	CTTAAG	2 cut(s)	518, 673
VneI	GTGCAC	2 cut(s)	2553, 3136
VpaK11BI	GGWCC	5 cut(s)	542, 1291, 1750, 2089, 3871
XagI	CCTNNNNNAGG	2 cut(s)	1286, 3249
XbaI	TCTAGA	1 cut(s)	97
XceI	RCATGY	5 cut(s)	1032, 1221, 1247, 3109, 3191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3237
XmiI	GTMKAC	1 cut(s)	3383
XspI	CTAG	8 cut(s)	98, 231, 858, 908, 1452, 1568, 2702, 2937
ZrmI	AGTACT	2 cut(s)	2700, 3968
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.