Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

66194744 .. 66201165

Gene Structure 6422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG438800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4425 bp

ATGACGGAGGATTTATGGACTGGATTTTGTGGGGAATCTGAAGATTCTGAGAGTTTGAGTTTTCGGTTTCTGATTCATCCTACTTCATGCATTAATCACGCACTGATCATTTTCCTAGACATAGTTCTTCTTGTGGCGCTCTTGTTCAGTATGTTTATCAAGTCATCAAAAAGAGTTCATGTTCCAGCACGATTTCTAGGCTTTTCGAGTTGGCAAATAGTCTCGGCCATTTTCAATGGCGCTCTTGGATTTGTGTACTTGTGCTTGGGAGCCTGGAATTTAGAAGAGGAGCTGAGGAATACACGTACTGCTTTGCCTTTGAATTGGTGGTTACTTGGTCTCTTTCAAGGCTTCACATGGTTGTTTTTGAGCTTAACTCTAAGCATCAGGACGAAGCAACTGCCAAGACAACCTTCAAGAGTGATGTGCATCCTGGCTTTTTTGTTTTCTGGAGTTGTCTTTGCTCTATCGCTCTTCACAGTCATTTTCAGAAATGAAATGTCGGTTAAGATAGTACTAGATATCCTGACTTTTCCAGGAGCAGCATTGTTGCTGCTATGTGTTTTCAAGGGGTATAAGCATGAAGATGGTGATGAGATCATCAGTGACGATGGCCTTTATGCCCCTCTCAATGGTGAGTCCAATGGCATTAGTAAAGGTAATGATCATGCAACCCCATTTAGCAAAGCTGGATTGTTAAGTAAAATGTCATTTTGGTGGTTAAATTCATTGATGAAAAGAGGTAGGGAGAAAACTCTGGAGGATGAAGATATACCGAAGTTGCGCAAGGAAGATAGAGCAGAAAGTTGCTATGCGATGTTCTTGGAGCAACTAAGCAAGCAGAAACAAATTGAGCCATCTTCCCAGCCATCAGTATTAAAGACTATAATCCTATGTCACTGGAAGGAGATTTTACTATCTGGTTTCTTTGCTTTGCTGAAGATACTCACTATCTGTGCTGGTCCTTTGCTTCTCAATGCCTTCATTTTGGTTGCAGAGGGAAATGAAAGTTTCGAGCATGAAGGTTATCTGTTAGCCGGAGCACTTTTTGTTTCGAAAACCATTGAATCCTTGTCACAGAGGCAGTGGTACTTCAGGTGTAGGCTTATTGGTTTGAAAGTTAGGTCTTTGCTGACAGCAGCCATTTACAAAAAGCAATTAAGATTATCTAATGCTGCTAAGTTGACACACTCAGGTGGTGAGATCATGAATTATGTTACTGTGGATGCTTATAGGATTGGAGAGTTTCCATTTTGGTTCCATAAGACTTGGACTACTAGCGTCCAGCTCTGTTTTTCTTTGGTAATTTTTTTCCGTGCAGTTGGCCTAGCTACATTTGCAGCCTTGGTGGTGATACTTTTGAGTGTGATTTGCAATGCTCCAGTTGCTAAGCTACAGCATAAGTTTCAGAGTAAGCTTATGAAGGCACAAGATGAAAGGCTCAAGGCTAGTTCTGAGGCTCTAGTGAACATGAAGGTCTTAAAGTTATATGCATGGGAAACACATTTCAAGAAGGCAATAGAGAAGTTAAGGAAGGAGGAGCACAAATGGTTATCTGCAATGCTGTTAAGAAGAGCATATAGTACTTATCTCTTTTGGTCAACTCCTGTTTTGGTCTCTACTGCAACATTTGGGGCATGCTATTTTCTCAAAATTCCGTTACATGCGAGCAATGTTTTCACTTTTATCTCAACTTTGAGACTTGTTCAGGACCCCATTCAAACCATACCTGATGTTTTTGCGGTTGTCATTCAAGCCAAGGTTGCATTTGGTCGTATTGTGAAATTCCTTGAGGCACCTGAGCTGCAAACTTCAAATGTCCGGAAGTGCAACATGAAGAATGTAGCTAACTCCATTGAAATTAAGTCAGCTAATTTTTCATGGGAAGAGAATTTATCGAAGTCCATACTGAGAAATATAAATTTAGAGGTTAGACCTGGTGAAAAGGTGGCCATATGTGGTGAAGTCGGCTCAGGCAAGTCAAGCCTTCTAGCTGCAATTCTTGGAGAAATTCCAAATGTGCAAGGAAATATTCAAGTTTATGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGTCAGGAACTATACAAGAAAATATTCTCTTTGGTTCTTGTATGGATAGTCAGAGATACCGAGAGACTCTTGAGAGATGCTCACTAGTAAAGGACCTTGAGCTGCTTCCCTATGATGACCTTACTGAAATAGGGGAGAGAGGGGTGAATCTAAGTGGAGGTCAGAAGCAGCGGATCCAACTTGCACGCGCTCTCTATCAGGATGCTGATATATATCTATTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAACTTATTTAATGAATATGTAATGGAAGCACTTTCAGGAAAGACAGTACTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTTCGTTTTGTTGATGATGGATGGGGAGATCCTACAAGCAGCTCCTTATCAGCATCTATTGGCTTTAAGCCAAGAATTCCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCCGAAAGGCTTTCAGATGTCACTTCTGCTCAAAATTCTGGAATATCATCTAGAGAGATTAAGAAGAGTTATGTTGAGAAGCCATTAAAAGAAAATAAAGTTGACCAATTGATTAAACTAGAAGAGAGAGAAACAGGTGACACAGGTTTTAAGCCATACATACTGTATCTGAAGCAGAACAAAGGGTTCCTGTACTTCTCAATTGCCGTTTGTCTACACTTCACTTCCATTATGAGTCAGATTGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCGAGTATTAGCACATTACGGTTGCTTGTGGTTTACTTATCGATTGGATTCTCCACAACATTTATTTTTCTGTTTAGATCTCTTGCAGCAGTTGTCGGGGGTCTTGAGACATCAAAGTCTTTGTTCTCACAACTACTAAACTCCCTTTTTCGTGCACCCATGTCATTTTATGACTCAACACCACTGGGAAGGATACTTAGTCGGGTTTCATCTGATCTGAGTATCACAGATCTTGATATTCCATTCAGCATCGTATTTGCTTGTGGAGTTACCATGAATGCCTATTGCAATCTTGGAGTATTGACTGTTGTTACCTGGCAAGTCCTGTTTGTCTCCATCCCAATGGTCTGTGTCGCAATTCAGCTACAGAAGTACTATTTTTCCACTGCAAAAGAGTTGATGAGGATCAATGGAACAACTAAGTCCTTTGTAGCAAACCATCTCGCAGAGTCTGTATCAGGAGCCATTACCATAAGAGCTTTCGATGAAGAAGAGCGCTTCTCGGCAAAGAACTTTCACCTCATTGACACAAATGCTAGTCCTTATTTCCACAATTTTTCTGCAAATGAGTGGTTAATCCAACGATTAGGGATGATCAGTGCGGTGGTTCTTGCCTCTGCAGCACTTTGTATGGTTTTGCTTCCTCATGGAACTTTTACCTCTGGGTTTATTGGGATGGCACTTTCTTATGGTCTATCATTAAATGTGTCCTTGATCGACTCAATTCAGAACCAGTGCACTATAGCAAATTATATCATTTCTGTTGAAAGACTAAATCAATACATGCACATTCCGAGTGAAGCCCCAGAAGTAATAGAGGGAAACCGGCCACCAGCCAACTGGCCTGTTGTAGGAAAAGTGGAGATACAAAATTTGCAGATAAGATATAGGGATGACACACCATTTGTACTTCGAGGGATTAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTCATCGGTGCTCTATTTCGGCTGGTCGAGCCAACCAGAGGGAAGGTCATAGTCGATGGCATTGACATCTGCACTATAGGACTTCATGATCTGAGATCAAGATTCGGAATAATACCTCAAGACCCTACTCTCTTTAATGGCACCGTCAGATACAATTTGGACCCCTTATCTCAACATTCAGACCAAGAAATATGGGAGGTTCTTGGAAAGTGTCAGCTTCGAGAGGTTGTTGAGGAGAAAGAAAAAGGCTTAGACTCGTTAGTTGTGCATGATGGATCAAACTGGAGCATGGGGCAAAGGCAACTGTTCTGCCTCGGGCGCGCTCTTCTAAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACTGCATCCATCGACAATGCAACTGATACGATCCTGCAGAAGACTATAAGGACTGAGTTTGAATCTTGTACAGTAATTACAGTAGCCCACAGGATACCAACTGTGATGGATTGCACAATGGTTCTTGCCATTAGTGATGGAAAGATAGTGGAGTATGATGAGCCAATGAGGTTGATGAAGAGAGAAGGCTCGCTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCATCTCCAGTCTGCAGAATCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1474

Amino Acids

165.25

Weight (kDa)

7.32

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	3 - 194	4.4e-76	ABCC10 N-terminal domain
ABC_membrane	PF00664	305 - 572	5.1e-24	ABC transporter transmembrane region
ABC_tran	PF00005	637 - 771	4.6e-23	ABC transporter
ABC_membrane	PF00664	912 - 1171	1.5e-23	ABC transporter transmembrane region
ABC_tran	PF00005	1245 - 1393	1.8e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2938
Acc16I	TGCGCA	1 cut(s)	785
AccB1I	GGYRCC	2 cut(s)	1795, 3950
AccI	GTMKAC	2 cut(s)	2758, 3806
AccII	CGCG	2 cut(s)	2268, 4131
AccIII	TCCGGA	1 cut(s)	1821
AciI	CCGC	3 cut(s)	1742, 2251, 3425
AclWI	GGATC	9 cut(s)	2071, 2084, 2248, 2261, 2300, 2452, 3236, 4093, 4198
AcoI	YGGCCR	4 cut(s)	225, 1950, 3650, 3784
AcuI	CTGAAG	4 cut(s)	60, 959, 1078, 2735
AfeI	AGCGCT	1 cut(s)	3320
AfiI	CCNNNNNNNGG	3 cut(s)	632, 3674, 3848
AflIII	ACRYGT	1 cut(s)	302
AhlI	ACTAGT	1 cut(s)	2164
AjnI	CCWGG	6 cut(s)	272, 432, 535, 1936, 2508, 3137
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AleI	CACNNNNGTG	1 cut(s)	1194
Alw21I	GWGCWC	5 cut(s)	1045, 1545, 2980, 3563, 3823
Alw26I	GTCTC	8 cut(s)	226, 344, 1621, 1693, 2138, 2924, 3160, 4401
Alw44I	GTGCAC	2 cut(s)	2976, 3559
AlwI	GGATC	9 cut(s)	2071, 2084, 2248, 2261, 2300, 2452, 3236, 4093, 4198
AlwNI	CAGNNNCTG	1 cut(s)	3275
Ama87I	CYCGRG	1 cut(s)	4124
Aor13HI	TCCGGA	1 cut(s)	1821
Aor51HI	AGCGCT	1 cut(s)	3320
AoxI	GGCC	7 cut(s)	225, 613, 1324, 1950, 3650, 3665, 3784
ApaLI	GTGCAC	2 cut(s)	2976, 3559
ArsI	GACNNNNNNTTYG	2 cut(s)	3710, 3742
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	2103
AspLEI	GCGC	7 cut(s)	139, 242, 786, 2270, 3321, 4131, 4133
AspS9I	GGNCC	5 cut(s)	962, 1711, 2173, 2512, 3970
AsuHPI	GGTGA	9 cut(s)	602, 647, 1211, 1363, 1952, 1973, 2236, 2693, 3332
AsuII	TTCGAA	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	4124
AvaII	GGWCC	5 cut(s)	962, 1711, 2173, 2512, 3970
BaeGI	GKGCMC	2 cut(s)	2980, 3563
BalI	TGGCCA	1 cut(s)	1952
BamHI	GGATCC	2 cut(s)	2076, 2253
BanI	GGYRCC	2 cut(s)	1795, 3950
BbsI	GAAGAC	1 cut(s)	4220
Bbv12I	GWGCWC	5 cut(s)	1045, 1545, 2980, 3563, 3823
BbvCI	CCTCAGC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	2735
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
BciVI	GTATCC	2 cut(s)	3009, 4260
BclI	TGATCA	3 cut(s)	105, 664, 3417
BcoDI	GTCTC	8 cut(s)	226, 344, 1621, 1693, 2138, 2924, 3160, 4401
BcuI	ACTAGT	1 cut(s)	2164
BfmI	CTRYAG	7 cut(s)	1394, 3188, 3441, 3564, 3885, 4208, 4410
BfoI	RGCGCY	3 cut(s)	140, 243, 3322
BfuI	GTATCC	2 cut(s)	3009, 4260
BglI	GCCNNNNNGGC	1 cut(s)	3792
BglII	AGATCT	2 cut(s)	2900, 3052
BlpI	GCTNAGC	1 cut(s)	1389
BmcAI	AGTACT	5 cut(s)	516, 1585, 2388, 3197, 4391
Bme1390I	CCNGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
Bme18I	GGWCC	5 cut(s)	962, 1711, 2173, 2512, 3970
BmeT110I	CYCGRG	1 cut(s)	4124
BmgT120I	GGNCC	5 cut(s)	962, 1711, 2173, 2512, 3970
BmrFI	CCNGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
BmrI	ACTGGG	1 cut(s)	3017
BmsI	GCATC	9 cut(s)	393, 438, 1216, 2147, 2272, 2314, 2491, 3081, 4187
BmuI	ACTGGG	1 cut(s)	3017
BpiI	GAAGAC	1 cut(s)	4220
BplI	GAGNNNNNCTC	6 cut(s)	361, 393, 2144, 2176, 3308, 3340
BpmI	CTGGAG	5 cut(s)	471, 779, 1365, 4114, 4388
Bpu10I	CCTNAGC	3 cut(s)	293, 1800, 1972
Bpu1102I	GCTNAGC	1 cut(s)	1389
Bpu14I	TTCGAA	1 cut(s)	1055
BpuEI	CTTGAG	6 cut(s)	1427, 1811, 2171, 2198, 2948, 3912
Bsa29I	ATCGAT	1 cut(s)	2864
BsaAI	YACGTR	1 cut(s)	305
BsaBI	GATNNNNATC	3 cut(s)	428, 2292, 3227
BsaI	GGTCTC	3 cut(s)	344, 1621, 4401
BsaJI	CCNNGG	3 cut(s)	1344, 1758, 4123
BsaWI	WCCGGW	1 cut(s)	1821
BsaXI	ACNNNNNCTCC	2 cut(s)	4379, 4409
Bsc4I	CCNNNNNNNGG	3 cut(s)	632, 3674, 3848
Bse118I	RCCGGY	1 cut(s)	3648
Bse3DI	GCAATG	3 cut(s)	1381, 1566, 1678
Bse8I	GATNNNNATC	3 cut(s)	428, 2292, 3227
BseAI	TCCGGA	1 cut(s)	1821
BseBI	CCWGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
BseCI	ATCGAT	1 cut(s)	2864
BseDI	CCNNGG	3 cut(s)	1344, 1758, 4123
BseJI	GATNNNNATC	3 cut(s)	428, 2292, 3227
BseLI	CCNNNNNNNGG	3 cut(s)	632, 3674, 3848
BseMI	GCAATG	3 cut(s)	1381, 1566, 1678
BsePI	GCGCGC	1 cut(s)	4129
BseRI	GAGGAG	3 cut(s)	302, 1553, 4058
BseSI	GKGCMC	2 cut(s)	2980, 3563
BseYI	CCCAGC	1 cut(s)	864
BsgI	GTGCAG	2 cut(s)	1338, 3865
Bsh1236I	CGCG	2 cut(s)	2268, 4131
BshFI	GGCC	7 cut(s)	227, 615, 1326, 1952, 3652, 3667, 3786
BshNI	GGYRCC	2 cut(s)	1795, 3950
BshVI	ATCGAT	1 cut(s)	2864
BsiHKAI	GWGCWC	5 cut(s)	1045, 1545, 2980, 3563, 3823
BsiHKCI	CYCGRG	1 cut(s)	4124
BsiSI	CCGG	4 cut(s)	1038, 1822, 3649, 3787
BslI	CCNNNNNNNGG	3 cut(s)	632, 3674, 3848
BsmAI	GTCTC	8 cut(s)	226, 344, 1621, 1693, 2138, 2924, 3160, 4401
BsmI	GAATGC	1 cut(s)	3106
BsnI	GGCC	7 cut(s)	227, 615, 1326, 1952, 3652, 3667, 3786
Bso31I	GGTCTC	3 cut(s)	344, 1621, 4401
BsoBI	CYCGRG	1 cut(s)	4124
Bsp119I	TTCGAA	1 cut(s)	1055
Bsp1286I	GDGCHC	5 cut(s)	1045, 1545, 2980, 3563, 3823
Bsp13I	TCCGGA	1 cut(s)	1821
Bsp1407I	TGTACA	1 cut(s)	4241
Bsp1720I	GCTNAGC	1 cut(s)	1389
BspACI	CCGC	3 cut(s)	1742, 2251, 3425
BspANI	GGCC	7 cut(s)	227, 615, 1326, 1952, 3652, 3667, 3786
BspDI	ATCGAT	1 cut(s)	2864
BspEI	TCCGGA	1 cut(s)	1821
BspFNI	CGCG	2 cut(s)	2268, 4131
BspHI	TCATGA	2 cut(s)	1206, 3895
BspMAI	CTGCAG	3 cut(s)	3445, 4212, 4414
BspPI	GGATC	9 cut(s)	2071, 2084, 2248, 2261, 2300, 2452, 3236, 4093, 4198
BspQI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
BspT104I	TTCGAA	1 cut(s)	1055
BspT107I	GGYRCC	2 cut(s)	1795, 3950
BspTNI	GGTCTC	3 cut(s)	344, 1621, 4401
BsrDI	GCAATG	3 cut(s)	1381, 1566, 1678
BsrFI	RCCGGY	1 cut(s)	3648
BsrGI	TGTACA	1 cut(s)	4241
BssAI	RCCGGY	1 cut(s)	3648
BssECI	CCNNGG	3 cut(s)	1344, 1758, 4123
BssHII	GCGCGC	1 cut(s)	4129
BssT1I	CCWWGG	2 cut(s)	1344, 1758
Bst2UI	CCWGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
Bst6I	CTCTTC	9 cut(s)	279, 479, 1567, 1881, 2603, 2661, 3309, 4140, 4346
BstAPI	GCANNNNNTGC	1 cut(s)	2333
BstAUI	TGTACA	1 cut(s)	4241
BstBAI	YACGTR	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	1055
BstC8I	GCNNGC	7 cut(s)	839, 1639, 1669, 2266, 2421, 4131, 4364
BstENI	CCTNNNNNAGG	1 cut(s)	3672
BstFNI	CGCG	2 cut(s)	2268, 4131
BstH2I	RGCGCY	3 cut(s)	140, 243, 3322
BstHHI	GCGC	7 cut(s)	139, 242, 786, 2270, 3321, 4131, 4133
BstMAI	GTCTC	8 cut(s)	226, 344, 1621, 1693, 2138, 2924, 3160, 4401
BstNI	CCWGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
BstNSI	RCATGY	3 cut(s)	1641, 1667, 3610
BstSCI	CCNGG	6 cut(s)	272, 432, 535, 1936, 2508, 3137
BstSFI	CTRYAG	7 cut(s)	1394, 3188, 3441, 3564, 3885, 4208, 4410
BstSLI	GKGCMC	2 cut(s)	2980, 3563
BstUI	CGCG	2 cut(s)	2268, 4131
BstV2I	GAAGAC	1 cut(s)	4220
BstX2I	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
BstXI	CCANNNNNNTGG	2 cut(s)	3166, 3663
BstYI	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
Bsu15I	ATCGAT	1 cut(s)	2864
BsuI	GTATCC	2 cut(s)	3009, 4260
BsuRI	GGCC	7 cut(s)	227, 615, 1326, 1952, 3652, 3667, 3786
BsuTUI	ATCGAT	1 cut(s)	2864
BtgZI	GCGATG	1 cut(s)	830
BtsI	GCAGTG	3 cut(s)	1091, 3207, 3802
Cac8I	GCNNGC	7 cut(s)	839, 1639, 1669, 2266, 2421, 4131, 4364
CaiI	CAGNNNCTG	1 cut(s)	3275
CciI	TCATGA	2 cut(s)	1206, 3895
CfoI	GCGC	7 cut(s)	139, 242, 786, 2270, 3321, 4131, 4133
Cfr10I	RCCGGY	1 cut(s)	3648
Cfr13I	GGNCC	5 cut(s)	962, 1711, 2173, 2512, 3970
ClaI	ATCGAT	1 cut(s)	2864
CseI	GACGC	1 cut(s)	1270
CsiI	ACCWGGT	1 cut(s)	1936
DrdI	GACNNNNNNGTC	1 cut(s)	2938
DseDI	GACNNNNNNGTC	1 cut(s)	2938
EaeI	YGGCCR	4 cut(s)	225, 1950, 3650, 3784
Eam1104I	CTCTTC	9 cut(s)	279, 479, 1567, 1881, 2603, 2661, 3309, 4140, 4346
EarI	CTCTTC	9 cut(s)	279, 479, 1567, 1881, 2603, 2661, 3309, 4140, 4346
Eco130I	CCWWGG	2 cut(s)	1344, 1758
Eco31I	GGTCTC	3 cut(s)	344, 1621, 4401
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	5 cut(s)	962, 1711, 2173, 2512, 3970
Eco47III	AGCGCT	1 cut(s)	3320
Eco57I	CTGAAG	4 cut(s)	60, 959, 1078, 2735
Eco88I	CYCGRG	1 cut(s)	4124
EcoNI	CCTNNNNNAGG	1 cut(s)	3672
EcoO109I	RGGNCCY	3 cut(s)	1711, 2173, 2512
EcoRI	GAATTC	1 cut(s)	2504
EcoRII	CCWGG	6 cut(s)	272, 432, 535, 1936, 2508, 3137
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	1344, 1758
EcoT22I	ATGCAT	2 cut(s)	92, 1495
ErhI	CCWWGG	2 cut(s)	1344, 1758
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FauNDI	CATATG	1 cut(s)	1955
FbaI	TGATCA	3 cut(s)	105, 664, 3417
FblI	GTMKAC	2 cut(s)	2758, 3806
FspI	TGCGCA	1 cut(s)	785
GlaI	GCGC	7 cut(s)	138, 241, 785, 2269, 3320, 4130, 4132
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	5 cut(s)	471, 779, 1365, 4114, 4388
HaeII	RGCGCY	3 cut(s)	140, 243, 3322
HaeIII	GGCC	7 cut(s)	227, 615, 1326, 1952, 3652, 3667, 3786
HapII	CCGG	4 cut(s)	1038, 1822, 3649, 3787
HgaI	GACGC	1 cut(s)	1270
HhaI	GCGC	7 cut(s)	139, 242, 786, 2270, 3321, 4131, 4133
Hin6I	GCGC	7 cut(s)	137, 240, 784, 2268, 3319, 4129, 4131
HinP1I	GCGC	7 cut(s)	137, 240, 784, 2268, 3319, 4129, 4131
HincII	GTYRAC	3 cut(s)	1185, 1602, 2647
HindII	GTYRAC	3 cut(s)	1185, 1602, 2647
HindIII	AAGCTT	1 cut(s)	1415
HpaII	CCGG	4 cut(s)	1038, 1822, 3649, 3787
HphI	GGTGA	9 cut(s)	602, 647, 1211, 1363, 1952, 1973, 2236, 2693, 3332
HpyCH4IV	ACGT	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	304
HspAI	GCGC	7 cut(s)	137, 240, 784, 2268, 3319, 4129, 4131
Kpn2I	TCCGGA	1 cut(s)	1821
Ksp22I	TGATCA	3 cut(s)	105, 664, 3417
LguI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
LweI	GCATC	9 cut(s)	393, 438, 1216, 2147, 2272, 2314, 2491, 3081, 4187
MabI	ACCWGGT	1 cut(s)	1936
MaeII	ACGT	1 cut(s)	304
MfeI	CAATTG	2 cut(s)	2651, 2745
MflI	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
MhlI	GDGCHC	5 cut(s)	1045, 1545, 2980, 3563, 3823
MlsI	TGGCCA	1 cut(s)	1952
MluNI	TGGCCA	1 cut(s)	1952
MlyI	GAGTC	7 cut(s)	647, 2140, 2788, 2990, 3281, 3536, 4058
MmeI	TCCRAC	2 cut(s)	2281, 3427
Mox20I	TGGCCA	1 cut(s)	1952
Mph1103I	ATGCAT	2 cut(s)	92, 1495
MroI	TCCGGA	1 cut(s)	1821
MroXI	GAANNNNTTC	1 cut(s)	2103
MscI	TGGCCA	1 cut(s)	1952
MslI	CAYNNNNRTG	4 cut(s)	585, 715, 1194, 3164
Msp20I	TGGCCA	1 cut(s)	1952
MspA1I	CMGCKG	1 cut(s)	2251
MspI	CCGG	4 cut(s)	1038, 1822, 3649, 3787
MspR9I	CCNGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
MunI	CAATTG	2 cut(s)	2651, 2745
Mva1269I	GAATGC	1 cut(s)	3106
MvaI	CCWGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
MvnI	CGCG	2 cut(s)	2268, 4131
NdeI	CATATG	1 cut(s)	1955
NmeAIII	GCCGAG	2 cut(s)	203, 3305
NmuCI	GTSAC	6 cut(s)	605, 896, 1074, 2395, 2563, 2681
NsbI	TGCGCA	1 cut(s)	785
NsiI	ATGCAT	2 cut(s)	92, 1495
NspI	RCATGY	3 cut(s)	1641, 1667, 3610
NspV	TTCGAA	1 cut(s)	1055
OliI	CACNNNNGTG	1 cut(s)	1194
PaeI	GCATGC	1 cut(s)	1641
PagI	TCATGA	2 cut(s)	1206, 3895
PauI	GCGCGC	1 cut(s)	4129
PciSI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
PctI	GAATGC	1 cut(s)	3106
PdmI	GAANNNNTTC	1 cut(s)	2103
PfeI	GAWTC	9 cut(s)	35, 44, 73, 1067, 2227, 2871, 3912, 4235, 4415
PflFI	GACNNNGTC	1 cut(s)	2516
PfoI	TCCNGGA	2 cut(s)	535, 2508
PleI	GAGTC	7 cut(s)	646, 2140, 2787, 2990, 3280, 3536, 4058
PpsI	GAGTC	7 cut(s)	646, 2140, 2787, 2990, 3280, 3536, 4058
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	3 cut(s)	1711, 2173, 2512
PshBI	ATTAAT	1 cut(s)	93
Psp5II	RGGWCCY	3 cut(s)	1711, 2173, 2512
Psp6I	CCWGG	6 cut(s)	272, 432, 535, 1936, 2508, 3137
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	6 cut(s)	272, 432, 535, 1936, 2508, 3137
PspPI	GGNCC	5 cut(s)	962, 1711, 2173, 2512, 3970
PspPPI	RGGWCCY	3 cut(s)	1711, 2173, 2512
PstI	CTGCAG	3 cut(s)	3445, 4212, 4414
PstNI	CAGNNNCTG	1 cut(s)	3275
PsuI	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
PsyI	GACNNNGTC	1 cut(s)	2516
PteI	GCGCGC	1 cut(s)	4129
RseI	CAYNNNNRTG	4 cut(s)	585, 715, 1194, 3164
SapI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
Sau96I	GGNCC	5 cut(s)	962, 1711, 2173, 2512, 3970
ScaI	AGTACT	5 cut(s)	516, 1585, 2388, 3197, 4391
SchI	GAGTC	7 cut(s)	647, 2140, 2788, 2990, 3281, 3536, 4058
ScrFI	CCNGG	6 cut(s)	274, 434, 537, 1938, 2510, 3139
SduI	GDGCHC	5 cut(s)	1045, 1545, 2980, 3563, 3823
SexAI	ACCWGGT	1 cut(s)	1936
SfaNI	GCATC	9 cut(s)	393, 438, 1216, 2147, 2272, 2314, 2491, 3081, 4187
SfcI	CTRYAG	7 cut(s)	1394, 3188, 3441, 3564, 3885, 4208, 4410
SfuI	TTCGAA	1 cut(s)	1055
SinI	GGWCC	5 cut(s)	962, 1711, 2173, 2512, 3970
SmiMI	CAYNNNNRTG	4 cut(s)	585, 715, 1194, 3164
SmlI	CTYRAG	6 cut(s)	1442, 1790, 2150, 2177, 2927, 3927
SmoI	CTYRAG	6 cut(s)	1442, 1790, 2150, 2177, 2927, 3927
SpeI	ACTAGT	1 cut(s)	2164
SphI	GCATGC	1 cut(s)	1641
SsiI	CCGC	3 cut(s)	1742, 2251, 3425
SspI	AATATT	2 cut(s)	2032, 2104
StyD4I	CCNGG	6 cut(s)	272, 432, 535, 1936, 2508, 3137
StyI	CCWWGG	2 cut(s)	1344, 1758
TaiI	ACGT	1 cut(s)	307
TatI	WGTACW	9 cut(s)	255, 514, 1583, 2386, 2736, 3195, 3730, 4241, 4389
TfiI	GAWTC	9 cut(s)	35, 44, 73, 1067, 2227, 2871, 3912, 4235, 4415
TseFI	GTSAC	6 cut(s)	605, 896, 1074, 2395, 2563, 2681
Tsp45I	GTSAC	6 cut(s)	605, 896, 1074, 2395, 2563, 2681
TspGWI	ACGGA	3 cut(s)	20, 1304, 1647
Tth111I	GACNNNGTC	1 cut(s)	2516
VneI	GTGCAC	2 cut(s)	2976, 3559
VpaK11BI	GGWCC	5 cut(s)	962, 1711, 2173, 2512, 3970
VspI	ATTAAT	1 cut(s)	93
XagI	CCTNNNNNAGG	1 cut(s)	3672
XbaI	TCTAGA	1 cut(s)	2594
XceI	RCATGY	3 cut(s)	1641, 1667, 3610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3660
XmiI	GTMKAC	2 cut(s)	2758, 3806
XmnI	GAANNNNTTC	1 cut(s)	2103
ZrmI	AGTACT	5 cut(s)	516, 1585, 2388, 3197, 4391
Zsp2I	ATGCAT	2 cut(s)	92, 1495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.