Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

65736066 .. 65742889

Gene Structure 6824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4419 bp

ATGATGGAGGATTTGTGGGTTCTGTATTGTGGGGAATCTGCTCCTTCCAATTTTGACTTTCTGGGCCATCCTTCTTCATGCACCAATCACTTGTTGATAATTTGCTTGGACATAGTTCTGTTAGTATTGCTCTTGTTCACTATGTTTCATAAGTCATCATCATCCAAATCAGCTCACATTCCAGCCCGGTTTCGAGGCTTTTCCAGTTTGCAAATAGTGTCTGCCATTGTCAATGGCTGTCTTGGATTTGTGTACTTGTGCTTGGGAACCTGGATTTTAGTACAGAAGCTGAGGGATTCAGGATCTGCTTTGCCTTTGAATTGGTGGTTACTTACTTTGTTTCAAGGGATAACATGGCTGTTGGTGAGTTTGAGTCTGAGCATCAGGGGAAAACTCCTTGCAAGGCAACCTTCGAGACTGTTGTCTATCCTTGCATTCCTGTTTTCTGGAATTGTCTGTGCTCTATCGCTCTTTGCAGCCATTTTTGGAAAAGAAATATCTGTGAAGATAGTTCTAGATATCCTATCTTTTCCAGGAGCAGCATTGTTGCTGTTCTGTGTTTATAAGGGTTATATACATGAAGAGGGTGATGAGAGCCTCAATGGAAATGGCCTTTATGCTCCTCTTTATGGTGAGTCCAATGTCACTAGTAAAGGTGAAGATCATGTTACTCCATTTGCCAAAGCTGGATTTTTTAGTAAAATGTCACTTTGGTGGCTGAATTCATTGATGAAAAAGGGTAGAGAGAAAACACTTGAGGACGAAGACATACCAAAGTTGCGTGAGGAAGATCAAGCAGAAAGCTGTTATCTGCTGTTCTTGGAGCAACTGAGCAAGCAGAAAGAAATTGATCCATCTTCCCAACCATCAGTGTTGAAGACGATAATCATATGCCACTGGAAGGAGATTTTACTATCTGGCTTCTTTGCTTTACTTAAGATAGTCACTCTCTCTGCAGGTCCTTTGCTTCTCAATGCCTTTATTTTGGTTGCTGAGGGAAATGAAAGTTTCAAATATGAAGGTTACGTGTTAGCCATAACACTTTTCTTTTCAAAGACCATTGAATCTTTCTCACAAAGGCAGTGGTACTTAAGATGCAGGCTTATTGGTTTGAAAATTAGGTCTTTGCTATCAGCAGCCATTTACAAGAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCTGGTGGTGAAATCATGAATTATGTTACCGTGGATGCTTATAGGATTGGAGAATTCCCATTTTGGTTCCATCAGACTTGGACAACTAGCCTCCAGCTTTGTTTTGCTTTGGTGATTCTTTTCCGTGCAGTCGGCCTAGCCACATTTGCATCATTGGTGGTGATAGTTTTGACTGTTGTTTGTAATGCTCCACTTGCTAAGTTACAACATAGGTTTCAAAGTAAGCTTATGGTGGCACAAGATGAAAGACTCAAGGCATGTTCAGAAGCTCTTATAAACATGAAGGTACTAAAACTGTATGCATGGGAAACCCATTTCAAGAATGCAATAGAGAAATTGAGGAAGGAGGAGCATAAATGGTTATCTGCTGTACAGCTAAGGAAAGCATATAACACCTATCTCTTTTGGTCATCTCCTGTTTTGGTCTCTGCTGCAACATTTGGGGCATGCTATTTTCTCGGAATTCCATTGCATGCAAACAACGTTTTCACTTTCGTTGCAACTTTGCGCCTTGTTCAGGACCCCATTCGATCTATACCTGAGGTTATTGGGGTTGTCATTCAAGCCAAGGTTGCATTTGAGCGTATTGTGAAATTCCTTGAGGCACCAGAGCTGCACTCTTCAAATGTCAGGAAGTGCAACATGAAGAATGTAGCACATTCCATTGTTATTAAGTCAGCTAGTTTTTCATGGGATAATTTATCAAAGGCCACACTGAGAAATATAAATTTAGAGGTTAGCCCTGGTCAGAAGGTGGCTATATGTGGAGAAGTTGGCTCAGGAAAATCAAGCCTCCTAGCTGCAATTCTCGGAGAAATTCCAAATGTTGAAGGAACTATTCAAGTTTTTGGGAGGATTGCATATGTTTCTCAAACAGCATGGATCCAGACAGGGACAATACAGGAGAATATTATATTTGGTTCTGCTATGGATAGTGAAAGATACCGAGAAACACTTGAGAGATGTTCACTTGTAAAGGACCTTGAGTTACTGCCCTATGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAATCTAAGTGGTGGTCAGAAGCAGCGGATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGACATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCTACTAACCTATTTAATGAATATGTTATGGAAGCACTTTCAGGGAAGACAGTCTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCAGTCTTGTTGATGTTGGATGGGGAAATCCTTGAAGCAGCTCCTTATTATCAGTTATTGGCCTCGAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCAGATGTCCCTTCTGTCCAAAATTCTGGAACATCATCCAGAGAGATTAAGAAGGCTTATGTAGAGAAGAAATTGAAAGGAAACAAAGGTGACCAGTTGATTAAGATAGAAGAGAGAGAAACAGGAGACACTGGTTTGAGGCCATACAAACAGTATCTGAGACAGAACAAAGGGGTCTTGTACTTCTCAGCCGCTGTTCTTTTACACCTGACATTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCTGTCGATTGGATTTTCTGCAACATTTATTTTGCTGTTCAGATCTCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTAAACTCTCTATTTCGTGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTGGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGCTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGCGCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACCAGTGCACTATAGCAAATTACATAATTTCGGTTGAAAGACTAAATCAATACACACATGTACCAAGCGAAGCCCCTGAAGTTATAGAGGGAAACCGTCCACCTCCCAACTGGCCTGTTGTAGGAAAAGTGGAAATACAAAATTTGCAGATAAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATCAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTAATCGGTGCTCTATTTCGTCTGGTAGAGCCAGCCGGAGGGAAGGTTATAGTCGATGGCATTGACATCTCTACTATAGGACTTCACGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTCAATGGGACTGTGAGATACAATTTGGATCCCTTATATCAACATAAAGACCATGAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGGGAGGCTGTTCAAGAAAAAGAAGGCGGCTTAGACTCTTTAGTTGTGGAAGATGGATCAAACTGGAGCATGGGGCAAAGGCAGTTGTTCTGTTTGGGCCGTGCTCTTTTGAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACAGCTTCCATCGACAATGCAACTGATATGATTTTACAGAAGACTATACGGACTGAATTTGCAGATTGTACAGTTATTACAGTAGCTCACAGGATACCGACTGTGATGGATTGCACAATGGTCCTTGCCATTAGTGACGGGAAAATAGTGGAGTATGATGAGCCAATGAACCTAATGAAAAGAGAAGGCTCACTATTCGGGCAGCTTGTCAAGGAATACTGGTCTCATCTTCAGTCTGCAGAATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1472

Amino Acids

163.78

Weight (kDa)

7.15

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 191	1.3e-76	ABCC10 N-terminal domain
ABC_membrane	PF00664	303 - 568	7.8e-24	ABC transporter transmembrane region
ABC_tran	PF00005	635 - 769	7.5e-23	ABC transporter
ABC_membrane	PF00664	910 - 1173	3.4e-26	ABC transporter transmembrane region
ABC_tran	PF00005	1243 - 1391	2e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	564, 1463
Acc16I	TGCGCA	1 cut(s)	3418
Acc36I	ACCTGC	1 cut(s)	947
AccB1I	GGYRCC	2 cut(s)	1792, 3278
AccI	GTMKAC	1 cut(s)	3800
AciI	CCGC	3 cut(s)	2245, 2742, 4050
AclI	AACGTT	1 cut(s)	1671
AcoI	YGGCCR	1 cut(s)	3778
AcuI	CTGAAG	2 cut(s)	3645, 4382
AcyI	GRCGYC	1 cut(s)	3279
AfaI	GTAC	9 cut(s)	254, 282, 1088, 1476, 1560, 2732, 3117, 3609, 4237
AfeI	AGCGCT	1 cut(s)	3314
AfiI	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3668, 3842
AflII	CTTAAG	2 cut(s)	935, 1090
AflIII	ACRYGT	3 cut(s)	1026, 3522, 3604
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	4 cut(s)	269, 532, 1930, 3066
AleI	CACNNNNGTG	2 cut(s)	712, 1191
Alw21I	GWGCWC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
Alw26I	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
Alw44I	GTGCAC	2 cut(s)	2970, 3553
AlwNI	CAGNNNCTG	5 cut(s)	289, 305, 2707, 2744, 3269
Ama87I	CYCGRG	1 cut(s)	2488
Aor51HI	AGCGCT	1 cut(s)	3314
AoxI	GGCC	9 cut(s)	64, 610, 1321, 1896, 2484, 2690, 3659, 3778, 4120
ApaLI	GTGCAC	2 cut(s)	2970, 3553
AspLEI	GCGC	5 cut(s)	1698, 3281, 3315, 3419, 3499
AspS9I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
AsuC2I	CCSGG	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	3353
AvaI	CYCGRG	1 cut(s)	2488
AvaII	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
AxyI	CCTNAGG	1 cut(s)	1728
BaeGI	GKGCMC	2 cut(s)	2974, 3557
BaeI	ACNNNNGTAYC	2 cut(s)	3591, 3624
BamHI	GGATCC	2 cut(s)	2070, 3964
BanI	GGYRCC	2 cut(s)	1792, 3278
BauI	CACGAG	1 cut(s)	2259
BbsI	GAAGAC	4 cut(s)	771, 884, 2381, 4214
Bbv12I	GWGCWC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
BbvCI	CCTCAGC	2 cut(s)	290, 993
BceAI	ACGGC	1 cut(s)	4107
BciT130I	CCWGG	4 cut(s)	271, 534, 1932, 3068
BciVI	GTATCC	2 cut(s)	3003, 4254
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3119, 3260, 3354
BfmI	CTRYAG	6 cut(s)	954, 3182, 3435, 3558, 3879, 4404
BfoI	RGCGCY	3 cut(s)	3282, 3316, 3500
BfrI	CTTAAG	2 cut(s)	935, 1090
BfuAI	ACCTGC	1 cut(s)	947
BfuI	GTATCC	2 cut(s)	3003, 4254
BglI	GCCNNNNNGGC	1 cut(s)	3786
BglII	AGATCT	2 cut(s)	2894, 3046
BmcAI	AGTACT	1 cut(s)	3117
Bme1390I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
Bme18I	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
BmeT110I	CYCGRG	1 cut(s)	2488
BmgT120I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
BmiI	GGNNCC	7 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3966
BmrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
BmsI	GCATC	6 cut(s)	390, 1085, 1213, 1346, 2308, 2936
BmtI	GCTAGC	1 cut(s)	3357
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	4 cut(s)	771, 884, 2381, 4214
BplI	GAGNNNNNCTC	2 cut(s)	1790, 1822
BpmI	CTGGAG	2 cut(s)	1265, 4108
Bpu10I	CCTNAGC	4 cut(s)	290, 993, 1565, 1966
BpuEI	CTTGAG	7 cut(s)	776, 1424, 1808, 2165, 2192, 2942, 3906
BpuMI	CCSGG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	3221
BsaHI	GRCGYC	1 cut(s)	3279
BsaI	GGTCTC	2 cut(s)	1618, 4395
BsaJI	CCNNGG	3 cut(s)	1218, 1755, 1930
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 3834, 3864
Bsc4I	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3668, 3842
Bse1I	ACTGG	9 cut(s)	204, 902, 2644, 2686, 3469, 3550, 3662, 4091, 4391
Bse21I	CCTNAGG	1 cut(s)	1728
Bse3DI	GCAATG	2 cut(s)	1655, 2831
Bse8I	GATNNNNATC	1 cut(s)	3221
BseBI	CCWGG	4 cut(s)	271, 534, 1932, 3068
BseDI	CCNNGG	3 cut(s)	1218, 1755, 1930
BseGI	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715
BseJI	GATNNNNATC	1 cut(s)	3221
BseLI	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3668, 3842
BseMI	GCAATG	2 cut(s)	1655, 2831
BseNI	ACTGG	9 cut(s)	204, 902, 2644, 2686, 3469, 3550, 3662, 4091, 4391
BseRI	GAGGAG	3 cut(s)	612, 1550, 4150
BseSI	GKGCMC	2 cut(s)	2974, 3557
BsgI	GTGCAG	2 cut(s)	1335, 1787
BshFI	GGCC	9 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780, 4122
BshNI	GGYRCC	2 cut(s)	1792, 3278
BsiHKAI	GWGCWC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
BsiHKCI	CYCGRG	1 cut(s)	2488
BsiSI	CCGG	3 cut(s)	187, 3781, 3840
BslFI	GGGAC	3 cut(s)	2095, 2543, 3958
BslI	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3668, 3842
BsmAI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BsmFI	GGGAC	3 cut(s)	2095, 2543, 3958
BsmI	GAATGC	3 cut(s)	434, 1516, 2281
BsnI	GGCC	9 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780, 4122
Bso31I	GGTCTC	2 cut(s)	1618, 4395
BsoBI	CYCGRG	1 cut(s)	2488
Bsp1286I	GDGCHC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
Bsp1407I	TGTACA	2 cut(s)	1558, 4235
BspACI	CCGC	3 cut(s)	2245, 2742, 4050
BspANI	GGCC	9 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780, 4122
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	7 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3966
BspMAI	CTGCAG	3 cut(s)	958, 3439, 4408
BspMI	ACCTGC	1 cut(s)	947
BspOI	GCTAGC	1 cut(s)	3357
BspQI	GCTCTTC	1 cut(s)	3303
BspT107I	GGYRCC	2 cut(s)	1792, 3278
BspTI	CTTAAG	2 cut(s)	935, 1090
BspTNI	GGTCTC	2 cut(s)	1618, 4395
BsrDI	GCAATG	2 cut(s)	1655, 2831
BsrGI	TGTACA	2 cut(s)	1558, 4235
BsrI	ACTGG	9 cut(s)	204, 902, 2644, 2686, 3469, 3550, 3662, 4091, 4391
BssECI	CCNNGG	3 cut(s)	1218, 1755, 1930
BssNI	GRCGYC	1 cut(s)	3279
BssSI	CACGAG	1 cut(s)	2259
BssT1I	CCWWGG	1 cut(s)	1755
Bst2BI	CACGAG	1 cut(s)	2259
Bst2UI	CCWGG	4 cut(s)	271, 534, 1932, 3068
Bst6I	CTCTTC	5 cut(s)	576, 1813, 2655, 3303, 3941
BstACI	GRCGYC	1 cut(s)	3279
BstAFI	CTTAAG	2 cut(s)	935, 1090
BstAPI	GCANNNNNTGC	1 cut(s)	2327
BstAUI	TGTACA	2 cut(s)	1558, 4235
BstBAI	YACGTR	1 cut(s)	1027
BstC8I	GCNNGC	8 cut(s)	836, 1100, 1636, 1662, 2415, 2550, 3355, 3837
BstDSI	CCRYGG	1 cut(s)	1218
BstEII	GGTNACC	1 cut(s)	2639
BstENI	CCTNNNNNAGG	2 cut(s)	1703, 3666
BstF5I	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715
BstH2I	RGCGCY	3 cut(s)	3282, 3316, 3500
BstHHI	GCGC	5 cut(s)	1698, 3281, 3315, 3419, 3499
BstMAI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BstMWI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3083, 3428, 3437, 3786
BstNI	CCWGG	4 cut(s)	271, 534, 1932, 3068
BstNSI	RCATGY	5 cut(s)	1449, 1638, 1664, 3526, 3608
BstPAI	GACNNNNGTC	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	2639
BstSCI	CCNGG	5 cut(s)	185, 269, 532, 1930, 3066
BstSFI	CTRYAG	6 cut(s)	954, 3182, 3435, 3558, 3879, 4404
BstSLI	GKGCMC	2 cut(s)	2974, 3557
BstV2I	GAAGAC	4 cut(s)	771, 884, 2381, 4214
BstX2I	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
BstXI	CCANNNNNNTGG	2 cut(s)	2576, 3160
BstYI	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
Bsu36I	CCTNAGG	1 cut(s)	1728
BsuI	GTATCC	2 cut(s)	3003, 4254
BsuRI	GGCC	9 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780, 4122
BtgI	CCRYGG	1 cut(s)	1218
BtsCI	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715
BtsI	GCAGTG	3 cut(s)	1088, 3201, 3796
BtsIMutI	CAGTG	9 cut(s)	876, 895, 1088, 1901, 2196, 2679, 3201, 3557, 3796
BveI	ACCTGC	1 cut(s)	947
Cac8I	GCNNGC	8 cut(s)	836, 1100, 1636, 1662, 2415, 2550, 3355, 3837
CaiI	CAGNNNCTG	5 cut(s)	289, 305, 2707, 2744, 3269
CciI	TCATGA	1 cut(s)	1203
CfoI	GCGC	5 cut(s)	1698, 3281, 3315, 3419, 3499
Cfr13I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
Csp6I	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2731, 3116, 3608, 4236
CspCI	CAANNNNNGTGG	4 cut(s)	1064, 1099, 2209, 2244
CviQI	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2731, 3116, 3608, 4236
DinI	GGCGCC	1 cut(s)	3280
EaeI	YGGCCR	1 cut(s)	3778
Eam1104I	CTCTTC	5 cut(s)	576, 1813, 2655, 3303, 3941
EarI	CTCTTC	5 cut(s)	576, 1813, 2655, 3303, 3941
Eco130I	CCWWGG	1 cut(s)	1755
Eco31I	GGTCTC	2 cut(s)	1618, 4395
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
Eco47III	AGCGCT	1 cut(s)	3314
Eco57I	CTGAAG	2 cut(s)	3645, 4382
Eco81I	CCTNAGG	1 cut(s)	1728
Eco88I	CYCGRG	1 cut(s)	2488
Eco91I	GGTNACC	1 cut(s)	2639
EcoNI	CCTNNNNNAGG	2 cut(s)	1703, 3666
EcoO109I	RGGNCCY	4 cut(s)	959, 1708, 2167, 2506
EcoO65I	GGTNACC	1 cut(s)	2639
EcoRI	GAATTC	3 cut(s)	721, 1241, 1650
EcoRII	CCWGG	4 cut(s)	269, 532, 1930, 3066
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	1755
EcoT22I	ATGCAT	1 cut(s)	1492
EgeI	GGCGCC	1 cut(s)	3280
EheI	GGCGCC	1 cut(s)	3280
ErhI	CCWWGG	1 cut(s)	1755
FalI	AAGNNNNNCTT	4 cut(s)	394, 426, 2366, 2398
FaqI	GGGAC	3 cut(s)	2095, 2543, 3958
FauNDI	CATATG	2 cut(s)	890, 2050
FblI	GTMKAC	1 cut(s)	3800
FokI	GGATG	8 cut(s)	54, 148, 1235, 2309, 2456, 2572, 2809, 3722
FspBI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3119, 3260, 3354
FspI	TGCGCA	1 cut(s)	3418
GlaI	GCGC	5 cut(s)	1697, 3280, 3314, 3418, 3498
GsuI	CTGGAG	2 cut(s)	1265, 4108
HaeII	RGCGCY	3 cut(s)	3282, 3316, 3500
HaeIII	GGCC	9 cut(s)	66, 612, 1323, 1898, 2486, 2692, 3661, 3780, 4122
HapII	CCGG	3 cut(s)	187, 3781, 3840
HhaI	GCGC	5 cut(s)	1698, 3281, 3315, 3419, 3499
Hin1I	GRCGYC	1 cut(s)	3279
Hin6I	GCGC	5 cut(s)	1696, 3279, 3313, 3417, 3497
HinP1I	GCGC	5 cut(s)	1696, 3279, 3313, 3417, 3497
HincII	GTYRAC	2 cut(s)	1182, 2904
HindII	GTYRAC	2 cut(s)	1182, 2904
HindIII	AAGCTT	1 cut(s)	1412
HpaI	GTTAAC	1 cut(s)	2904
HpaII	CCGG	3 cut(s)	187, 3781, 3840
HpyCH4IV	ACGT	2 cut(s)	1026, 1671
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3083, 3428, 3437, 3786
HpySE526I	ACGT	2 cut(s)	1026, 1671
Hsp92I	GRCGYC	1 cut(s)	3279
HspAI	GCGC	5 cut(s)	1696, 3279, 3313, 3417, 3497
KasI	GGCGCC	1 cut(s)	3278
KspAI	GTTAAC	1 cut(s)	2904
LguI	GCTCTTC	1 cut(s)	3303
LmnI	GCTCC	9 cut(s)	46, 536, 625, 823, 1381, 1537, 2470, 3083, 4089
LweI	GCATC	6 cut(s)	390, 1085, 1213, 1346, 2308, 2936
MaeI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3119, 3260, 3354
MaeII	ACGT	2 cut(s)	1026, 1671
MfeI	CAATTG	2 cut(s)	1154, 2837
MflI	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
MhlI	GDGCHC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
Mly113I	GGCGCC	1 cut(s)	3279
MlyI	GAGTC	6 cut(s)	382, 644, 1431, 2984, 3275, 4052
MmeI	TCCRAC	2 cut(s)	2421, 3485
Mph1103I	ATGCAT	1 cut(s)	1492
MseI	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518
MslI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
MspA1I	CMGCKG	2 cut(s)	2245, 2744
MspCI	CTTAAG	2 cut(s)	935, 1090
MspI	CCGG	3 cut(s)	187, 3781, 3840
MspR9I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
MunI	CAATTG	2 cut(s)	1154, 2837
Mva1269I	GAATGC	3 cut(s)	434, 1516, 2281
MvaI	CCWGG	4 cut(s)	271, 534, 1932, 3068
MwoI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3083, 3428, 3437, 3786
NarI	GGCGCC	1 cut(s)	3279
NciI	CCSGG	1 cut(s)	187
NdeI	CATATG	2 cut(s)	890, 2050
NheI	GCTAGC	1 cut(s)	3353
NlaIV	GGNNCC	7 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3966
NmuCI	GTSAC	6 cut(s)	643, 705, 943, 2389, 2639, 4301
NsbI	TGCGCA	1 cut(s)	3418
NsiI	ATGCAT	1 cut(s)	1492
NspI	RCATGY	5 cut(s)	1449, 1638, 1664, 3526, 3608
OliI	CACNNNNGTG	2 cut(s)	712, 1191
PaeI	GCATGC	2 cut(s)	1638, 1664
PaeR7I	CTCGAG	1 cut(s)	2488
PagI	TCATGA	1 cut(s)	1203
PciI	ACATGT	2 cut(s)	3522, 3604
PciSI	GCTCTTC	1 cut(s)	3303
PctI	GAATGC	3 cut(s)	434, 1516, 2281
PfeI	GAWTC	8 cut(s)	35, 296, 1064, 1303, 2248, 2423, 3394, 4409
PflFI	GACNNNGTC	1 cut(s)	2510
PfoI	TCCNGGA	1 cut(s)	532
PleI	GAGTC	6 cut(s)	381, 643, 1431, 2984, 3274, 4052
PluTI	GGCGCC	1 cut(s)	3282
PpsI	GAGTC	6 cut(s)	381, 643, 1431, 2984, 3274, 4052
Ppu21I	YACGTR	1 cut(s)	1027
PpuMI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PscI	ACATGT	2 cut(s)	3522, 3604
PshAI	GACNNNNGTC	1 cut(s)	421
PsiI	TTATAA	2 cut(s)	564, 1463
Psp1406I	AACGTT	1 cut(s)	1671
Psp5II	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
Psp6I	CCWGG	4 cut(s)	269, 532, 1930, 3066
PspEI	GGTNACC	1 cut(s)	2639
PspGI	CCWGG	4 cut(s)	269, 532, 1930, 3066
PspN4I	GGNNCC	7 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3966
PspPI	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
PspPPI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PspXI	VCTCGAGB	1 cut(s)	2488
PstI	CTGCAG	3 cut(s)	958, 3439, 4408
PstNI	CAGNNNCTG	5 cut(s)	289, 305, 2707, 2744, 3269
PsuI	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
PsyI	GACNNNGTC	1 cut(s)	2510
RsaI	GTAC	9 cut(s)	254, 282, 1088, 1476, 1560, 2732, 3117, 3609, 4237
RsaNI	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2731, 3116, 3608, 4236
RseI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
SapI	GCTCTTC	1 cut(s)	3303
SaqAI	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518
Sau96I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
ScaI	AGTACT	1 cut(s)	3117
SchI	GAGTC	6 cut(s)	382, 644, 1431, 2984, 3275, 4052
ScrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
SduI	GDGCHC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
SfaNI	GCATC	6 cut(s)	390, 1085, 1213, 1346, 2308, 2936
SfcI	CTRYAG	6 cut(s)	954, 3182, 3435, 3558, 3879, 4404
SfoI	GGCGCC	1 cut(s)	3280
Sfr274I	CTCGAG	1 cut(s)	2488
SinI	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
SlaI	CTCGAG	1 cut(s)	2488
SmiMI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
SpeI	ACTAGT	1 cut(s)	647
SphI	GCATGC	2 cut(s)	1638, 1664
SsiI	CCGC	3 cut(s)	2245, 2742, 4050
SspDI	GGCGCC	1 cut(s)	3278
SspI	AATATT	2 cut(s)	2098, 3191
SspMI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3119, 3260, 3354
StyD4I	CCNGG	5 cut(s)	185, 269, 532, 1930, 3066
StyI	CCWWGG	1 cut(s)	1755
TaiI	ACGT	2 cut(s)	1029, 1674
TaqI	TCGA	8 cut(s)	193, 413, 1717, 2489, 2858, 3730, 3858, 4179
TatI	WGTACW	6 cut(s)	252, 280, 1558, 2730, 3115, 4235
TauI	GCSGC	2 cut(s)	2744, 4053
TfiI	GAWTC	8 cut(s)	35, 296, 1064, 1303, 2248, 2423, 3394, 4409
Tru1I	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518
Tru9I	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2598, 2652, 2903, 3518
TscAI	CASTG	9 cut(s)	876, 902, 1088, 1908, 2203, 2686, 3208, 3557, 3796
TseFI	GTSAC	6 cut(s)	643, 705, 943, 2389, 2639, 4301
Tsp45I	GTSAC	6 cut(s)	643, 705, 943, 2389, 2639, 4301
TspGWI	ACGGA	2 cut(s)	1301, 4231
TspRI	CASTG	9 cut(s)	876, 902, 1088, 1908, 2203, 2686, 3208, 3557, 3796
Tth111I	GACNNNGTC	1 cut(s)	2510
Vha464I	CTTAAG	2 cut(s)	935, 1090
VneI	GTGCAC	2 cut(s)	2970, 3553
VpaK11BI	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
XagI	CCTNNNNNAGG	2 cut(s)	1703, 3666
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	5 cut(s)	1449, 1638, 1664, 3526, 3608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3654
XhoI	CTCGAG	1 cut(s)	2488
XmiI	GTMKAC	1 cut(s)	3800
XspI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3119, 3260, 3354
ZrmI	AGTACT	1 cut(s)	3117
Zsp2I	ATGCAT	1 cut(s)	1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.