Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

65833201 .. 65840058

Gene Structure 6858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4413 bp

ATGATGGAGGATTTGTGGGTTCTGTATTGTGGGGAATCTGGTCCTTCCAATTTTGACTTTCTGGGCCATCCTTCTTCATGCACCAATCACTTGTTGATAATTTGCTTGGACATAGTTCTGTTAGTATTGCTCTTGTTCACTATGTTTCATAAGTCATCATCATCCAAATCAGCTCACATTCCAGCCCGGTTTCGAGGCTTTTCCAGTTTGCAAATAGTGTCTGCCATTGTCAATGGCTGTCTTGGATTTGTGTACTTGTGCTTGGGAACCTGGATTTTAGTACAGAAGCTGAGGGATTCAGGATCTGCTTTGCCTTTGAATTGGTGGTTACTTACTTTGTTTCAAGGGATAACATGGCTATTGGTGAGTTTGAGTCTGAGCATCAGGGGAAAACTCCTTGCAAGGCAACCTTCGAGACTGTTGTCTATCCTTGCATTCCTGTTTTCTGGAATTGTCTGTGCTCTATCGCTCTTTGCAGCGATTTTTGGAAAAGAAATATCTGTGAAGATAGTTCTAGATATCCTATCTTTTCCAGGAGCAGCATTGTTGCTGTTCTGTGTTTATAAGGGTTATATACATGAAGAGGGTGATGAGAGCCTCAATGGAAATGGCCTTTATGCTCCTCTTTATGGTGAGTCCAATGTCACTAGTAAAGGTGAAGATCATGTTACTCCATTTGCCAAAGCTGGATTTTTTAGTAAAATGTCACTTTGGTGGCTGAATTCATTGATGAAAAAGGGTAGAGAGAAAACACTTGAGGACGAAGACATACCAAAGTTGCGTGAGGAAGATCAAGCAGAAAGCTGTTATCTGCTGTTCTTGGAGCAACTGAGCAAGCAGAAAGAAATTGATCCATCTTCCCAACCATCAGTGTTGAAGACGATAATCATATGCCACTGGAAGGAGATTTTACTATCTGGCTTCTTTGCTTTACTTAAGATAGTCACTCTCTCTGCAGGTCCTTTGCTTCTCAATGCCTTTATTTTGGTTGCTGAGGGAAATGAAAGTTTCAAATATGAAGGTTACGTGTTAGCCATAACACTTTTCTTTTCAAAGACCATTGAATCTTTCTCACAAAGGCAATGGTACTTAAGATGCAGGCTTATTGGTTTGAAAATTAGGTCTTTGCTATCAGCAGCCATTTACAAGAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCTGGTGGTGAAATCATGAATTATGTTACCGTGGATGCTTATAGGATTGGAGAATTCCCATTTTGGTTCCATCAGACTTGGACAACTAGCCTCCAGCTTTGTTTTGCTTTGGTGATTCTTTTCCGTGCAGTCGGCCTAGCCACATTTGCATCATTGGTGGTGATAGTTTTGACTGTTGTTTGTAATGCTCCACTTGCTAAGTTACAACATAGGTTTCAAAGTAAGCTTATGGTGGCACAAGATGAAAGACTCAAGGCATGTTCAGAATCTCTTATAAACATGAAGGTACTAAAACTGTATGCATGGGAAACCCATTTCAAGAATGCAATAGAGAAATTGAGGAAGGAGGAGCATAAATGGTTATCTGCTGTACAGCTAAGGAAAGCATATAACACCTATCTCTTTTGGTCATCTCCTGTTTTGGTCTCTGCTGCAACATTTGGGGCATGCTATTTTCTCGGAATTCCATTGCATGCAAACAATGTTTTCACTTTCGTTGCAACTTTGCGCCTTGTTCAGGACCCCATTCGATCTATACCTGAGGTTATTGGGGTTGTCATTCAAGCCAAGGTTGCATTTGAGCGTATTGTGAAATTCCTTGAGGCACCAGAGATGCACTCTTCAAATGTCAGGAAGTGCAACATGAAGAATGTAGCACATTCCATTGTTATTAAGTCAGCTAGTTTTTCATGGGATAATTTATCAAAGGCCACACTGAGAAATATAAATTTAGAGGTTAGCCCTGGTCAGAAGGTGGCTATATGTGGAGAAGTTGGCTCAGGAAAATCAAGCCTCCTAGCTGCAATTCTCGGAGAAATTCCAAATGTTGAAGGAACTATTCAAGTTTTTGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGACAGGGACAATACAAGAGAATATTCTATTTGGTTCTGCTATGGATAGTGAAAGATACCGAGAAACACTTGAGAGATGTTCACTTGTAAAGGACCTTGAGTTACTGCCCTATGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAATCTAAGTGGTGGTCAGAAGCAGCGGATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGACATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCTACTAACCTATTTAATGAATATGTTATGGAAGCACTTTCAGGGAAGACAGTCTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCAGTCTTGTTGATGTTGGATGGGGAAATCCTTGAAGCAGCTCCTTATTATCAGTTATTGGCCTCGAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCAGATGTCCCTTCTGTCCAAAATTCTGGATCATCCAGAGAGATTAAGAAGGCTTATGTAGAGAAATTGAAAGGAAATAAAGGTGACCAGTTGATTAAGATAGAAGAGAGAGAAACTGGAGACACTGGTTTGAGACCATACAAACAGTATCTGAGACAGAACAAAGGGGTCTTGTACTTCTCAGCCGCTGTTCTTTTACACCTGACATTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATAGTGGTTTACCTGTCGATTGGATTTTCTGCAACATTTATTTTGCTGTTCAGATCTCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTAAACTCTCTATTTCGTGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTGGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGCGCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTTTTCAATTCAAAACCAGTGCACTATAGCAAATTACATAATTTCGGTTGAAAGACTAAATCAATACACACATGTACCAAGCGAAGCCCCTGAAGTTATAGAGAGAAACCGTCCACCTCCCAACTGGCCTGTTGTAGGAAAAGTGGAAATACAAAATTTGCAGATAAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATCAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTAATCGGTGCTTTATTTCGTCTGGTGGAGCCAGCCGGAGGGAAGATTATAGTCGATGGCATTGACATCTCTATTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCAACTCTCTTCAATGGGACTGTGAGATACAATTTGGATCCCTTATATCGACATTCAGACCATGAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGGGAGGCTGTTCAAGAAAAAGAAGGCGGCTTAGACTCTTTAGTTGTGGAAGATGGATCAAACTGGAGCATGGGGCAAAGGCAGTTGTTCTGTTTGGGCCGTGCTCTTTTGAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACAGCTTCCATCGACAATGCAACTGATATGATTTTACAGAAGACTATACGGACTGAATTTGCAGATTGTACAGTTATTACAGTAGCTCACAGGATACCGACTGTGATGGATTGCACAATGGTCCTTGCCATTAGTGACGGGAAAATAGTGGAGTATGATGAGCCAATGAACCTAATGAAAAGAGAAGGCTCACTATTCGGGCAGCTTGTCAAGGAATACTGGTCTCATCTCCAGTCTGCAGAATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1470

Amino Acids

163.64

Weight (kDa)

7.15

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 191	1.1e-76	ABCC10 N-terminal domain
ABC_membrane	PF00664	303 - 568	5.5e-24	ABC transporter transmembrane region
ABC_tran	PF00005	635 - 769	7e-23	ABC transporter
ABC_membrane	PF00664	908 - 1171	3.4e-26	ABC transporter transmembrane region
ABC_tran	PF00005	1241 - 1389	3.5e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	564, 1463
Acc16I	TGCGCA	1 cut(s)	3412
Acc36I	ACCTGC	1 cut(s)	947
AccB1I	GGYRCC	2 cut(s)	1792, 3272
AccI	GTMKAC	1 cut(s)	3794
AciI	CCGC	3 cut(s)	2245, 2736, 4044
AcoI	YGGCCR	1 cut(s)	3772
AcuI	CTGAAG	1 cut(s)	3639
AcyI	GRCGYC	1 cut(s)	3273
AfaI	GTAC	9 cut(s)	254, 282, 1088, 1476, 1560, 2726, 3111, 3603, 4231
AfeI	AGCGCT	1 cut(s)	3308
AfiI	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3662, 3836
AflII	CTTAAG	2 cut(s)	935, 1090
AflIII	ACRYGT	3 cut(s)	1026, 3516, 3598
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	4 cut(s)	269, 532, 1930, 3060
AleI	CACNNNNGTG	2 cut(s)	712, 1191
Alw21I	GWGCWC	5 cut(s)	463, 2266, 2968, 3551, 4123
Alw26I	GTCTC	6 cut(s)	409, 1618, 2664, 2677, 2698, 4389
Alw44I	GTGCAC	2 cut(s)	2964, 3547
AlwNI	CAGNNNCTG	5 cut(s)	289, 305, 2701, 2738, 3263
Ama87I	CYCGRG	1 cut(s)	2488
Aor51HI	AGCGCT	1 cut(s)	3308
AoxI	GGCC	8 cut(s)	64, 610, 1321, 1896, 2484, 3653, 3772, 4114
ApaLI	GTGCAC	2 cut(s)	2964, 3547
AspLEI	GCGC	5 cut(s)	1698, 3275, 3309, 3413, 3493
AspS9I	GGNCC	8 cut(s)	41, 64, 959, 1708, 2167, 2506, 4114, 4282
AsuC2I	CCSGG	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	3347
AvaI	CYCGRG	1 cut(s)	2488
AvaII	GGWCC	6 cut(s)	41, 959, 1708, 2167, 2506, 4282
AxyI	CCTNAGG	1 cut(s)	1728
BaeGI	GKGCMC	2 cut(s)	2968, 3551
BaeI	ACNNNNGTAYC	2 cut(s)	3585, 3618
BamHI	GGATCC	2 cut(s)	2070, 3958
BanI	GGYRCC	2 cut(s)	1792, 3272
BauI	CACGAG	1 cut(s)	2259
BbsI	GAAGAC	4 cut(s)	771, 884, 2381, 4208
Bbv12I	GWGCWC	5 cut(s)	463, 2266, 2968, 3551, 4123
BbvCI	CCTCAGC	2 cut(s)	290, 993
BceAI	ACGGC	1 cut(s)	4101
BciT130I	CCWGG	4 cut(s)	271, 534, 1932, 3062
BciVI	GTATCC	2 cut(s)	2997, 4248
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	6 cut(s)	409, 1618, 2664, 2677, 2698, 4389
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3113, 3254, 3348
BfmI	CTRYAG	5 cut(s)	954, 3176, 3429, 3552, 4398
BfoI	RGCGCY	3 cut(s)	3276, 3310, 3494
BfrI	CTTAAG	2 cut(s)	935, 1090
BfuAI	ACCTGC	1 cut(s)	947
BfuI	GTATCC	2 cut(s)	2997, 4248
BglI	GCCNNNNNGGC	1 cut(s)	3780
BglII	AGATCT	2 cut(s)	2888, 3040
BmcAI	AGTACT	1 cut(s)	3111
Bme1390I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3062
Bme18I	GGWCC	6 cut(s)	41, 959, 1708, 2167, 2506, 4282
BmeT110I	CYCGRG	1 cut(s)	2488
BmgT120I	GGNCC	8 cut(s)	41, 64, 959, 1708, 2167, 2506, 4114, 4282
BmiI	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3274, 3828, 3960
BmrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3062
BmsI	GCATC	7 cut(s)	390, 1085, 1213, 1346, 1791, 2308, 2930
BmtI	GCTAGC	1 cut(s)	3351
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	4 cut(s)	771, 884, 2381, 4208
BplI	GAGNNNNNCTC	2 cut(s)	1790, 1822
BpmI	CTGGAG	4 cut(s)	1265, 2688, 4102, 4376
Bpu10I	CCTNAGC	4 cut(s)	290, 993, 1565, 1966
BpuEI	CTTGAG	7 cut(s)	776, 1424, 1808, 2165, 2192, 2936, 3900
BpuMI	CCSGG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	3215
BsaHI	GRCGYC	1 cut(s)	3273
BsaI	GGTCTC	3 cut(s)	1618, 2677, 4389
BsaJI	CCNNGG	3 cut(s)	1218, 1755, 1930
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3662, 3836
Bse21I	CCTNAGG	1 cut(s)	1728
Bse3DI	GCAATG	3 cut(s)	1088, 1655, 2825
Bse8I	GATNNNNATC	1 cut(s)	3215
BseBI	CCWGG	4 cut(s)	271, 534, 1932, 3062
BseDI	CCNNGG	3 cut(s)	1218, 1755, 1930
BseGI	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2582, 2796, 3709
BseJI	GATNNNNATC	1 cut(s)	3215
BseLI	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3662, 3836
BseMI	GCAATG	3 cut(s)	1088, 1655, 2825
BseRI	GAGGAG	3 cut(s)	612, 1550, 4144
BseSI	GKGCMC	2 cut(s)	2968, 3551
BsgI	GTGCAG	1 cut(s)	1335
BshFI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 3655, 3774, 4116
BshNI	GGYRCC	2 cut(s)	1792, 3272
BsiHKAI	GWGCWC	5 cut(s)	463, 2266, 2968, 3551, 4123
BsiHKCI	CYCGRG	1 cut(s)	2488
BsiSI	CCGG	3 cut(s)	187, 3775, 3834
BslFI	GGGAC	3 cut(s)	2095, 2543, 3952
BslI	CCNNNNNNNGG	5 cut(s)	629, 901, 1705, 3662, 3836
BsmAI	GTCTC	6 cut(s)	409, 1618, 2664, 2677, 2698, 4389
BsmFI	GGGAC	3 cut(s)	2095, 2543, 3952
BsmI	GAATGC	3 cut(s)	434, 1516, 2281
BsnI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 3655, 3774, 4116
Bso31I	GGTCTC	3 cut(s)	1618, 2677, 4389
BsoBI	CYCGRG	1 cut(s)	2488
Bsp1286I	GDGCHC	5 cut(s)	463, 2266, 2968, 3551, 4123
Bsp1407I	TGTACA	2 cut(s)	1558, 4229
BspACI	CCGC	3 cut(s)	2245, 2736, 4044
BspANI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 3655, 3774, 4116
BspHI	TCATGA	2 cut(s)	1203, 3883
BspLI	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3274, 3828, 3960
BspMAI	CTGCAG	3 cut(s)	958, 3433, 4402
BspMI	ACCTGC	1 cut(s)	947
BspOI	GCTAGC	1 cut(s)	3351
BspQI	GCTCTTC	1 cut(s)	3297
BspT107I	GGYRCC	2 cut(s)	1792, 3272
BspTI	CTTAAG	2 cut(s)	935, 1090
BspTNI	GGTCTC	3 cut(s)	1618, 2677, 4389
BsrDI	GCAATG	3 cut(s)	1088, 1655, 2825
BsrGI	TGTACA	2 cut(s)	1558, 4229
BssECI	CCNNGG	3 cut(s)	1218, 1755, 1930
BssNI	GRCGYC	1 cut(s)	3273
BssSI	CACGAG	1 cut(s)	2259
BssT1I	CCWWGG	1 cut(s)	1755
Bst2BI	CACGAG	1 cut(s)	2259
Bst2UI	CCWGG	4 cut(s)	271, 534, 1932, 3062
Bst6I	CTCTTC	5 cut(s)	576, 1813, 2649, 3297, 3935
BstACI	GRCGYC	1 cut(s)	3273
BstAFI	CTTAAG	2 cut(s)	935, 1090
BstAPI	GCANNNNNTGC	1 cut(s)	2327
BstAUI	TGTACA	2 cut(s)	1558, 4229
BstBAI	YACGTR	1 cut(s)	1027
BstC8I	GCNNGC	8 cut(s)	836, 1100, 1636, 1662, 2415, 2550, 3349, 3831
BstDSI	CCRYGG	1 cut(s)	1218
BstEII	GGTNACC	1 cut(s)	2633
BstENI	CCTNNNNNAGG	2 cut(s)	1703, 3660
BstF5I	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2582, 2796, 3709
BstH2I	RGCGCY	3 cut(s)	3276, 3310, 3494
BstHHI	GCGC	5 cut(s)	1698, 3275, 3309, 3413, 3493
BstMAI	GTCTC	6 cut(s)	409, 1618, 2664, 2677, 2698, 4389
BstMWI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3077, 3422, 3431, 3780
BstNI	CCWGG	4 cut(s)	271, 534, 1932, 3062
BstNSI	RCATGY	5 cut(s)	1449, 1638, 1664, 3520, 3602
BstPAI	GACNNNNGTC	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	2633
BstSCI	CCNGG	5 cut(s)	185, 269, 532, 1930, 3060
BstSFI	CTRYAG	5 cut(s)	954, 3176, 3429, 3552, 4398
BstSLI	GKGCMC	2 cut(s)	2968, 3551
BstV2I	GAAGAC	4 cut(s)	771, 884, 2381, 4208
BstX2I	RGATCY	5 cut(s)	302, 2070, 2888, 3040, 3958
BstXI	CCANNNNNNTGG	2 cut(s)	2576, 3154
BstYI	RGATCY	5 cut(s)	302, 2070, 2888, 3040, 3958
Bsu36I	CCTNAGG	1 cut(s)	1728
BsuI	GTATCC	2 cut(s)	2997, 4248
BsuRI	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 3655, 3774, 4116
BtgI	CCRYGG	1 cut(s)	1218
BtsCI	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2582, 2796, 3709
BtsI	GCAGTG	2 cut(s)	3195, 3790
BtsIMutI	CAGTG	8 cut(s)	876, 895, 1901, 2196, 2673, 3195, 3551, 3790
BveI	ACCTGC	1 cut(s)	947
Cac8I	GCNNGC	8 cut(s)	836, 1100, 1636, 1662, 2415, 2550, 3349, 3831
CaiI	CAGNNNCTG	5 cut(s)	289, 305, 2701, 2738, 3263
CciI	TCATGA	2 cut(s)	1203, 3883
CfoI	GCGC	5 cut(s)	1698, 3275, 3309, 3413, 3493
Cfr13I	GGNCC	8 cut(s)	41, 64, 959, 1708, 2167, 2506, 4114, 4282
Csp6I	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2725, 3110, 3602, 4230
CspCI	CAANNNNNGTGG	2 cut(s)	2209, 2244
CviQI	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2725, 3110, 3602, 4230
DinI	GGCGCC	1 cut(s)	3274
EaeI	YGGCCR	1 cut(s)	3772
Eam1104I	CTCTTC	5 cut(s)	576, 1813, 2649, 3297, 3935
EarI	CTCTTC	5 cut(s)	576, 1813, 2649, 3297, 3935
Eco130I	CCWWGG	1 cut(s)	1755
Eco31I	GGTCTC	3 cut(s)	1618, 2677, 4389
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	6 cut(s)	41, 959, 1708, 2167, 2506, 4282
Eco47III	AGCGCT	1 cut(s)	3308
Eco57I	CTGAAG	1 cut(s)	3639
Eco81I	CCTNAGG	1 cut(s)	1728
Eco88I	CYCGRG	1 cut(s)	2488
Eco91I	GGTNACC	1 cut(s)	2633
EcoNI	CCTNNNNNAGG	2 cut(s)	1703, 3660
EcoO109I	RGGNCCY	4 cut(s)	959, 1708, 2167, 2506
EcoO65I	GGTNACC	1 cut(s)	2633
EcoRI	GAATTC	3 cut(s)	721, 1241, 1650
EcoRII	CCWGG	4 cut(s)	269, 532, 1930, 3060
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	1755
EcoT22I	ATGCAT	1 cut(s)	1492
EgeI	GGCGCC	1 cut(s)	3274
EheI	GGCGCC	1 cut(s)	3274
ErhI	CCWWGG	1 cut(s)	1755
FalI	AAGNNNNNCTT	4 cut(s)	394, 426, 2366, 2398
FaqI	GGGAC	3 cut(s)	2095, 2543, 3952
FauNDI	CATATG	1 cut(s)	890
FblI	GTMKAC	1 cut(s)	3794
FokI	GGATG	8 cut(s)	54, 148, 1235, 2309, 2456, 2569, 2803, 3716
FspBI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3113, 3254, 3348
FspI	TGCGCA	1 cut(s)	3412
GlaI	GCGC	5 cut(s)	1697, 3274, 3308, 3412, 3492
GsuI	CTGGAG	4 cut(s)	1265, 2688, 4102, 4376
HaeII	RGCGCY	3 cut(s)	3276, 3310, 3494
HaeIII	GGCC	8 cut(s)	66, 612, 1323, 1898, 2486, 3655, 3774, 4116
HapII	CCGG	3 cut(s)	187, 3775, 3834
HhaI	GCGC	5 cut(s)	1698, 3275, 3309, 3413, 3493
Hin1I	GRCGYC	1 cut(s)	3273
Hin6I	GCGC	5 cut(s)	1696, 3273, 3307, 3411, 3491
HinP1I	GCGC	5 cut(s)	1696, 3273, 3307, 3411, 3491
HincII	GTYRAC	2 cut(s)	1182, 2898
HindII	GTYRAC	2 cut(s)	1182, 2898
HindIII	AAGCTT	1 cut(s)	1412
HpaI	GTTAAC	1 cut(s)	2898
HpaII	CCGG	3 cut(s)	187, 3775, 3834
HpyCH4IV	ACGT	1 cut(s)	1026
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3077, 3422, 3431, 3780
HpySE526I	ACGT	1 cut(s)	1026
Hsp92I	GRCGYC	1 cut(s)	3273
HspAI	GCGC	5 cut(s)	1696, 3273, 3307, 3411, 3491
KasI	GGCGCC	1 cut(s)	3272
KspAI	GTTAAC	1 cut(s)	2898
LguI	GCTCTTC	1 cut(s)	3297
LmnI	GCTCC	9 cut(s)	536, 625, 823, 1381, 1537, 2470, 3077, 3826, 4083
LweI	GCATC	7 cut(s)	390, 1085, 1213, 1346, 1791, 2308, 2930
MaeI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3113, 3254, 3348
MaeII	ACGT	1 cut(s)	1026
MfeI	CAATTG	2 cut(s)	1154, 2831
MflI	RGATCY	5 cut(s)	302, 2070, 2888, 3040, 3958
MhlI	GDGCHC	5 cut(s)	463, 2266, 2968, 3551, 4123
Mly113I	GGCGCC	1 cut(s)	3273
MlyI	GAGTC	6 cut(s)	382, 644, 1431, 2978, 3269, 4046
MmeI	TCCRAC	2 cut(s)	2421, 3479
Mph1103I	ATGCAT	1 cut(s)	1492
MseI	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2595, 2646, 2897, 3512
MslI	CAYNNNNRTG	3 cut(s)	712, 1191, 3152
MspA1I	CMGCKG	2 cut(s)	2245, 2738
MspCI	CTTAAG	2 cut(s)	935, 1090
MspI	CCGG	3 cut(s)	187, 3775, 3834
MspR9I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3062
MunI	CAATTG	2 cut(s)	1154, 2831
Mva1269I	GAATGC	3 cut(s)	434, 1516, 2281
MvaI	CCWGG	4 cut(s)	271, 534, 1932, 3062
MwoI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3077, 3422, 3431, 3780
NarI	GGCGCC	1 cut(s)	3273
NciI	CCSGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	890
NheI	GCTAGC	1 cut(s)	3347
NlaIV	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3274, 3828, 3960
NmuCI	GTSAC	6 cut(s)	643, 705, 943, 2389, 2633, 4295
NsbI	TGCGCA	1 cut(s)	3412
NsiI	ATGCAT	1 cut(s)	1492
NspI	RCATGY	5 cut(s)	1449, 1638, 1664, 3520, 3602
OliI	CACNNNNGTG	2 cut(s)	712, 1191
PaeI	GCATGC	2 cut(s)	1638, 1664
PaeR7I	CTCGAG	1 cut(s)	2488
PagI	TCATGA	2 cut(s)	1203, 3883
PciI	ACATGT	2 cut(s)	3516, 3598
PciSI	GCTCTTC	1 cut(s)	3297
PctI	GAATGC	3 cut(s)	434, 1516, 2281
PfeI	GAWTC	9 cut(s)	35, 296, 1064, 1303, 1454, 2248, 2423, 3388, 4403
PflFI	GACNNNGTC	1 cut(s)	2510
PfoI	TCCNGGA	1 cut(s)	532
PleI	GAGTC	6 cut(s)	381, 643, 1431, 2978, 3268, 4046
PluTI	GGCGCC	1 cut(s)	3276
PpsI	GAGTC	6 cut(s)	381, 643, 1431, 2978, 3268, 4046
Ppu21I	YACGTR	1 cut(s)	1027
PpuMI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PscI	ACATGT	2 cut(s)	3516, 3598
PshAI	GACNNNNGTC	1 cut(s)	421
PsiI	TTATAA	2 cut(s)	564, 1463
Psp5II	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
Psp6I	CCWGG	4 cut(s)	269, 532, 1930, 3060
PspEI	GGTNACC	1 cut(s)	2633
PspGI	CCWGG	4 cut(s)	269, 532, 1930, 3060
PspN4I	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3274, 3828, 3960
PspPI	GGNCC	8 cut(s)	41, 64, 959, 1708, 2167, 2506, 4114, 4282
PspPPI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PspXI	VCTCGAGB	1 cut(s)	2488
PstI	CTGCAG	3 cut(s)	958, 3433, 4402
PstNI	CAGNNNCTG	5 cut(s)	289, 305, 2701, 2738, 3263
PsuI	RGATCY	5 cut(s)	302, 2070, 2888, 3040, 3958
PsyI	GACNNNGTC	1 cut(s)	2510
RsaI	GTAC	9 cut(s)	254, 282, 1088, 1476, 1560, 2726, 3111, 3603, 4231
RsaNI	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2725, 3110, 3602, 4230
RseI	CAYNNNNRTG	3 cut(s)	712, 1191, 3152
SapI	GCTCTTC	1 cut(s)	3297
SaqAI	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2595, 2646, 2897, 3512
Sau96I	GGNCC	8 cut(s)	41, 64, 959, 1708, 2167, 2506, 4114, 4282
ScaI	AGTACT	1 cut(s)	3111
SchI	GAGTC	6 cut(s)	382, 644, 1431, 2978, 3269, 4046
ScrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3062
SduI	GDGCHC	5 cut(s)	463, 2266, 2968, 3551, 4123
SfaNI	GCATC	7 cut(s)	390, 1085, 1213, 1346, 1791, 2308, 2930
SfcI	CTRYAG	5 cut(s)	954, 3176, 3429, 3552, 4398
SfoI	GGCGCC	1 cut(s)	3274
Sfr274I	CTCGAG	1 cut(s)	2488
SinI	GGWCC	6 cut(s)	41, 959, 1708, 2167, 2506, 4282
SlaI	CTCGAG	1 cut(s)	2488
SmiMI	CAYNNNNRTG	3 cut(s)	712, 1191, 3152
SpeI	ACTAGT	1 cut(s)	647
SphI	GCATGC	2 cut(s)	1638, 1664
SsiI	CCGC	3 cut(s)	2245, 2736, 4044
SspDI	GGCGCC	1 cut(s)	3272
SspI	AATATT	2 cut(s)	2098, 3185
SspMI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3113, 3254, 3348
StyD4I	CCNGG	5 cut(s)	185, 269, 532, 1930, 3060
StyI	CCWWGG	1 cut(s)	1755
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	9 cut(s)	193, 413, 1717, 2489, 2852, 3724, 3852, 3970, 4173
TatI	WGTACW	6 cut(s)	252, 280, 1558, 2724, 3109, 4229
TauI	GCSGC	2 cut(s)	2738, 4047
TfiI	GAWTC	9 cut(s)	35, 296, 1064, 1303, 1454, 2248, 2423, 3388, 4403
Tru1I	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2595, 2646, 2897, 3512
Tru9I	TTAA	8 cut(s)	936, 1091, 1860, 2343, 2595, 2646, 2897, 3512
TscAI	CASTG	8 cut(s)	876, 902, 1908, 2203, 2680, 3202, 3551, 3790
TseFI	GTSAC	6 cut(s)	643, 705, 943, 2389, 2633, 4295
Tsp45I	GTSAC	6 cut(s)	643, 705, 943, 2389, 2633, 4295
TspGWI	ACGGA	2 cut(s)	1301, 4225
TspRI	CASTG	8 cut(s)	876, 902, 1908, 2203, 2680, 3202, 3551, 3790
Tth111I	GACNNNGTC	1 cut(s)	2510
Vha464I	CTTAAG	2 cut(s)	935, 1090
VneI	GTGCAC	2 cut(s)	2964, 3547
VpaK11BI	GGWCC	6 cut(s)	41, 959, 1708, 2167, 2506, 4282
XagI	CCTNNNNNAGG	2 cut(s)	1703, 3660
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	5 cut(s)	1449, 1638, 1664, 3520, 3602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3648
XhoI	CTCGAG	1 cut(s)	2488
XmiI	GTMKAC	1 cut(s)	3794
XspI	CTAG	9 cut(s)	515, 648, 1275, 1325, 1869, 1985, 3113, 3254, 3348
ZrmI	AGTACT	1 cut(s)	3111
Zsp2I	ATGCAT	1 cut(s)	1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.