Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014259.1

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

22814 .. 28291

Gene Structure 5478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014259.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4425 bp

atgacggaggatttatggactggattttgtggggaatctgaagattctgagagtttgagttttcggtttctgattcatcctacttcatgcattaatcacgcattgaccattttccttgacatagttcttcttgtggtgctcttgttcagtatgtttatcaagtcatcaaaaagagttcatgttccagcacgatttctaggcttttcgagttggcaaatattctcggccattttcaatggcgctcttggatttgtgtacttgtgcttcggagcctggaatttagaagaggagctgaggaatacacgtactgctttgcctttgaattggtggttacttggtctctttcaaggcctcacatggttgcttttgagcttaactctaagcatcagggcgaagcaactgccaagacaaccttcaagagtgatgtgcatcctggcttttttgttttctggagttgtctttgctctatcgctcttcacagtcattttcagaaatgaaatgtcggttaagatagtactagatatcctaacttttccaggagcagcattgttgctgctatgtgttttcaaggggtataagtatgaagatggtgatgagatcatcagtgacgatggcctttatgcccctctcaatggtgagtccaatggcattagtaaaggtaatgatcatgcaaccccatttagcaaagctggattgttaagtaaaatgtcattttggtggttaaattcattgatgaaaagaggtagggagaaaactctggaggatgaagatataccgaagttgcgcaaggaagatagagcagaaagttgctatgcgatgttcttggagcaactaagcaagcagaaacaaattgagccatcttcccagccatcagtattaaagactataatcctatgccaccggaaggagattttactatctggtttctttgctttgctgaagatactcactatctgtgctggtcctttgcttctcaatgccttcattttggttgcagagggaaatgaaagtttcgagcatgaaggttatctgttagccggagcactttttgcttcgaaaaccattgaatccttgtcacaaaggcagtggtacttcaggtgcaggcttattggtttgaaagttaggtctttgctgacagcagccatttacaaaaagcaattgagattatctaatgctgctaagttgacacactcaggtggtgagatcatgaattatgttactgtggatgcttataggattggagagtttccattttggttccataagacttggactactagcgtccagctctgtttttctttggtaatttttttccgtgcagttggcctagctacatttgcagccttggtggtgatacttttgggtgtgatttgcaatgctccagttgctaagctacaacataagttccagagcaagcttatgaaggctcaagatgaaaggctcaaggctagttctgaggctctagtgaacatgaaggtcttaaagttatatgcatgggaaacacatttcaagaaggcaatagaaaagttaaggaaggaggagcacaaatggttatctgcaatgctgttaagaagagcatatagtacttatctcttttggtcaactcctgttttggtctctactgcaacatttggggcgtgctattttctcaaaattccgttacatgcaaacaatgttttcacttttatctctactttgagacttgttcaggaccccattcaaaccatacctgatgttattgcggttgtcattcaagccaaggttgcatttggtcgtattgtgaaattccttgaggcacctgagctgcaaacttcaaatgtccggaagtgcaacatgaagaatgtagctaactccattgaaattaagtcagctaatttttcatgggaagagaatttatcgaagtccatactgagaaatataaatttagaggttagacctggtgaaaaggtggctatatgtggtgaagtcggctcaggcaagtcaagccttctagctgcaattcttggagaaattccaaatgtgcaaggaaatattcaagtttatgggaagattgcctatgtttctcaaacagcatggatccagtcaggaactatacaagaaaatattctctttggttcttgtatggatagtcagagatatcgagagacgcttgagagatgctcactagtaaaggaccttgagctgcttccctacggtgaccttactgaaataggagagagaggggtgaatctaagtggaggtcagaagcagcggatccaacttgcacgcgctctctatcaggatgctgatatatatctattggatgatccattcagtgctgttgatgcacatactgccacaaacttatttaatgaatatgtaatggaagcactttcaggcaagacagtactacttgtgacccatcaagttgatttcctgcctgcatttgatttcgttttgttgatgatggatggggagatcctacaagcagctccttatcagcatctattggctttaagccaagaattccagaaccttgtcaatgcacacaaagaaactgctggttccgaaaggctttcagatgtcacttctgctcaaaaatctggaatatcatctagagagattaagaagagttatgttgagaagccattaaaagaaaataaagttgaccaattgattaaacttgaagagagagaaacaggtgacacaggttttaagccatacatactgtatctgaagcagaacaaagggttcctgtacttctcaattgccgtttgtctacacttcacttccattatgagtcagattgcacagaactcttggatggctgctaatgttgataatccgagtattagcacattgcggttgcttgtggtttacttatcgattggattctccgcaacatttatttttctgtttagatctcttgcagcagttgtcgggggccttgagacatcaaagtctttgttctcacaactactaaactccctttttcgtgcacccatgtcattctatgactcaacaccactgggaaggatacttagtcgggtttcatctgatctgagtatcacagatcttgatattccattcagcatagtatttgcttgtggagttaccatgaatgcctattgcaatcttggggtattgactgttgttacctggcaagtcctgtttgtctccatcccaatggtctgtgtcgcaattcagctacagaagtactatttttctactgcaaaagcgttgatgaggatcaatggaacaactaagtcctttgtagcaaaccatctcgcagagtctgtctcaggagccattaccataagagctttcaatgaagaagagcgcttctcggcaaagaactttcacctcattgacataaatgctagtccttatttccacaatttttctgcaaatgagtggttaattcaacgattagggatgatcagcgcggtggttcttgcctctgcagcactttgtatggttttgcttcctcatggaacttttacctctgggtttattgggatggcactttcttatggtctatcattaaatgtgtccttgatcgactcaattcagaaccagtgcactatagcaaattatatcatttctgttgaaagactaaatcaatacatgcacattcctagtgaagccccggaagtaatggagggaaaccgtccaccagccaactggcctgttgtaggaaaagtggagatacaaaatttgcggatgagatatagggatgacacaccacttgtacttcgagggattagttgtgtttttgaaggaggacataagattggtattgttggccggacaggcagtgggaagtctacactcatcagtgctctatttcggctggtcgagccaaccggagggaaggtcatagtcgatggcattgacatctctactataggacttcatgatctgaggtcaagattcggaataatacctcaagaccctactctctttaatggcaccgtcagatacaatttggaccccttatctcaacattcagaccaagaaatatgggaggttcttgggaagtgtcagcttcgagaggctgttgaggagaaagaaaaaggcttggactcgttagttgtgcatgatggatcaaactggagcatggggcaaaggcaactgttctgcctcgggcgcgctcttctaaggagaagtcgggtattggtgcttgatgaagcaactgcatccatcgacaatgcaactgatacgatcctgcagaagactataaggactgagtttgaatcttgtacagtaattacagtagcccacaggatacctactgtgatggattgcacaatggttcttgccattagtgaaggagagatagtggagtatgatgagccgatgaggttgatgaagagagaaggctcgctgtttgggcagcttgtcaaggagtactggtctcatctccagtctgcagaatctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1474

Amino Acids

164.99

Weight (kDa)

7.98

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2938
Acc16I	TGCGCA	1 cut(s)	785
AccB1I	GGYRCC	2 cut(s)	1795, 3950
AccI	GTMKAC	2 cut(s)	2758, 3806
AccII	CGCG	3 cut(s)	2268, 3425, 4131
AccIII	TCCGGA	1 cut(s)	1821
AciI	CCGC	6 cut(s)	1742, 2251, 2842, 2877, 3425, 3700
AclWI	GGATC	9 cut(s)	2071, 2084, 2248, 2261, 2300, 2452, 3236, 4093, 4198
AcoI	YGGCCR	2 cut(s)	225, 3784
AcsI	RAATTY	9 cut(s)	277, 724, 1653, 1784, 1891, 1921, 2010, 2504, 3694
AcuI	CTGAAG	4 cut(s)	60, 959, 1078, 2735
AfeI	AGCGCT	1 cut(s)	3320
AfiI	CCNNNNNNNGG	4 cut(s)	632, 904, 3674, 3848
AflIII	ACRYGT	1 cut(s)	302
AhlI	ACTAGT	1 cut(s)	2164
AjnI	CCWGG	5 cut(s)	272, 432, 535, 1936, 3137
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AleI	CACNNNNGTG	1 cut(s)	1194
Alw21I	GWGCWC	6 cut(s)	141, 1045, 1545, 2980, 3563, 3823
Alw26I	GTCTC	8 cut(s)	344, 1621, 1693, 2138, 2924, 3160, 3283, 4401
Alw44I	GTGCAC	2 cut(s)	2976, 3559
AlwI	GGATC	9 cut(s)	2071, 2084, 2248, 2261, 2300, 2452, 3236, 4093, 4198
AlwNI	CAGNNNCTG	1 cut(s)	3275
Ama87I	CYCGRG	1 cut(s)	4124
Aor13HI	TCCGGA	1 cut(s)	1821
Aor51HI	AGCGCT	1 cut(s)	3320
AoxI	GGCC	7 cut(s)	225, 349, 613, 1324, 2923, 3665, 3784
ApaLI	GTGCAC	2 cut(s)	2976, 3559
ApoI	RAATTY	9 cut(s)	277, 724, 1653, 1784, 1891, 1921, 2010, 2504, 3694
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	2103
AspLEI	GCGC	7 cut(s)	242, 786, 2270, 3321, 3425, 4131, 4133
AspS9I	GGNCC	5 cut(s)	962, 1711, 2173, 2923, 3970
AsuC2I	CCSGG	1 cut(s)	3629
AsuII	TTCGAA	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	4124
AvaII	GGWCC	4 cut(s)	962, 1711, 2173, 3970
BaeGI	GKGCMC	2 cut(s)	2980, 3563
BamHI	GGATCC	2 cut(s)	2076, 2253
BanI	GGYRCC	2 cut(s)	1795, 3950
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
BbsI	GAAGAC	1 cut(s)	4220
Bbv12I	GWGCWC	6 cut(s)	141, 1045, 1545, 2980, 3563, 3823
BbvCI	CCTCAGC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	2735
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	5 cut(s)	274, 434, 537, 1938, 3139
BciVI	GTATCC	2 cut(s)	3009, 4260
BclI	TGATCA	2 cut(s)	664, 3417
BcnI	CCSGG	1 cut(s)	3629
BcoDI	GTCTC	8 cut(s)	344, 1621, 1693, 2138, 2924, 3160, 3283, 4401
BcuI	ACTAGT	1 cut(s)	2164
BfmI	CTRYAG	6 cut(s)	3188, 3441, 3564, 3885, 4208, 4410
BfoI	RGCGCY	2 cut(s)	243, 3322
BfuI	GTATCC	2 cut(s)	3009, 4260
BglI	GCCNNNNNGGC	1 cut(s)	3792
BglII	AGATCT	2 cut(s)	2900, 3052
BlpI	GCTNAGC	1 cut(s)	1389
BmcAI	AGTACT	5 cut(s)	516, 1585, 2388, 3197, 4391
Bme1390I	CCNGG	6 cut(s)	274, 434, 537, 1938, 3139, 3629
Bme18I	GGWCC	4 cut(s)	962, 1711, 2173, 3970
BmeT110I	CYCGRG	1 cut(s)	4124
BmgT120I	GGNCC	5 cut(s)	962, 1711, 2173, 2923, 3970
BmrFI	CCNGG	6 cut(s)	274, 434, 537, 1938, 3139, 3629
BmrI	ACTGGG	1 cut(s)	3017
BmsI	GCATC	8 cut(s)	393, 438, 1216, 2147, 2272, 2314, 2491, 4187
BmuI	ACTGGG	1 cut(s)	3017
BpiI	GAAGAC	1 cut(s)	4220
BplI	GAGNNNNNCTC	8 cut(s)	361, 393, 2144, 2176, 3263, 3295, 3308, 3340
BpmI	CTGGAG	5 cut(s)	471, 779, 1365, 4114, 4388
Bpu10I	CCTNAGC	3 cut(s)	293, 1800, 1972
Bpu1102I	GCTNAGC	1 cut(s)	1389
Bpu14I	TTCGAA	1 cut(s)	1055
BpuEI	CTTGAG	7 cut(s)	1413, 1427, 1811, 2171, 2198, 2948, 3912
BpuMI	CCSGG	1 cut(s)	3629
Bsa29I	ATCGAT	1 cut(s)	2864
BsaAI	YACGTR	1 cut(s)	305
BsaBI	GATNNNNATC	3 cut(s)	428, 2292, 3227
BsaI	GGTCTC	3 cut(s)	344, 1621, 4401
BsaJI	CCNNGG	4 cut(s)	1344, 1758, 3627, 4123
BsaWI	WCCGGW	3 cut(s)	900, 1821, 3845
BsaXI	ACNNNNNCTCC	6 cut(s)	3840, 3870, 4305, 4335, 4379, 4409
Bsc4I	CCNNNNNNNGG	4 cut(s)	632, 904, 3674, 3848
Bse1I	ACTGG	9 cut(s)	25, 1382, 2080, 3012, 3556, 3668, 4097, 4397, 4405
Bse3DI	GCAATG	3 cut(s)	1381, 1566, 2837
Bse8I	GATNNNNATC	3 cut(s)	428, 2292, 3227
BseAI	TCCGGA	1 cut(s)	1821
BseBI	CCWGG	5 cut(s)	274, 434, 537, 1938, 3139
BseCI	ATCGAT	1 cut(s)	2864
BseDI	CCNNGG	4 cut(s)	1344, 1758, 3627, 4123
BseJI	GATNNNNATC	3 cut(s)	428, 2292, 3227
BseLI	CCNNNNNNNGG	4 cut(s)	632, 904, 3674, 3848
BseMI	GCAATG	3 cut(s)	1381, 1566, 2837
BseNI	ACTGG	9 cut(s)	25, 1382, 2080, 3012, 3556, 3668, 4097, 4397, 4405
BsePI	GCGCGC	1 cut(s)	4129
BseRI	GAGGAG	3 cut(s)	302, 1553, 4058
BseSI	GKGCMC	2 cut(s)	2980, 3563
BseYI	CCCAGC	1 cut(s)	864
BsgI	GTGCAG	2 cut(s)	1120, 1338
Bsh1236I	CGCG	3 cut(s)	2268, 3425, 4131
BshFI	GGCC	7 cut(s)	227, 351, 615, 1326, 2925, 3667, 3786
BshNI	GGYRCC	2 cut(s)	1795, 3950
BshVI	ATCGAT	1 cut(s)	2864
BsiHKAI	GWGCWC	6 cut(s)	141, 1045, 1545, 2980, 3563, 3823
BsiHKCI	CYCGRG	1 cut(s)	4124
BsiSI	CCGG	6 cut(s)	901, 1038, 1822, 3629, 3787, 3846
BslI	CCNNNNNNNGG	4 cut(s)	632, 904, 3674, 3848
BsmAI	GTCTC	8 cut(s)	344, 1621, 1693, 2138, 2924, 3160, 3283, 4401
BsmBI	CGTCTC	1 cut(s)	2138
BsmI	GAATGC	1 cut(s)	3106
BsnI	GGCC	7 cut(s)	227, 351, 615, 1326, 2925, 3667, 3786
Bso31I	GGTCTC	3 cut(s)	344, 1621, 4401
BsoBI	CYCGRG	1 cut(s)	4124
Bsp119I	TTCGAA	1 cut(s)	1055
Bsp1286I	GDGCHC	6 cut(s)	141, 1045, 1545, 2980, 3563, 3823
Bsp13I	TCCGGA	1 cut(s)	1821
Bsp1407I	TGTACA	1 cut(s)	4241
Bsp1720I	GCTNAGC	1 cut(s)	1389
BspACI	CCGC	6 cut(s)	1742, 2251, 2842, 2877, 3425, 3700
BspANI	GGCC	7 cut(s)	227, 351, 615, 1326, 2925, 3667, 3786
BspDI	ATCGAT	1 cut(s)	2864
BspEI	TCCGGA	1 cut(s)	1821
BspFNI	CGCG	3 cut(s)	2268, 3425, 4131
BspHI	TCATGA	2 cut(s)	1206, 3895
BspMAI	CTGCAG	3 cut(s)	3445, 4212, 4414
BspPI	GGATC	9 cut(s)	2071, 2084, 2248, 2261, 2300, 2452, 3236, 4093, 4198
BspQI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
BspT104I	TTCGAA	1 cut(s)	1055
BspT107I	GGYRCC	2 cut(s)	1795, 3950
BspTNI	GGTCTC	3 cut(s)	344, 1621, 4401
BsrDI	GCAATG	3 cut(s)	1381, 1566, 2837
BsrGI	TGTACA	1 cut(s)	4241
BsrI	ACTGG	9 cut(s)	25, 1382, 2080, 3012, 3556, 3668, 4097, 4397, 4405
BssECI	CCNNGG	4 cut(s)	1344, 1758, 3627, 4123
BssHII	GCGCGC	1 cut(s)	4129
BssT1I	CCWWGG	2 cut(s)	1344, 1758
Bst2UI	CCWGG	5 cut(s)	274, 434, 537, 1938, 3139
Bst6I	CTCTTC	9 cut(s)	279, 479, 1567, 1881, 2603, 2661, 3309, 4140, 4346
BstAPI	GCANNNNNTGC	2 cut(s)	1049, 2333
BstAUI	TGTACA	1 cut(s)	4241
BstBAI	YACGTR	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	1055
BstC8I	GCNNGC	8 cut(s)	839, 1103, 1415, 1639, 2266, 2421, 4131, 4364
BstEII	GGTNACC	1 cut(s)	2195
BstENI	CCTNNNNNAGG	1 cut(s)	3672
BstFNI	CGCG	3 cut(s)	2268, 3425, 4131
BstH2I	RGCGCY	2 cut(s)	243, 3322
BstHHI	GCGC	7 cut(s)	242, 786, 2270, 3321, 3425, 4131, 4133
BstMAI	GTCTC	8 cut(s)	344, 1621, 1693, 2138, 2924, 3160, 3283, 4401
BstNI	CCWGG	5 cut(s)	274, 434, 537, 1938, 3139
BstNSI	RCATGY	2 cut(s)	1667, 3610
BstPI	GGTNACC	1 cut(s)	2195
BstSCI	CCNGG	6 cut(s)	272, 432, 535, 1936, 3137, 3627
BstSFI	CTRYAG	6 cut(s)	3188, 3441, 3564, 3885, 4208, 4410
BstSLI	GKGCMC	2 cut(s)	2980, 3563
BstUI	CGCG	3 cut(s)	2268, 3425, 4131
BstV2I	GAAGAC	1 cut(s)	4220
BstX2I	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
BstXI	CCANNNNNNTGG	2 cut(s)	3166, 3663
BstYI	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
Bsu15I	ATCGAT	1 cut(s)	2864
BsuI	GTATCC	2 cut(s)	3009, 4260
BsuRI	GGCC	7 cut(s)	227, 351, 615, 1326, 2925, 3667, 3786
BsuTUI	ATCGAT	1 cut(s)	2864
BtgZI	GCGATG	1 cut(s)	830
BtsI	GCAGTG	2 cut(s)	1091, 3802
BtsIMutI	CAGTG	7 cut(s)	610, 1091, 2320, 3005, 3563, 3802, 3823
Cac8I	GCNNGC	8 cut(s)	839, 1103, 1415, 1639, 2266, 2421, 4131, 4364
CaiI	CAGNNNCTG	1 cut(s)	3275
CciI	TCATGA	2 cut(s)	1206, 3895
CfoI	GCGC	7 cut(s)	242, 786, 2270, 3321, 3425, 4131, 4133
Cfr13I	GGNCC	5 cut(s)	962, 1711, 2173, 2923, 3970
ClaI	ATCGAT	1 cut(s)	2864
CseI	GACGC	2 cut(s)	1270, 2155
CsiI	ACCWGGT	1 cut(s)	1936
CspCI	CAANNNNNGTGG	2 cut(s)	1067, 1102
DrdI	GACNNNNNNGTC	1 cut(s)	2938
DseDI	GACNNNNNNGTC	1 cut(s)	2938
EaeI	YGGCCR	2 cut(s)	225, 3784
Eam1104I	CTCTTC	9 cut(s)	279, 479, 1567, 1881, 2603, 2661, 3309, 4140, 4346
EarI	CTCTTC	9 cut(s)	279, 479, 1567, 1881, 2603, 2661, 3309, 4140, 4346
Eco130I	CCWWGG	2 cut(s)	1344, 1758
Eco147I	AGGCCT	1 cut(s)	351
Eco31I	GGTCTC	3 cut(s)	344, 1621, 4401
Eco32I	GATATC	2 cut(s)	523, 2138
Eco47I	GGWCC	4 cut(s)	962, 1711, 2173, 3970
Eco47III	AGCGCT	1 cut(s)	3320
Eco57I	CTGAAG	4 cut(s)	60, 959, 1078, 2735
Eco88I	CYCGRG	1 cut(s)	4124
Eco91I	GGTNACC	1 cut(s)	2195
EcoNI	CCTNNNNNAGG	1 cut(s)	3672
EcoO109I	RGGNCCY	3 cut(s)	1711, 2173, 2923
EcoO65I	GGTNACC	1 cut(s)	2195
EcoRI	GAATTC	1 cut(s)	2504
EcoRII	CCWGG	5 cut(s)	272, 432, 535, 1936, 3137
EcoRV	GATATC	2 cut(s)	523, 2138
EcoT14I	CCWWGG	2 cut(s)	1344, 1758
EcoT22I	ATGCAT	2 cut(s)	92, 1495
ErhI	CCWWGG	2 cut(s)	1344, 1758
Esp3I	CGTCTC	1 cut(s)	2138
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FbaI	TGATCA	2 cut(s)	664, 3417
FblI	GTMKAC	2 cut(s)	2758, 3806
FspI	TGCGCA	1 cut(s)	785
GlaI	GCGC	7 cut(s)	241, 785, 2269, 3320, 3424, 4130, 4132
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	5 cut(s)	471, 779, 1365, 4114, 4388
HaeII	RGCGCY	2 cut(s)	243, 3322
HaeIII	GGCC	7 cut(s)	227, 351, 615, 1326, 2925, 3667, 3786
HapII	CCGG	6 cut(s)	901, 1038, 1822, 3629, 3787, 3846
HgaI	GACGC	2 cut(s)	1270, 2155
HhaI	GCGC	7 cut(s)	242, 786, 2270, 3321, 3425, 4131, 4133
Hin6I	GCGC	7 cut(s)	240, 784, 2268, 3319, 3423, 4129, 4131
HinP1I	GCGC	7 cut(s)	240, 784, 2268, 3319, 3423, 4129, 4131
HincII	GTYRAC	3 cut(s)	1185, 1602, 2647
HindII	GTYRAC	3 cut(s)	1185, 1602, 2647
HindIII	AAGCTT	1 cut(s)	1415
HpaII	CCGG	6 cut(s)	901, 1038, 1822, 3629, 3787, 3846
HpyCH4IV	ACGT	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	304
HspAI	GCGC	7 cut(s)	240, 784, 2268, 3319, 3423, 4129, 4131
Kpn2I	TCCGGA	1 cut(s)	1821
Ksp22I	TGATCA	2 cut(s)	664, 3417
LguI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
LweI	GCATC	8 cut(s)	393, 438, 1216, 2147, 2272, 2314, 2491, 4187
MabI	ACCWGGT	1 cut(s)	1936
MaeII	ACGT	1 cut(s)	304
MfeI	CAATTG	3 cut(s)	1157, 2651, 2745
MflI	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
MhlI	GDGCHC	6 cut(s)	141, 1045, 1545, 2980, 3563, 3823
MlyI	GAGTC	6 cut(s)	647, 2788, 2990, 3281, 3536, 4058
MmeI	TCCRAC	1 cut(s)	2281
Mph1103I	ATGCAT	2 cut(s)	92, 1495
MroI	TCCGGA	1 cut(s)	1821
MroXI	GAANNNNTTC	1 cut(s)	2103
MslI	CAYNNNNRTG	3 cut(s)	715, 1194, 3164
MspA1I	CMGCKG	1 cut(s)	2251
MspI	CCGG	6 cut(s)	901, 1038, 1822, 3629, 3787, 3846
MspR9I	CCNGG	6 cut(s)	274, 434, 537, 1938, 3139, 3629
MunI	CAATTG	3 cut(s)	1157, 2651, 2745
Mva1269I	GAATGC	1 cut(s)	3106
MvaI	CCWGG	5 cut(s)	274, 434, 537, 1938, 3139
MvnI	CGCG	3 cut(s)	2268, 3425, 4131
NciI	CCSGG	1 cut(s)	3629
NmeAIII	GCCGAG	2 cut(s)	203, 3305
NmuCI	GTSAC	6 cut(s)	605, 1074, 2195, 2395, 2563, 2681
NsbI	TGCGCA	1 cut(s)	785
NsiI	ATGCAT	2 cut(s)	92, 1495
NspI	RCATGY	2 cut(s)	1667, 3610
NspV	TTCGAA	1 cut(s)	1055
OliI	CACNNNNGTG	1 cut(s)	1194
PagI	TCATGA	2 cut(s)	1206, 3895
PauI	GCGCGC	1 cut(s)	4129
PceI	AGGCCT	1 cut(s)	351
PciSI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
PctI	GAATGC	1 cut(s)	3106
PdmI	GAANNNNTTC	1 cut(s)	2103
PfeI	GAWTC	9 cut(s)	35, 44, 73, 1067, 2227, 2871, 3912, 4235, 4415
PfoI	TCCNGGA	1 cut(s)	535
PleI	GAGTC	6 cut(s)	646, 2787, 2990, 3280, 3536, 4058
PpsI	GAGTC	6 cut(s)	646, 2787, 2990, 3280, 3536, 4058
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	2 cut(s)	1711, 2173
PshBI	ATTAAT	1 cut(s)	93
Psp5II	RGGWCCY	2 cut(s)	1711, 2173
Psp6I	CCWGG	5 cut(s)	272, 432, 535, 1936, 3137
PspEI	GGTNACC	1 cut(s)	2195
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	5 cut(s)	272, 432, 535, 1936, 3137
PspPI	GGNCC	5 cut(s)	962, 1711, 2173, 2923, 3970
PspPPI	RGGWCCY	2 cut(s)	1711, 2173
PstI	CTGCAG	3 cut(s)	3445, 4212, 4414
PstNI	CAGNNNCTG	1 cut(s)	3275
PsuI	RGATCY	5 cut(s)	2076, 2253, 2457, 2900, 3052
PteI	GCGCGC	1 cut(s)	4129
RseI	CAYNNNNRTG	3 cut(s)	715, 1194, 3164
SapI	GCTCTTC	4 cut(s)	479, 1567, 3309, 4140
Sau96I	GGNCC	5 cut(s)	962, 1711, 2173, 2923, 3970
ScaI	AGTACT	5 cut(s)	516, 1585, 2388, 3197, 4391
SchI	GAGTC	6 cut(s)	647, 2788, 2990, 3281, 3536, 4058
ScrFI	CCNGG	6 cut(s)	274, 434, 537, 1938, 3139, 3629
SduI	GDGCHC	6 cut(s)	141, 1045, 1545, 2980, 3563, 3823
SexAI	ACCWGGT	1 cut(s)	1936
SfaNI	GCATC	8 cut(s)	393, 438, 1216, 2147, 2272, 2314, 2491, 4187
SfcI	CTRYAG	6 cut(s)	3188, 3441, 3564, 3885, 4208, 4410
SfuI	TTCGAA	1 cut(s)	1055
SinI	GGWCC	4 cut(s)	962, 1711, 2173, 3970
SmiMI	CAYNNNNRTG	3 cut(s)	715, 1194, 3164
SmlI	CTYRAG	7 cut(s)	1428, 1442, 1790, 2150, 2177, 2927, 3927
SmoI	CTYRAG	7 cut(s)	1428, 1442, 1790, 2150, 2177, 2927, 3927
SpeI	ACTAGT	1 cut(s)	2164
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	6 cut(s)	1742, 2251, 2842, 2877, 3425, 3700
SspI	AATATT	3 cut(s)	219, 2032, 2104
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	6 cut(s)	272, 432, 535, 1936, 3137, 3627
StyI	CCWWGG	2 cut(s)	1344, 1758
TaiI	ACGT	1 cut(s)	307
TatI	WGTACW	9 cut(s)	255, 514, 1583, 2386, 2736, 3195, 3730, 4241, 4389
TfiI	GAWTC	9 cut(s)	35, 44, 73, 1067, 2227, 2871, 3912, 4235, 4415
TscAI	CASTG	7 cut(s)	610, 1091, 2320, 3012, 3563, 3802, 3823
TseFI	GTSAC	6 cut(s)	605, 1074, 2195, 2395, 2563, 2681
Tsp45I	GTSAC	6 cut(s)	605, 1074, 2195, 2395, 2563, 2681
TspGWI	ACGGA	3 cut(s)	20, 1304, 1647
TspRI	CASTG	7 cut(s)	610, 1091, 2320, 3012, 3563, 3802, 3823
VneI	GTGCAC	2 cut(s)	2976, 3559
VpaK11BI	GGWCC	4 cut(s)	962, 1711, 2173, 3970
VspI	ATTAAT	1 cut(s)	93
XagI	CCTNNNNNAGG	1 cut(s)	3672
XapI	RAATTY	9 cut(s)	277, 724, 1653, 1784, 1891, 1921, 2010, 2504, 3694
XbaI	TCTAGA	1 cut(s)	2594
XceI	RCATGY	2 cut(s)	1667, 3610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3660
XmiI	GTMKAC	2 cut(s)	2758, 3806
XmnI	GAANNNNTTC	1 cut(s)	2103
ZrmI	AGTACT	5 cut(s)	516, 1585, 2388, 3197, 4391
Zsp2I	ATGCAT	2 cut(s)	92, 1495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.