Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

30680906 .. 30687318

Gene Structure 6413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1213600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4290 bp

ATGCTCTTGTTTAACATGCTTCAAAAGCCATCGTCGAAATCACTTCACATTCCAGCCCGATATCAAGGCTTTTCGGGTTTGCAGATAGCCTCTGCTGTTGTCAATGGCTGCCTTGGAATTGTGTACTTGGGGCTGGGAGTCTGGATTCTGGAAGAGAATCTGAGGAGTACTCGTACTGCTTTGCCTTTGAATTGGTGGCTACTTTCGTTGTTTCAAGGGTTCACATGGTTGGTGGTTAGTTTAACTATAAGCATCCGCGGAAGAAAGCTTCCAAGGAAGCCGTCAAGATTGTTGTCCATCCTTGCGTTCTTGTTTTCCGGAGTCGTCTGCGCTGCATCGCTCTTTGCTGCCATTTTCAGAAAAGAATTGTCAGCAAAGACTGTATTAGATATATTGTCTTTCCCAGGAGCAACATTGTTGCTGTTATGTGCGTATAAGGGGAGTAAATATGGAGATGGTGACGAGAGCATCACCGCAACTGACCTTTATACGCCTCTGAACGGTGAGTCCAACGGCGGCATCTGTAAAAGTGATCATGTTACGCCGTTTAGCAAAGCTGGATTTTTCAGTAAAGCCACAATCTGGTGGCTGAACTCGCTGATGAAAAAGGGTAGGGAGAAAACTCTAGAGGAAGAGGATATACCCAAGCTGCGTGAGGAAGATCGAGCAGAAAGTTGCTATTTGCAGTACTTGGAGCGGTTGAACAAACAGAAACAAATCGAACCTTCTTCTCAACCTTCAGTACTAAGAACAATAGTCATGTGCCACTGGAAAGACATTTTACTGTCTGGCTTCTTTGCTTTGCTGAAGGTACTCACCGTCTCTGCTTGTCCACTGGTTCTTAACGCCTTCATATTGGTTGCCGAGGGAAAAGGAAGCTTCAAATATGAAGGGTACGCGTTAGCCATAGCACTTTTCCTTTCAAAGATCACGGAATCCATTTCACAACGGCAATGGTACTTACGATCCAGGCTTATTGGTGTGAAAATCAAGTCTTTACTCACATCGGCCATTTACAAGAAGCAATTGAGATTATCGAATGCTGCTAAGTTGACACACTCAGGTGGTGAGATTATGAATTACGTTACTGTGGATGCTTATAGGATCGGAGAGTTCCCATATTGGTTCCACCAAACTTGGACGACCGGCCTCCAGCTCTGTCTTGCATTGGTGATTCTTTTCCGCGCAGTTGGCCTGGCTACGATTGCAGCGTTGGTGGTGATAGTTTTGACAGTGATTTGCAATGCTCCAGTTGCTAAGTTACAACATAAGTTTCAGTCTAAGCTTATGGTGGCACAAGACGAAAGACTGAAGGCTAGTTCCGAGGCTCTTGTGAACATGAAGGTGTTGAAGTTGTATGCATGGGAAACTCATTTCAAGAAGGCGATAGAGAGGTTAAGGAAGGAGGAGCACAAATGGTTATCTGCAGTGCAGTATAGAAAAGCGTATAATTCCTATCTCTTTTGGTCGTCCCCTGTTCTGGTGTCTGCTGCAACCTTTGGGGCATGTTATTTTCTCAAGGTTCCGTTGCATGCGAACAATGTTTTTACTTTCGTAGCAACTTTACGCCTTGTTCAGGATCCCATTAGATCAATTCCTGAGGTTATTGGGGTTGTCATTCAAGCGAAGGTTGCGTTTGAACGTATTGTGAAATTCCTTGAGGCACCAGAGCTGCAGACTTCAAATGTCCAGAAGAGGAACATGGAGAATGTATCCCACTCCATTGTTATTAAGTCGGCTGATTTTTCATGGGTGGAGAACATTTCGAAGGCCACTCTGAGAAATATAAACTTAGAGGTTAGACCTGGTGAAAAGGTTGCTATATGCGGAGAAGTCGGCTCAGGCAAATCAAGCCTTTTAGCTGCAATTCTTGGAGAAATTCCAAATGTTCGAGGAAATATTCAAGTTTTTGGGAAGACGGCATATGTTTCTCAAACAGCATGGATTCAGACAGGGACGATCCAAGAAAATATTTTGTTTGGTTCTCCAATGGATACTGAAAGATACCGAGAAACACTTGAGAGGTGTTCACTTGTAAAGGACCTTGAGCTGCTCCCCTATGGCGACCTTACTGAAATAGGGGAGAGAGGGGTCAATCTGAGCGGTGGTCAGAAGCAGCGAATCCAACTTGCCCGTGCTCTCTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCTACAAACTTATTCAATGAATATGTTATGGAAGCACTTTCAGGGAAGACGGTTTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCTGTTTTGTTGATGTTAGATGGGGAAATCCTACAAGCAGCTCCTTATCACCATCTATTGGCCTCAAGCCAAGAGTTTCAGGATCTTGTGAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCAGATGCCACTGCGGCCCAAACTGGAATATCGTCCAGAGAGATTAAGAAGACATATGTAGAAAAGCAACTCAAACCAGAAAAAGGTGACCAATTGATTAAACGAGAAGAGAGAGAAACAGGAGAACTAGGTGTTAAGCCGTTCGTACTGTATTTGAAGCAGAAGAATGGATTCTTGTACTTCTCAGCCGCAGTTCTTTTACACTTCATTTTCGTTATGAGTCAGATAGGGCAGAACTCTTGGATGGCTGCTAACGTTGACAATCCCAATGTTAGCACATTGCGATTGATTGCGGTTTACTTGTTGATTGGATTTTCCGCAACATTTATTCTACTGTTCAGATCTATTTTAACAGTTATTATGGGTCTTGAGGCATCTCAGTCTTTGTTCTCACAGCTACTGAGTTCCCTTTTCCGTGCACCCATGTCTTTTTATGACTCAACACCTCTGGGAAGGATACTTAGTCGGGTGTCATCTGATCTGAGTATCGTAGATCTTGATGTTCCGTTCAACCTAGTCTTTGCCTGTGGGTCTACTATGAACGCTTATGCCAATCTCGGAGTACTGGCTGTCGTTACCTGGCAAGTCCTGTTTGTCTCCATACCGATGATCTATGTGGCAATTTCCCTACAGAAATACTACTTTTCGACTGGAAAAGAGTTGATGCGAATCAATGGCACAACCAAGTCCCTTGTAGCAAACCATGTAGCAGAGTCGGTGTCAGGAGCGATTACAATAAGAGCTTTCCATGAAGAAGAGCGGTTCTTGGAGAAGAACTTTGATCTCATTGACACAAATGCTAGTCCTTATTTCCACAGTTTTGCGGCGAATGAATGGTTGATCCTACGGCTAGAATTTATAAGCGCAACCGTTCTTTCTTCTGCAGCACTCTGTATGACTTTGCTTCCTCCTGGAACTTTCAGCGCTGGATTCATTGGGATGGCACTTTCGTATGGTCTTTCATTGAACGTTTCCTTGATGTTTTCAATTCAGATCCAGTGCAGTATCGCAAATTACATTATTTCTGTTGAAAGACTAGATCAGTACATGAATATACCGAGTGAAGCCCCTGAAGTAGTAGAAGGAAACCGTCCTCCAACCAATTGGCCCGCTGTAGGTAAAGTCGAGATACAAAATTTGCAGATCAGATATAGGCCCGATACACCACTCGTTCTTCGTGGGATCAGTTGCATTTTTGAAGGAGGACACAAGATTGGTATTGTTGGTCGTACAGGCAGTGGAAAGTCTACTCTCATAGGTGCTCTATTTCGTTTAGTAGAGCCAGCGGGAGGGAAGATTATAGTCGATGGCATTGACATCTCTACAATCGGATTGCATGATCTAAGGTCGCGTTTTGGAATAATACCTCAAGATCCTACCCTCTTCAACGGAACTGTGAGATACAATTTGGATCCCTTGTCTCAACATTCAGATGACGAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGAGAGCCTGTTCAGGAGAAGGAAAGCGGCTTAGACTCCTTAGTTGTGGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTGTTCTGTTTGGGGCGTGCCCTTTTGAGAAGAAGTCGGGTACTAGTGCTTGATGAAGCAACCGCATCAATTGACAATGCCACTGATACAATTCTTCAGAAAACTATCCGAACTGAATTTGCAGACTGCACTGTGATCACGGTAGCTCACAGGATACCGACTGTGATGGATTGTTCAATGGTTCTTGCCATCAGTGACGGACAAATTGTGGAGTATGACGAGCCAATGAACTTGATGAGAAGAGAAGGCTCGCTATTTGGGCAGCTTGTCAAGGAATACTGGTCTCATCTCCAGTCTGCAGAATCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1430

Amino Acids

159.03

Weight (kDa)

8.35

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	1 - 150	8.1e-66	ABCC10 N-terminal domain
ABC_membrane	PF00664	261 - 527	7.7e-23	ABC transporter transmembrane region
ABC_tran	PF00005	593 - 727	8.8e-22	ABC transporter
ABC_membrane	PF00664	866 - 1125	8e-26	ABC transporter transmembrane region
ABC_tran	PF00005	1200 - 1348	7.6e-25	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3284
AccB1I	GGYRCC	1 cut(s)	1663
AccB7I	CCANNNNNTGG	2 cut(s)	582, 2356
AccBSI	CCGCTC	3 cut(s)	697, 2103, 3184
AccI	GTMKAC	2 cut(s)	2957, 3671
AccII	CGCG	4 cut(s)	258, 899, 1185, 3775
AccIII	TCCGGA	1 cut(s)	317
AclI	AACGTT	2 cut(s)	2679, 3393
AcoI	YGGCCR	1 cut(s)	1008
AcsI	RAATTY	5 cut(s)	1652, 1878, 3278, 3559, 4094
AcuI	CTGAAG	5 cut(s)	723, 827, 1331, 3516, 4058
AfeI	AGCGCT	1 cut(s)	3349
AfiI	CCNNNNNNNGG	8 cut(s)	500, 582, 1480, 1576, 2356, 2507, 3539, 3713
AflIII	ACRYGT	1 cut(s)	897
AhlI	ACTAGT	1 cut(s)	4021
AjnI	CCWGG	6 cut(s)	403, 968, 1194, 1804, 3002, 3334
AleI	CACNNNNGTG	1 cut(s)	1062
AloI	GAACNNNNNNTCC	2 cut(s)	491, 523
Alw21I	GWGCWC	4 cut(s)	1413, 2140, 2845, 3688
Alw26I	GTCTC	4 cut(s)	826, 3025, 3849, 4266
Alw44I	GTGCAC	1 cut(s)	2841
AlwNI	CAGNNNCTG	1 cut(s)	2824
Aor13HI	TCCGGA	1 cut(s)	317
Aor51HI	AGCGCT	1 cut(s)	3349
AoxI	GGCC	8 cut(s)	1008, 1147, 1192, 1770, 2358, 2439, 3530, 3578
ApaLI	GTGCAC	1 cut(s)	2841
ApoI	RAATTY	5 cut(s)	1652, 1878, 3278, 3559, 4094
Asp700I	GAANNNNTTC	1 cut(s)	2594
AspLEI	GCGC	4 cut(s)	332, 1187, 3290, 3350
AspS9I	GGNCC	4 cut(s)	2041, 2440, 3531, 3579
AsuII	TTCGAA	1 cut(s)	1766
AvaII	GGWCC	1 cut(s)	2041
AxyI	CCTNAGG	1 cut(s)	1599
BaeGI	GKGCMC	2 cut(s)	2845, 4000
BamHI	GGATCC	2 cut(s)	1579, 3835
BanI	GGYRCC	1 cut(s)	1663
BarI	GAAGNNNNNNTAC	2 cut(s)	624, 656
BbsI	GAAGAC	3 cut(s)	1922, 2255, 2480
Bbv12I	GWGCWC	4 cut(s)	1413, 2140, 2845, 3688
BceAI	ACGGC	7 cut(s)	265, 529, 529, 965, 1935, 2548, 3287
BciT130I	CCWGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
BciVI	GTATCC	4 cut(s)	1723, 1987, 2874, 4125
BclI	TGATCA	2 cut(s)	532, 4113
BcoDI	GTCTC	4 cut(s)	826, 3025, 3849, 4266
BcuI	ACTAGT	1 cut(s)	4021
BfaI	CTAG	8 cut(s)	626, 1317, 2552, 2939, 3225, 3275, 3461, 4022
BfmI	CTRYAG	6 cut(s)	1425, 1673, 3053, 3306, 3537, 4275
BfoI	RGCGCY	1 cut(s)	3351
BfuI	GTATCC	4 cut(s)	1723, 1987, 2874, 4125
BglI	GCCNNNNNGGC	1 cut(s)	2438
BglII	AGATCT	2 cut(s)	2765, 2917
BmcAI	AGTACT	4 cut(s)	169, 689, 744, 2988
Bme1390I	CCNGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
Bme18I	GGWCC	1 cut(s)	2041
BmgT120I	GGNCC	4 cut(s)	2041, 2440, 3531, 3579
BmiI	GGNNCC	5 cut(s)	1127, 1524, 1581, 1665, 3837
BmrFI	CCNGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
BpiI	GAAGAC	3 cut(s)	1922, 2255, 2480
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpmI	CTGGAG	4 cut(s)	1136, 1233, 3979, 4253
Bpu10I	CCTNAGC	1 cut(s)	1840
Bpu14I	TTCGAA	1 cut(s)	1766
BpuEI	CTTGAG	7 cut(s)	1502, 1679, 2039, 2066, 2347, 2813, 3777
BsaBI	GATNNNNATC	2 cut(s)	2160, 3092
BsaI	GGTCTC	1 cut(s)	4266
BsaJI	CCNNGG	6 cut(s)	112, 256, 272, 403, 864, 1323
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	8 cut(s)	500, 582, 1480, 1576, 2356, 2507, 3539, 3713
Bse118I	RCCGGY	1 cut(s)	1145
Bse21I	CCTNAGG	1 cut(s)	1599
Bse3DI	GCAATG	3 cut(s)	959, 1249, 2702
Bse8I	GATNNNNATC	2 cut(s)	2160, 3092
BseAI	TCCGGA	1 cut(s)	317
BseBI	CCWGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
BseDI	CCNNGG	6 cut(s)	112, 256, 272, 403, 864, 1323
BseGI	GGATG	6 cut(s)	252, 297, 1099, 2176, 2673, 3369
BseJI	GATNNNNATC	2 cut(s)	2160, 3092
BseLI	CCNNNNNNNGG	8 cut(s)	500, 582, 1480, 1576, 2356, 2507, 3539, 3713
BseMI	GCAATG	3 cut(s)	959, 1249, 2702
BseRI	GAGGAG	2 cut(s)	178, 1421
BseSI	GKGCMC	2 cut(s)	2845, 4000
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	3 cut(s)	1451, 3445, 4090
Bsh1236I	CGCG	4 cut(s)	258, 899, 1185, 3775
Bsh1285I	CGRYCG	1 cut(s)	1146
BshFI	GGCC	8 cut(s)	1010, 1149, 1194, 1772, 2360, 2441, 3532, 3580
BshNI	GGYRCC	1 cut(s)	1663
BsiEI	CGRYCG	1 cut(s)	1146
BsiHKAI	GWGCWC	4 cut(s)	1413, 2140, 2845, 3688
BsiSI	CCGG	2 cut(s)	318, 1146
BslFI	GGGAC	4 cut(s)	1456, 1969, 3097, 3981
BslI	CCNNNNNNNGG	8 cut(s)	500, 582, 1480, 1576, 2356, 2507, 3539, 3713
BsmAI	GTCTC	4 cut(s)	826, 3025, 3849, 4266
BsmBI	CGTCTC	1 cut(s)	826
BsmFI	GGGAC	4 cut(s)	1456, 1969, 3097, 3981
BsmI	GAATGC	3 cut(s)	1045, 2155, 2395
BsnI	GGCC	8 cut(s)	1010, 1149, 1194, 1772, 2360, 2441, 3532, 3580
Bso31I	GGTCTC	1 cut(s)	4266
Bsp119I	TTCGAA	1 cut(s)	1766
Bsp1286I	GDGCHC	5 cut(s)	1413, 2140, 2845, 3688, 4000
Bsp13I	TCCGGA	1 cut(s)	317
BspANI	GGCC	8 cut(s)	1010, 1149, 1194, 1772, 2360, 2441, 3532, 3580
BspEI	TCCGGA	1 cut(s)	317
BspFNI	CGCG	4 cut(s)	258, 899, 1185, 3775
BspLI	GGNNCC	5 cut(s)	1127, 1524, 1581, 1665, 3837
BspMAI	CTGCAG	4 cut(s)	1429, 1677, 3310, 4279
BspQI	GCTCTTC	1 cut(s)	3174
BspT104I	TTCGAA	1 cut(s)	1766
BspT107I	GGYRCC	1 cut(s)	1663
BspTNI	GGTCTC	1 cut(s)	4266
BsrBI	CCGCTC	3 cut(s)	697, 2103, 3184
BsrDI	GCAATG	3 cut(s)	959, 1249, 2702
BsrFI	RCCGGY	1 cut(s)	1145
BssAI	RCCGGY	1 cut(s)	1145
BssECI	CCNNGG	6 cut(s)	112, 256, 272, 403, 864, 1323
BssT1I	CCWWGG	2 cut(s)	112, 272
Bst2UI	CCWGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
Bst6I	CTCTTC	7 cut(s)	147, 627, 1688, 2526, 3174, 3812, 4213
BstAPI	GCANNNNNTGC	1 cut(s)	2201
BstBI	TTCGAA	1 cut(s)	1766
BstC8I	GCNNGC	7 cut(s)	1533, 2289, 2424, 3534, 3708, 3996, 4229
BstDSI	CCRYGG	1 cut(s)	256
BstEII	GGTNACC	1 cut(s)	2510
BstENI	CCTNNNNNAGG	1 cut(s)	1574
BstF5I	GGATG	6 cut(s)	252, 297, 1099, 2176, 2673, 3369
BstFNI	CGCG	4 cut(s)	258, 899, 1185, 3775
BstH2I	RGCGCY	1 cut(s)	3351
BstHHI	GCGC	4 cut(s)	332, 1187, 3290, 3350
BstMAI	GTCTC	4 cut(s)	826, 3025, 3849, 4266
BstMCI	CGRYCG	1 cut(s)	1146
BstNI	CCWGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
BstNSI	RCATGY	3 cut(s)	19, 1509, 1535
BstPI	GGTNACC	1 cut(s)	2510
BstSCI	CCNGG	6 cut(s)	403, 968, 1194, 1804, 3002, 3334
BstSFI	CTRYAG	6 cut(s)	1425, 1673, 3053, 3306, 3537, 4275
BstSLI	GKGCMC	2 cut(s)	2845, 4000
BstUI	CGCG	4 cut(s)	258, 899, 1185, 3775
BstV2I	GAAGAC	3 cut(s)	1922, 2255, 2480
BstX2I	RGATCY	7 cut(s)	1579, 2380, 2765, 2917, 3417, 3796, 3835
BstXI	CCANNNNNNTGG	1 cut(s)	3528
BstYI	RGATCY	7 cut(s)	1579, 2380, 2765, 2917, 3417, 3796, 3835
Bsu36I	CCTNAGG	1 cut(s)	1599
BsuI	GTATCC	4 cut(s)	1723, 1987, 2874, 4125
BsuRI	GGCC	8 cut(s)	1010, 1149, 1194, 1772, 2360, 2441, 3532, 3580
BtgI	CCRYGG	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	6 cut(s)	252, 297, 1099, 2176, 2673, 3369
BtsI	GCAGTG	3 cut(s)	1434, 2433, 3667
Cac8I	GCNNGC	7 cut(s)	1533, 2289, 2424, 3534, 3708, 3996, 4229
CaiI	CAGNNNCTG	1 cut(s)	2824
CfoI	GCGC	4 cut(s)	332, 1187, 3290, 3350
Cfr10I	RCCGGY	1 cut(s)	1145
Cfr13I	GGNCC	4 cut(s)	2041, 2440, 3531, 3579
Cfr42I	CCGCGG	1 cut(s)	259
CsiI	ACCWGGT	1 cut(s)	1804
CspCI	CAANNNNNGTGG	2 cut(s)	1118, 1153
EaeI	YGGCCR	1 cut(s)	1008
Eam1104I	CTCTTC	7 cut(s)	147, 627, 1688, 2526, 3174, 3812, 4213
EarI	CTCTTC	7 cut(s)	147, 627, 1688, 2526, 3174, 3812, 4213
Eco130I	CCWWGG	2 cut(s)	112, 272
Eco31I	GGTCTC	1 cut(s)	4266
Eco32I	GATATC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	2041
Eco47III	AGCGCT	1 cut(s)	3349
Eco57I	CTGAAG	5 cut(s)	723, 827, 1331, 3516, 4058
Eco81I	CCTNAGG	1 cut(s)	1599
Eco91I	GGTNACC	1 cut(s)	2510
EcoNI	CCTNNNNNAGG	1 cut(s)	1574
EcoO109I	RGGNCCY	1 cut(s)	2041
EcoO65I	GGTNACC	1 cut(s)	2510
EcoRII	CCWGG	6 cut(s)	403, 968, 1194, 1804, 3002, 3334
EcoRV	GATATC	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	112, 272
EcoT22I	ATGCAT	1 cut(s)	1363
ErhI	CCWWGG	2 cut(s)	112, 272
Esp3I	CGTCTC	1 cut(s)	826
FaqI	GGGAC	4 cut(s)	1456, 1969, 3097, 3981
FauI	CCCGC	2 cut(s)	3541, 3703
FauNDI	CATATG	2 cut(s)	1924, 2479
FbaI	TGATCA	2 cut(s)	532, 4113
FblI	GTMKAC	2 cut(s)	2957, 3671
FokI	GGATG	6 cut(s)	239, 284, 1106, 2183, 2680, 3376
FspBI	CTAG	8 cut(s)	626, 1317, 2552, 2939, 3225, 3275, 3461, 4022
GlaI	GCGC	4 cut(s)	331, 1186, 3289, 3349
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	4 cut(s)	1136, 1233, 3979, 4253
HaeII	RGCGCY	1 cut(s)	3351
HaeIII	GGCC	8 cut(s)	1010, 1149, 1194, 1772, 2360, 2441, 3532, 3580
HapII	CCGG	2 cut(s)	318, 1146
HhaI	GCGC	4 cut(s)	332, 1187, 3290, 3350
Hin6I	GCGC	4 cut(s)	330, 1185, 3288, 3348
HinP1I	GCGC	4 cut(s)	330, 1185, 3288, 3348
HincII	GTYRAC	2 cut(s)	1053, 2683
HindII	GTYRAC	2 cut(s)	1053, 2683
HindIII	AAGCTT	3 cut(s)	266, 877, 1283
HpaII	CCGG	2 cut(s)	318, 1146
Hpy99I	CGWCG	1 cut(s)	37
HpyCH4IV	ACGT	4 cut(s)	1083, 1642, 2679, 3393
HpySE526I	ACGT	4 cut(s)	1083, 1642, 2679, 3393
HspAI	GCGC	4 cut(s)	330, 1185, 3288, 3348
Kpn2I	TCCGGA	1 cut(s)	317
Ksp22I	TGATCA	2 cut(s)	532, 4113
KspI	CCGCGG	1 cut(s)	259
LguI	GCTCTTC	1 cut(s)	3174
LmnI	GCTCC	8 cut(s)	407, 694, 1252, 1408, 2058, 2344, 3149, 3960
MabI	ACCWGGT	1 cut(s)	1804
MaeI	CTAG	8 cut(s)	626, 1317, 2552, 2939, 3225, 3275, 3461, 4022
MaeII	ACGT	4 cut(s)	1083, 1642, 2679, 3393
MaeIII	GTNAC	8 cut(s)	458, 538, 1084, 1260, 2263, 2510, 2998, 4172
MbiI	CCGCTC	3 cut(s)	697, 2103, 3184
MfeI	CAATTG	5 cut(s)	1025, 2516, 3526, 3977, 4047
MflI	RGATCY	7 cut(s)	1579, 2380, 2765, 2917, 3417, 3796, 3835
MhlI	GDGCHC	5 cut(s)	1413, 2140, 2845, 3688, 4000
MluI	ACGCGT	1 cut(s)	897
MlyI	GAGTC	7 cut(s)	147, 330, 515, 2653, 2855, 3146, 3923
MmeI	TCCRAC	3 cut(s)	534, 2149, 3545
Mph1103I	ATGCAT	1 cut(s)	1363
MroI	TCCGGA	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	2594
MseI	TTAA	9 cut(s)	12, 242, 843, 1397, 1731, 2469, 2523, 2559, 2774
MslI	CAYNNNNRTG	5 cut(s)	1062, 1343, 3029, 3362, 3855
MspA1I	CMGCKG	3 cut(s)	258, 3536, 3710
MspI	CCGG	2 cut(s)	318, 1146
MspR9I	CCNGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
MunI	CAATTG	5 cut(s)	1025, 2516, 3526, 3977, 4047
Mva1269I	GAATGC	3 cut(s)	1045, 2155, 2395
MvaI	CCWGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
MvnI	CGCG	4 cut(s)	258, 899, 1185, 3775
NdeI	CATATG	2 cut(s)	1924, 2479
NlaIV	GGNNCC	5 cut(s)	1127, 1524, 1581, 1665, 3837
NmeAIII	GCCGAG	1 cut(s)	889
NmuCI	GTSAC	4 cut(s)	458, 2263, 2510, 4172
NsiI	ATGCAT	1 cut(s)	1363
NspI	RCATGY	3 cut(s)	19, 1509, 1535
NspV	TTCGAA	1 cut(s)	1766
OliI	CACNNNNGTG	1 cut(s)	1062
PaeI	GCATGC	1 cut(s)	1535
PciSI	GCTCTTC	1 cut(s)	3174
PcsI	WCGNNNNNNNCGW	1 cut(s)	1208
PctI	GAATGC	3 cut(s)	1045, 2155, 2395
PdmI	GAANNNNTTC	1 cut(s)	2594
PflMI	CCANNNNNTGG	2 cut(s)	582, 2356
PfoI	TCCNGGA	1 cut(s)	3334
PleI	GAGTC	7 cut(s)	146, 329, 514, 2652, 2855, 3145, 3923
PpsI	GAGTC	7 cut(s)	146, 329, 514, 2652, 2855, 3145, 3923
PpuMI	RGGWCCY	1 cut(s)	2041
PsiI	TTATAA	1 cut(s)	3284
Psp1406I	AACGTT	2 cut(s)	2679, 3393
Psp5II	RGGWCCY	1 cut(s)	2041
Psp6I	CCWGG	6 cut(s)	403, 968, 1194, 1804, 3002, 3334
PspEI	GGTNACC	1 cut(s)	2510
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	6 cut(s)	403, 968, 1194, 1804, 3002, 3334
PspN4I	GGNNCC	5 cut(s)	1127, 1524, 1581, 1665, 3837
PspPI	GGNCC	4 cut(s)	2041, 2440, 3531, 3579
PspPPI	RGGWCCY	1 cut(s)	2041
PstI	CTGCAG	4 cut(s)	1429, 1677, 3310, 4279
PstNI	CAGNNNCTG	1 cut(s)	2824
PsuI	RGATCY	7 cut(s)	1579, 2380, 2765, 2917, 3417, 3796, 3835
RseI	CAYNNNNRTG	5 cut(s)	1062, 1343, 3029, 3362, 3855
SacII	CCGCGG	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	3174
SaqAI	TTAA	9 cut(s)	12, 242, 843, 1397, 1731, 2469, 2523, 2559, 2774
Sau96I	GGNCC	4 cut(s)	2041, 2440, 3531, 3579
ScaI	AGTACT	4 cut(s)	169, 689, 744, 2988
SchI	GAGTC	7 cut(s)	147, 330, 515, 2653, 2855, 3146, 3923
ScrFI	CCNGG	6 cut(s)	405, 970, 1196, 1806, 3004, 3336
SduI	GDGCHC	5 cut(s)	1413, 2140, 2845, 3688, 4000
SexAI	ACCWGGT	1 cut(s)	1804
SfcI	CTRYAG	6 cut(s)	1425, 1673, 3053, 3306, 3537, 4275
Sfr303I	CCGCGG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	1766
SgrBI	CCGCGG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	2041
SmiMI	CAYNNNNRTG	5 cut(s)	1062, 1343, 3029, 3362, 3855
SmlI	CTYRAG	7 cut(s)	1517, 1658, 2018, 2045, 2362, 2792, 3792
SmoI	CTYRAG	7 cut(s)	1517, 1658, 2018, 2045, 2362, 2792, 3792
SpeI	ACTAGT	1 cut(s)	4021
SphI	GCATGC	1 cut(s)	1535
SspI	AATATT	2 cut(s)	1900, 1972
SspMI	CTAG	8 cut(s)	626, 1317, 2552, 2939, 3225, 3275, 3461, 4022
StyD4I	CCNGG	6 cut(s)	403, 968, 1194, 1804, 3002, 3334
StyI	CCWWGG	2 cut(s)	112, 272
TaiI	ACGT	4 cut(s)	1086, 1645, 2682, 3396
TatI	WGTACW	7 cut(s)	123, 167, 687, 742, 2601, 2986, 3468
TauI	GCSGC	5 cut(s)	519, 2441, 2615, 3251, 3924
Tru1I	TTAA	9 cut(s)	12, 242, 843, 1397, 1731, 2469, 2523, 2559, 2774
Tru9I	TTAA	9 cut(s)	12, 242, 843, 1397, 1731, 2469, 2523, 2559, 2774
TseFI	GTSAC	4 cut(s)	458, 2263, 2510, 4172
Tsp45I	GTSAC	4 cut(s)	458, 2263, 2510, 4172
TspGWI	ACGGA	6 cut(s)	947, 1515, 2828, 2919, 3828, 4191
Van91I	CCANNNNNTGG	2 cut(s)	582, 2356
VneI	GTGCAC	1 cut(s)	2841
VpaK11BI	GGWCC	1 cut(s)	2041
XagI	CCTNNNNNAGG	1 cut(s)	1574
XapI	RAATTY	5 cut(s)	1652, 1878, 3278, 3559, 4094
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	3 cut(s)	19, 1509, 1535
XmiI	GTMKAC	2 cut(s)	2957, 3671
XmnI	GAANNNNTTC	1 cut(s)	2594
XspI	CTAG	8 cut(s)	626, 1317, 2552, 2939, 3225, 3275, 3461, 4022
ZrmI	AGTACT	4 cut(s)	169, 689, 744, 2988
Zsp2I	ATGCAT	1 cut(s)	1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.