Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Forward (+)

2547284 .. 2580791

Gene Structure 33508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4008 bp

ATGCTCTTGTTCACTATGTTTCACAAGTCATCATCATCCAAATCAGCTCACATTCCAGCTCGGTTTCGAGGCTTTTCCAGTTTGCAAATAGTGTCTGCCATAGTCAATGGCTGTCTTGGATTTGTGTACTTGTGCTTGGGAACCTGGATTTTAGTACAGAAGCTGAGGGATTCAGGATCTGCTTTGCCTTTGAATTGGTGGTTACTTACTTTGTTTCAAGGGATAACATGGCTGTTGGTGAGTTTGAGTCTGAGCATCAGGGGAAAACTACTTGCAAGGCAACCTTCGAGACTGTTGTCTATCCTTGCATTCCTGTTTTCTGGAATTGTCTGTGCTCTATCGCTCTTTGCAGCCATTTTTGGAAAAGAAATATCTGTGAAGATAGTTCTAGATATCCTATCTTTTCCAGGAGCAGCATTGTTGCTGTTATGTGTTTATAAGGGTTATATACATGAAGAGGGTGATGAGAGCCTCAATGGAAATGGCCTTTATACTCCTCTTTATGGTGAGTCCAATGTCACTGGTAAAGGTGAAGATCATGTTACTCCATTTGCCAAAGCTGGATTTTTCAGTAAAATGTCACTTTGGTGGCTGAATTCATTGATGAAAAAGGGCAGAGAGAAAACTCTTGAGGACGAAGACATACCAAAGTTGCGTGAGGAAGATCAAGCAGAAAGCTGTTATCTGCTGTTCTTGGAGCAACTGAGCAAGCAGAAAGAAATTGATCCGTCTTCCCAACCATCAGTGTTGAAGACGATAATCATATGCCACTGGAAGGAGATTTTACTATCTGGCTTCTTTGCTTTACTTAAGATAGTCACTCTCTCTGCTGGTCCTTTGCTTCTCAATGCCTTTATTTTGGTTGCTGAGGGAAATGAAAGTTTTAAATATGAAGGTTACATGTTGGCCATAACACTTTTCCTTTCAAAGACCATTGAATCTTTGTCACAAAGGCAGTGGTACTTAAGATGCAGGCTTATTGGTTTGAAAATTAGGTCTTTGCTATCAGCAGCCATTTACAAGAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCTGGTGGTGAAATCATGAATTATGTTACTGTGGATGCTTATAGGATTGGAGAATTCCCATTTTGGTTCCATCAGACTTGGACAACTAGCCTCCAGCTTTGTTTTGCTTTGGTAATTCTTTTCCGTGCAGTCGGCCTAGCCACATTTGCATCATTGGTGGTGATAGTTTTGACTGTTGTTTGTAATGCTCCACTTGCTAAGTTACAACATAGGTTTCAAAGTAAGCTTATGGTGGCACAAGATGAAAGACTCAAGGCATGTTCAGAAGCTCTTATAAACATGAAGGACCCCATTCGATCTATACCTGAGGTTATTGGGGTTGTCATTCAAGCCAAGGTTGCATTTGAGCGTATTGTGAAATTCCTTGAGGCACCAGAGCTGCACTCTTCAAATGTCAGGAAATGCAACATGAAGAATGTAGCACATTCCATTGTTATTAAGTCAGCTAGTTTTTCATGGGATAATTTATCAAAGGCCACACTGAGAAATATAAATTTAGAGGTTAGCCCTGGTCAGAAGGTGGCTATATGTGGAGAAGTTGGCTCAGGAAAATCAAGCCTCCTAGCTGCAATTCTCGGAGAAATTCCAAATGTTCAAGGAACTATTCAAGTTTTTGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGACAGGGACAATACAGGAGAATATTCTATTTGGTTCTGCTATGGATAGTGAAAGATACCGAGAAACGCTTGAGAGATGTTCGCTTGTAAAGGACCTTGAGTTACTGCCCTATGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAATCTAAGTGGAGGTCAGAAGCAGCGGATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGACATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCTACTAACCTATTTAATGAATACGTTATGGAAGCACTTTCAGGGAAGACAGTCTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCAGTCTTGTTGATGTTGGATGGGGAAATCCTTGAAGCAGCTCCTTATCATCAGTTATTGGCCTCAAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCAGATGTCCCTTCTGTCCAAACTTCTGGAACATCATCCAGAGAGATTAAGAAGGCTTATGTAGAGAAGAAATTGAAAGGAAATAAAGGTGACCAGTTGATTAAGATAGAGAGAGAGAGAATAGGAGACACTGGTTTGAGGCCATACAAACAGTATCTGAAACAGAACAAAGGGTTCTTGTACTTCTCAGCCGCTGTTCTTTTACACCTGACATTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCTCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCTGTCGATTGGATTTTCTGCAACATTTGTTTTGCTGTTCAGATCTCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTATTAAACTCTCTATTTCGTGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTAGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTTATCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACTAATTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGCGCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACCAGTGCACTATAGCAAATTACATAATTTCTGTTGAAAGACTAAATCAATACACACATGTACCTAGTGAAGCCCCTGAAGTTATAGAGGGAAACCGTCCCACCTCCCAACTGGCCTGTTGTAGGAAAAGTGGAAATACAAAATTTGCAGGTAAAACTGGTGTCTTTAGCATTGAATACCAATCGTTTATGTTGAAGAAGGTTACTGAGACTTATTTGATGTCAAAACAGATTAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATCAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTAATCGGTGCTCTATTTCGTCTGGTGGAGCCAGCCGGAGGGAAGATTATAGTCGATGGCATTGACATCTCTTCTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTCAATGGGACTGTGAGATACAATTTGGATCCATTATCTCAACATTCAGACCATGAGATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGGGAGGCTGTTCAAGAAAAAGAAGGCGGCTTAGACTCTTTAGTTGTGGAAGATGGATCAAACTGGAGCATGGGGCAAAGACAGTTGTTCTGTTTGGGCCGAGCTCTTTTGAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACAGCTTCCATCGACAATGCAACTGATATGATTTTACAGAAGACTATACGGACTGAATTTGCAGATTGTACAGTTATTACAGTAGCTCACAGGATACCGACTGTGATGGATTGCACAATGGTCCTTGCCATTAGTGACGGGAAAATAGTGGAGTATGATGAGCCAATTAACCTAATGAAAAGAGAAGGCTCACTATTCGGGCAGCTTGTCAAGGAATACTGGTCTCATCTCCAGTCTGCAGAATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1335

Amino Acids

147.95

Weight (kDa)

8.3

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	1 - 149	1.9e-61	ABCC10 N-terminal domain
ABC_membrane	PF00664	261 - 449	1.1e-15	ABC transporter transmembrane region
ABC_tran	PF00005	515 - 649	6.8e-23	ABC transporter
ABC_membrane	PF00664	790 - 954	1e-15	ABC transporter transmembrane region
ABC_tran	PF00005	1106 - 1254	1.3e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	438, 1337
Acc16I	TGCGCA	1 cut(s)	2926
Acc36I	ACCTGC	1 cut(s)	3194
AccB1I	GGYRCC	1 cut(s)	1432
AccI	GTMKAC	1 cut(s)	3389
AciI	CCGC	3 cut(s)	1885, 2382, 3639
AcoI	YGGCCR	2 cut(s)	906, 3367
AcsI	RAATTY	7 cut(s)	595, 1115, 1421, 1555, 1644, 3197, 3812
AcuI	CTGAAG	1 cut(s)	3153
AfaI	GTAC	7 cut(s)	128, 156, 962, 2372, 2757, 3117, 3826
AfiI	CCNNNNNNNGG	4 cut(s)	503, 775, 3177, 3431
AflII	CTTAAG	2 cut(s)	809, 964
AflIII	ACRYGT	3 cut(s)	900, 3030, 3112
AjnI	CCWGG	3 cut(s)	143, 406, 1570
AleI	CACNNNNGTG	2 cut(s)	586, 1065
Alw21I	GWGCWC	6 cut(s)	337, 1906, 2614, 3065, 3406, 3718
Alw26I	GTCTC	4 cut(s)	283, 2310, 3257, 3984
Alw44I	GTGCAC	2 cut(s)	2610, 3061
AlwNI	CAGNNNCTG	4 cut(s)	163, 179, 2347, 2384
AoxI	GGCC	9 cut(s)	484, 906, 1195, 1536, 2124, 2330, 3168, 3367, 3709
ApaLI	GTGCAC	2 cut(s)	2610, 3061
ApoI	RAATTY	7 cut(s)	595, 1115, 1421, 1555, 1644, 3197, 3812
AspLEI	GCGC	2 cut(s)	2927, 3007
AspS9I	GGNCC	6 cut(s)	833, 1348, 1807, 2146, 3709, 3877
AsuHPI	GGTGA	8 cut(s)	250, 473, 518, 542, 1082, 1234, 1841, 2291
AvaII	GGWCC	5 cut(s)	833, 1348, 1807, 2146, 3877
AxyI	CCTNAGG	1 cut(s)	1368
BaeGI	GKGCMC	2 cut(s)	2614, 3065
BaeI	ACNNNNGTAYC	2 cut(s)	3099, 3132
BalI	TGGCCA	1 cut(s)	908
BamHI	GGATCC	2 cut(s)	1710, 3553
BanI	GGYRCC	1 cut(s)	1432
BanII	GRGCYC	1 cut(s)	3718
BauI	CACGAG	1 cut(s)	1899
BbsI	GAAGAC	5 cut(s)	645, 723, 758, 2021, 3803
Bbv12I	GWGCWC	6 cut(s)	337, 1906, 2614, 3065, 3406, 3718
BbvCI	CCTCAGC	2 cut(s)	164, 867
BccI	CCATC	9 cut(s)	748, 1140, 2043, 2078, 2431, 3443, 3659, 3773, 3856
BciT130I	CCWGG	3 cut(s)	145, 408, 1572
BciVI	GTATCC	2 cut(s)	2643, 3843
BcoDI	GTCTC	4 cut(s)	283, 2310, 3257, 3984
BfaI	CTAG	7 cut(s)	389, 1149, 1199, 1509, 1625, 2759, 3120
BfmI	CTRYAG	5 cut(s)	2822, 2943, 3066, 3468, 3993
BfoI	RGCGCY	1 cut(s)	3008
BfrI	CTTAAG	2 cut(s)	809, 964
BfuAI	ACCTGC	1 cut(s)	3194
BfuI	GTATCC	2 cut(s)	2643, 3843
BglI	GCCNNNNNGGC	1 cut(s)	3375
BglII	AGATCT	2 cut(s)	2534, 2686
BmcAI	AGTACT	1 cut(s)	2757
Bme1390I	CCNGG	3 cut(s)	145, 408, 1572
Bme18I	GGWCC	5 cut(s)	833, 1348, 1807, 2146, 3877
BmgT120I	GGNCC	6 cut(s)	833, 1348, 1807, 2146, 3709, 3877
BmiI	GGNNCC	7 cut(s)	142, 1130, 1350, 1434, 1712, 3423, 3555
BmrFI	CCNGG	3 cut(s)	145, 408, 1572
BmsI	GCATC	6 cut(s)	264, 959, 1087, 1220, 1948, 2576
BoxI	GACNNNNGTC	1 cut(s)	295
BpiI	GAAGAC	5 cut(s)	645, 723, 758, 2021, 3803
BplI	GAGNNNNNCTC	2 cut(s)	1430, 1462
BpmI	CTGGAG	3 cut(s)	1139, 3697, 3971
Bpu10I	CCTNAGC	3 cut(s)	164, 867, 1606
BpuEI	CTTGAG	8 cut(s)	650, 1298, 1448, 1805, 1832, 2113, 2582, 3495
BsaBI	GATNNNNATC	1 cut(s)	2861
BsaI	GGTCTC	1 cut(s)	3984
BsaJI	CCNNGG	2 cut(s)	1395, 1570
Bsc4I	CCNNNNNNNGG	4 cut(s)	503, 775, 3177, 3431
Bse21I	CCTNAGG	1 cut(s)	1368
Bse3DI	GCAATG	1 cut(s)	2471
Bse8I	GATNNNNATC	1 cut(s)	2861
BseBI	CCWGG	3 cut(s)	145, 408, 1572
BseDI	CCNNGG	2 cut(s)	1395, 1570
BseGI	GGATG	7 cut(s)	35, 1102, 1942, 2089, 2225, 2442, 3304
BseJI	GATNNNNATC	1 cut(s)	2861
BseLI	CCNNNNNNNGG	4 cut(s)	503, 775, 3177, 3431
BseMI	GCAATG	1 cut(s)	2471
BseRI	GAGGAG	2 cut(s)	486, 3739
BseSI	GKGCMC	2 cut(s)	2614, 3065
BsgI	GTGCAG	2 cut(s)	1209, 1427
BshFI	GGCC	9 cut(s)	486, 908, 1197, 1538, 2126, 2332, 3170, 3369, 3711
BshNI	GGYRCC	1 cut(s)	1432
BsiHKAI	GWGCWC	6 cut(s)	337, 1906, 2614, 3065, 3406, 3718
BsiSI	CCGG	2 cut(s)	3370, 3429
BslFI	GGGAC	4 cut(s)	1735, 2183, 3138, 3547
BslI	CCNNNNNNNGG	4 cut(s)	503, 775, 3177, 3431
BsmAI	GTCTC	4 cut(s)	283, 2310, 3257, 3984
BsmFI	GGGAC	4 cut(s)	1735, 2183, 3138, 3547
BsmI	GAATGC	2 cut(s)	308, 1921
BsnI	GGCC	9 cut(s)	486, 908, 1197, 1538, 2126, 2332, 3170, 3369, 3711
Bso31I	GGTCTC	1 cut(s)	3984
Bsp1286I	GDGCHC	6 cut(s)	337, 1906, 2614, 3065, 3406, 3718
Bsp1407I	TGTACA	1 cut(s)	3824
BspACI	CCGC	3 cut(s)	1885, 2382, 3639
BspANI	GGCC	9 cut(s)	486, 908, 1197, 1538, 2126, 2332, 3170, 3369, 3711
BspHI	TCATGA	2 cut(s)	1077, 3478
BspLI	GGNNCC	7 cut(s)	142, 1130, 1350, 1434, 1712, 3423, 3555
BspMAI	CTGCAG	2 cut(s)	2947, 3997
BspMI	ACCTGC	1 cut(s)	3194
BspT107I	GGYRCC	1 cut(s)	1432
BspTI	CTTAAG	2 cut(s)	809, 964
BspTNI	GGTCTC	1 cut(s)	3984
BsrDI	GCAATG	1 cut(s)	2471
BsrGI	TGTACA	1 cut(s)	3824
BssECI	CCNNGG	2 cut(s)	1395, 1570
BssSI	CACGAG	1 cut(s)	1899
BssT1I	CCWWGG	1 cut(s)	1395
Bst2BI	CACGAG	1 cut(s)	1899
Bst2UI	CCWGG	3 cut(s)	145, 408, 1572
Bst6I	CTCTTC	4 cut(s)	450, 1453, 3469, 3530
BstAFI	CTTAAG	2 cut(s)	809, 964
BstAPI	GCANNNNNTGC	1 cut(s)	1967
BstAUI	TGTACA	1 cut(s)	3824
BstC8I	GCNNGC	5 cut(s)	710, 974, 2055, 2190, 3426
BstEII	GGTNACC	1 cut(s)	2279
BstENI	CCTNNNNNAGG	1 cut(s)	3175
BstF5I	GGATG	7 cut(s)	35, 1102, 1942, 2089, 2225, 2442, 3304
BstH2I	RGCGCY	1 cut(s)	3008
BstHHI	GCGC	2 cut(s)	2927, 3007
BstMAI	GTCTC	4 cut(s)	283, 2310, 3257, 3984
BstMWI	GCNNNNNNNGC	9 cut(s)	1208, 1256, 1400, 1958, 1967, 2723, 2936, 2945, 3375
BstNI	CCWGG	3 cut(s)	145, 408, 1572
BstNSI	RCATGY	4 cut(s)	904, 1323, 3034, 3116
BstPAI	GACNNNNGTC	1 cut(s)	295
BstPI	GGTNACC	1 cut(s)	2279
BstSCI	CCNGG	3 cut(s)	143, 406, 1570
BstSFI	CTRYAG	5 cut(s)	2822, 2943, 3066, 3468, 3993
BstSLI	GKGCMC	2 cut(s)	2614, 3065
BstV2I	GAAGAC	5 cut(s)	645, 723, 758, 2021, 3803
BstX2I	RGATCY	5 cut(s)	176, 1710, 2534, 2686, 3553
BstXI	CCANNNNNNTGG	2 cut(s)	2216, 2800
BstYI	RGATCY	5 cut(s)	176, 1710, 2534, 2686, 3553
Bsu36I	CCTNAGG	1 cut(s)	1368
BsuI	GTATCC	2 cut(s)	2643, 3843
BsuRI	GGCC	9 cut(s)	486, 908, 1197, 1538, 2126, 2332, 3170, 3369, 3711
BtsCI	GGATG	7 cut(s)	35, 1102, 1942, 2089, 2225, 2442, 3304
BtsI	GCAGTG	3 cut(s)	962, 2841, 3385
BveI	ACCTGC	1 cut(s)	3194
Cac8I	GCNNGC	5 cut(s)	710, 974, 2055, 2190, 3426
CaiI	CAGNNNCTG	4 cut(s)	163, 179, 2347, 2384
CciI	TCATGA	2 cut(s)	1077, 3478
CfoI	GCGC	2 cut(s)	2927, 3007
Cfr13I	GGNCC	6 cut(s)	833, 1348, 1807, 2146, 3709, 3877
Csp6I	GTAC	7 cut(s)	127, 155, 961, 2371, 2756, 3116, 3825
CspCI	CAANNNNNGTGG	4 cut(s)	938, 973, 1849, 1884
CviQI	GTAC	7 cut(s)	127, 155, 961, 2371, 2756, 3116, 3825
DraI	TTTAAA	1 cut(s)	886
EaeI	YGGCCR	2 cut(s)	906, 3367
Eam1104I	CTCTTC	4 cut(s)	450, 1453, 3469, 3530
EarI	CTCTTC	4 cut(s)	450, 1453, 3469, 3530
Ecl136II	GAGCTC	1 cut(s)	3716
Eco130I	CCWWGG	1 cut(s)	1395
Eco24I	GRGCYC	1 cut(s)	3718
Eco31I	GGTCTC	1 cut(s)	3984
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	5 cut(s)	833, 1348, 1807, 2146, 3877
Eco53kI	GAGCTC	1 cut(s)	3716
Eco57I	CTGAAG	1 cut(s)	3153
Eco81I	CCTNAGG	1 cut(s)	1368
Eco91I	GGTNACC	1 cut(s)	2279
EcoICRI	GAGCTC	1 cut(s)	3716
EcoNI	CCTNNNNNAGG	1 cut(s)	3175
EcoO109I	RGGNCCY	3 cut(s)	1348, 1807, 2146
EcoO65I	GGTNACC	1 cut(s)	2279
EcoRI	GAATTC	2 cut(s)	595, 1115
EcoRII	CCWGG	3 cut(s)	143, 406, 1570
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	1395
EcoT38I	GRGCYC	1 cut(s)	3718
ErhI	CCWWGG	1 cut(s)	1395
FalI	AAGNNNNNCTT	4 cut(s)	268, 300, 2006, 2038
FaqI	GGGAC	4 cut(s)	1735, 2183, 3138, 3547
FauNDI	CATATG	1 cut(s)	764
FblI	GTMKAC	1 cut(s)	3389
FokI	GGATG	7 cut(s)	22, 1109, 1949, 2096, 2212, 2449, 3311
FriOI	GRGCYC	1 cut(s)	3718
FspBI	CTAG	7 cut(s)	389, 1149, 1199, 1509, 1625, 2759, 3120
FspI	TGCGCA	1 cut(s)	2926
GlaI	GCGC	2 cut(s)	2926, 3006
GsuI	CTGGAG	3 cut(s)	1139, 3697, 3971
HaeII	RGCGCY	1 cut(s)	3008
HaeIII	GGCC	9 cut(s)	486, 908, 1197, 1538, 2126, 2332, 3170, 3369, 3711
HapII	CCGG	2 cut(s)	3370, 3429
HhaI	GCGC	2 cut(s)	2927, 3007
Hin6I	GCGC	2 cut(s)	2925, 3005
HinP1I	GCGC	2 cut(s)	2925, 3005
HincII	GTYRAC	2 cut(s)	1056, 2544
HindII	GTYRAC	2 cut(s)	1056, 2544
HindIII	AAGCTT	1 cut(s)	1286
HpaI	GTTAAC	1 cut(s)	2544
HpaII	CCGG	2 cut(s)	3370, 3429
HphI	GGTGA	8 cut(s)	250, 473, 518, 542, 1082, 1234, 1841, 2291
Hpy166II	GTNNAC	8 cut(s)	12, 127, 1056, 2491, 2544, 2612, 3063, 3390
Hpy8I	GTNNAC	8 cut(s)	12, 127, 1056, 2491, 2544, 2612, 3063, 3390
HpyCH4IV	ACGT	1 cut(s)	1992
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1208, 1256, 1400, 1958, 1967, 2723, 2936, 2945, 3375
HpySE526I	ACGT	1 cut(s)	1992
HspAI	GCGC	2 cut(s)	2925, 3005
KspAI	GTTAAC	1 cut(s)	2544
LmnI	GCTCC	7 cut(s)	410, 697, 1255, 2110, 2723, 3421, 3678
LweI	GCATC	6 cut(s)	264, 959, 1087, 1220, 1948, 2576
MaeI	CTAG	7 cut(s)	389, 1149, 1199, 1509, 1625, 2759, 3120
MaeII	ACGT	1 cut(s)	1992
MfeI	CAATTG	2 cut(s)	1028, 2477
MflI	RGATCY	5 cut(s)	176, 1710, 2534, 2686, 3553
MhlI	GDGCHC	6 cut(s)	337, 1906, 2614, 3065, 3406, 3718
MlsI	TGGCCA	1 cut(s)	908
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	5 cut(s)	256, 518, 1305, 2624, 3641
MmeI	TCCRAC	2 cut(s)	2061, 2993
Mox20I	TGGCCA	1 cut(s)	908
MscI	TGGCCA	1 cut(s)	908
MslI	CAYNNNNRTG	3 cut(s)	586, 1065, 2798
Msp20I	TGGCCA	1 cut(s)	908
MspA1I	CMGCKG	2 cut(s)	1885, 2384
MspCI	CTTAAG	2 cut(s)	809, 964
MspI	CCGG	2 cut(s)	3370, 3429
MspR9I	CCNGG	3 cut(s)	145, 408, 1572
MunI	CAATTG	2 cut(s)	1028, 2477
Mva1269I	GAATGC	2 cut(s)	308, 1921
MvaI	CCWGG	3 cut(s)	145, 408, 1572
MwoI	GCNNNNNNNGC	9 cut(s)	1208, 1256, 1400, 1958, 1967, 2723, 2936, 2945, 3375
NdeI	CATATG	1 cut(s)	764
NlaIV	GGNNCC	7 cut(s)	142, 1130, 1350, 1434, 1712, 3423, 3555
NmeAIII	GCCGAG	1 cut(s)	3737
NmuCI	GTSAC	7 cut(s)	517, 579, 817, 945, 2029, 2279, 3890
NsbI	TGCGCA	1 cut(s)	2926
NspI	RCATGY	4 cut(s)	904, 1323, 3034, 3116
OliI	CACNNNNGTG	2 cut(s)	586, 1065
PagI	TCATGA	2 cut(s)	1077, 3478
PciI	ACATGT	3 cut(s)	900, 3030, 3112
PctI	GAATGC	2 cut(s)	308, 1921
PfeI	GAWTC	6 cut(s)	170, 938, 1888, 2063, 2902, 3998
PflFI	GACNNNGTC	1 cut(s)	2150
PfoI	TCCNGGA	1 cut(s)	406
PleI	GAGTC	5 cut(s)	255, 517, 1305, 2624, 3641
PpsI	GAGTC	5 cut(s)	255, 517, 1305, 2624, 3641
PpuMI	RGGWCCY	3 cut(s)	1348, 1807, 2146
PscI	ACATGT	3 cut(s)	900, 3030, 3112
PshAI	GACNNNNGTC	1 cut(s)	295
PsiI	TTATAA	2 cut(s)	438, 1337
Psp124BI	GAGCTC	1 cut(s)	3718
Psp5II	RGGWCCY	3 cut(s)	1348, 1807, 2146
Psp6I	CCWGG	3 cut(s)	143, 406, 1570
PspEI	GGTNACC	1 cut(s)	2279
PspGI	CCWGG	3 cut(s)	143, 406, 1570
PspN4I	GGNNCC	7 cut(s)	142, 1130, 1350, 1434, 1712, 3423, 3555
PspPI	GGNCC	6 cut(s)	833, 1348, 1807, 2146, 3709, 3877
PspPPI	RGGWCCY	3 cut(s)	1348, 1807, 2146
PstI	CTGCAG	2 cut(s)	2947, 3997
PstNI	CAGNNNCTG	4 cut(s)	163, 179, 2347, 2384
PsuI	RGATCY	5 cut(s)	176, 1710, 2534, 2686, 3553
PsyI	GACNNNGTC	1 cut(s)	2150
RsaI	GTAC	7 cut(s)	128, 156, 962, 2372, 2757, 3117, 3826
RsaNI	GTAC	7 cut(s)	127, 155, 961, 2371, 2756, 3116, 3825
RseI	CAYNNNNRTG	3 cut(s)	586, 1065, 2798
SacI	GAGCTC	1 cut(s)	3718
Sau96I	GGNCC	6 cut(s)	833, 1348, 1807, 2146, 3709, 3877
ScaI	AGTACT	1 cut(s)	2757
SchI	GAGTC	5 cut(s)	256, 518, 1305, 2624, 3641
ScrFI	CCNGG	3 cut(s)	145, 408, 1572
SduI	GDGCHC	6 cut(s)	337, 1906, 2614, 3065, 3406, 3718
SfaNI	GCATC	6 cut(s)	264, 959, 1087, 1220, 1948, 2576
SfcI	CTRYAG	5 cut(s)	2822, 2943, 3066, 3468, 3993
SinI	GGWCC	5 cut(s)	833, 1348, 1807, 2146, 3877
SmiMI	CAYNNNNRTG	3 cut(s)	586, 1065, 2798
SsiI	CCGC	3 cut(s)	1885, 2382, 3639
SspI	AATATT	2 cut(s)	1738, 2831
SspMI	CTAG	7 cut(s)	389, 1149, 1199, 1509, 1625, 2759, 3120
SstI	GAGCTC	1 cut(s)	3718
StyD4I	CCNGG	3 cut(s)	143, 406, 1570
StyI	CCWWGG	1 cut(s)	1395
TaiI	ACGT	1 cut(s)	1995
TaqI	TCGA	7 cut(s)	67, 287, 1357, 2498, 3319, 3447, 3768
TatI	WGTACW	5 cut(s)	126, 154, 2370, 2755, 3824
TauI	GCSGC	2 cut(s)	2384, 3642
TfiI	GAWTC	6 cut(s)	170, 938, 1888, 2063, 2902, 3998
TseFI	GTSAC	7 cut(s)	517, 579, 817, 945, 2029, 2279, 3890
Tsp45I	GTSAC	7 cut(s)	517, 579, 817, 945, 2029, 2279, 3890
TspGWI	ACGGA	3 cut(s)	717, 1175, 3820
Tth111I	GACNNNGTC	1 cut(s)	2150
Vha464I	CTTAAG	2 cut(s)	809, 964
VneI	GTGCAC	2 cut(s)	2610, 3061
VpaK11BI	GGWCC	5 cut(s)	833, 1348, 1807, 2146, 3877
XagI	CCTNNNNNAGG	1 cut(s)	3175
XapI	RAATTY	7 cut(s)	595, 1115, 1421, 1555, 1644, 3197, 3812
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	4 cut(s)	904, 1323, 3034, 3116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3163
XmiI	GTMKAC	1 cut(s)	3389
XspI	CTAG	7 cut(s)	389, 1149, 1199, 1509, 1625, 2759, 3120
ZrmI	AGTACT	1 cut(s)	2757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.