Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

65826475 .. 65832615

Gene Structure 6141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4368 bp

ATGATGGAGGACTTATGGAGTGGATTTTGTGGGGAATCTGGAGGTTCTGAGGGTTTGAGTTTTCGGTTTCTGGTTCATCCTTCTTCATGCATTAATCACGCTTTGATAATTTTCCTAGACATAGTTCTTCTTGTGGTGCTCTTGTTCAGTATGTTTATCAAGTCATCAAAAAGAGTTCATGTTCCAGCACGGTTTCTAGGCTTTTCGAGTTGGCAAATAGTCTCGGCCATTTTCAATGGCGGTCTTGGATTTGTGTACTTGTGCTTGGGAGCCTGGAATTTAGAAGAGAAGCTGAGGAACACACATACAGCTTTGCCTTTGAATTGGTGGTTACTTGGTCTTTTTCAAGGCTTCACATGGTTGGTTTTGAGCTTAACTCTAAGCATCAGGGTGCAGCAACTTCCAAGACAACCTTCAAGACTGTTGTGCATCCTTGCTTTTTTGTTCTCTGGAGTTGTCTTTGCTCTATCGCTCTTCGCTGTCATTTTCAGAAATGAAATGTCATTTAAGATAGTACTAGATATCCTGACTTTCCCAGGAGCAGCATTGTTGCTGTTATGTGTTTTCAAGGGGTATAAGTATGAAGATGGTGATGAGATCAGTGACAATGGCCTTTATGCCCCTCTCAATGGTGAGTCCAATGGTATTAGTAAAGGTAATGATCATGCAACACCATTTAGCAAAGCTGGATTGTTAAGTAAAATGTCATTTTGGTGGTTAAATTCATTGATGAAAAGAGGTAGGGAGAAAACTCTGGAGGATGAAGATATACCGAAGTTGCGCAAGGAAGATAGAGCAGAAAGTTGCTATTCGATGTTCTTGGAGCAACTGAGCAAGCAGAAACAAATTGAGCCATCTTCCCAGCCATTAGTATTAAAGACTATAATCCTATGCCACTGGAAGGAGATTTTACTATCTGGTTTCTTTGCTTTGCTGAAGATACTCACTATTTGTGCTGGTCCTTTGCTTCTCAATGCCTTCATTTTGGTTGCGGAGGGAAATGAAAGTTTCGAGCACGAAGGTTATCTGTTAGCCGGAGCACTTTTTCTGTCGAAAACCATTGAATCCTTGTCACAAAGGCAGTGGTACTTCAGGTGCAGGCTTATTGGTTTGAAAGTTAGGTCTTTGCTGACAGCAGCCATTTACAAAAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCAGGTGGTGAGATCATGAATTATGTTACTGTGGATGCTTATAGGATTGGAGAGTTTCCATTTTGGTTCCATCAGACTTGGACTACTAGCGTCCAGCTTTGTTTTTCTTTGGTAATTCTTTTCCGTGCAGTCGGCCTAGCTACATTTGCAGCCTTGGTGGTGATACTTTTGAGTGTGATTTGCAATGCTCCAGTTGCTAAGCTACAACATAAGTTCCAGAGTAAGCTTATGAAGGCACAAGATGAAAGGCTCAAGGCTATTTCTGAGGCTCTAGTGAACATGAAGGTCTTAAAGTTATATGCATGGGAAACACATTTCAAGAAGGCAATAGAAAAGTTAAGGAAGGAGGAGCACAAATGGTTATCTGCAATGCTGTTAAGAAGAGCATATAGTACTTATCTATTTTGGTCAACTCCTGTTTTGGTCTCTACTGCAACATTTGGGGCATGCTATTTTCTCAAAATTCCGTTACATGCGAACAACGTTTTCACTTTTATCTCAACTTTGAGACTTGTTCAGGACCCCATTCGAACCATACCTGATGTTTTTGCGGTTGTCATTCAAGCCAAGGTTGCATTTGGTCGTATTGTGAAATTCCTTGAGGCACCTGAGCTGCAAACTTCAAATGTCCGGAAGTGCAACATGACGAATGTAGCTAACTCCATTGAAATTAAGTCAGCTAATTTTTCATGGGAAGAGAATTTATCCAAGTCCATACTGAGAAATATAAATTTAGAGGTTAGACCTGGTGAAAAGGTGGCTATATGTGGTGAAGTCGGCTCAGGCAAATCAAGTCTTCTAGCTGCAATTCTTGGAGAAATTCCAAATGTGCAAGGAAATATTCAAGTTTATGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGTCAGGAACTATACAAGAAAATATTCTCTTTGGTTCTTGTATGGATAGTCAGAGATACCGAGAGACTCTTGAGAGATGCTCACTAAGGGTGAATCTAAGTGGAGGTCAGAAGCAGCGGATCCAACTTGCACGCGCTCTCTATCAGGATGCTGATATATATCTCTTGGATGATCCATTCAGTGCCGTTGATGCGCATACTGCCACAAACTTATTTAATGAATATGTAATGGAAGCACTTTCAGGCAAGACAGTACTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTTCGTTTTGTTGATGATGGATGGGGAGATCCTACAAGCAGCTCCTTATCAGCATCTATTGGCTTTAAGCCAAGAATTCCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCCGAAAGGCTTTCAGATGTCACTTCTGCTCAAAATTCTGGAATATCATCTAGAGAGATTAAGAAGAGCTATGTTGAGAAGCCATTAAAAGAAAACAAAGGTGACCAATTGATTAAACTAGAAGAGAGAGAAACAGGAGACACAGGTTTTAAGCCATACATACTGTATCTGAAACAGAACAAAGGGTTCTTGTACTTCTCAATTGCCGTTTGTCTCCACTTCACTTTTATTATGAGTCAGATTGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCAAGTATTAGCACATTGCGGTTGCTTGTGGTTTACTTATCGATTGGATTCTCCGCAACATTTATTTTTCTGTTTAGATCTCTTGCAGCAGTTGTTGGGGGTCTTGAGACATCAAAGTCGTTGTTCTCACAACTACTAAACTCCCTTTTTCGTGCACCCATGTCATTCTATGACTCAACACCTCTGGGAAGGATACTTAGTCGTGTTTCATCTGATCTGAGTATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGGAGCTACCATGAATGCCTATTGCAATCTTGGAGTATTGACTGTTGTTACCTGGCAAGTCTTGTTTGTCTCCATACCAATGGTCTATGTCGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAAGAGTTGATGAGGATCAATGGAACAACTAAGTCCTTTGTAGCAAACCATCTTGCCGAGTCTGTATCAGGAGCCGTTACCATTAGAGCATTCAGTGAAGAAGAGCGCTTCTCAGCAAAGAGCTTTCACCTCATTGACACAAATGCTAGTCCTTATTTCCACAGCTTTTCCGCAAATGAGTGGTTAATCCAACGGTTAGAGATAATCAGTGCATCGGTTCTTGCCTCTGCAGCACTTTGTATGGTTTTGCTTCCTCATGGAACCTTTACCTCTGGGTTTATTGGGATGGCACTTTCTTATGGTCTATCACTAAATGTGTCCTTGATCAACTCAATTCAGAACCAGTGCACTATAGCAAATTACATCATTTCTGTTGAAAGACTAAATCAATACATGCACATTCCAAGCGAAGCCCCAGAAGTAATAGAAGGAAACCGTCCACCGGCCAACTGGCCGGTTGTAGGAAAAGTGGAGATACAAAATTTGCAGATAAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATTAGTTGTGTTTTTGAAGGTGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTCATCGGTGCTTTATTTCGGCTGGTCGAGCCAACTGGAGGGAAGATCATAGTCGATGGCATTGACATCTGCACTATAGGACTTCATGATCTAAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTTAATGGCACTGTCAGATACAATTTGGACCCCTTATCTCAACATTCAGACCAGAAAATATGGGAGGTTCTTGGGAAGTGTCAGCTGCGAGAGGCTGTTGAGGAGAAAGAAAAAGGCTTAGACTCGTTAGTTGTGGATGATGGATCAAACTGGAGCATGGGGCAAAGGCAACTGTTCTGCCTCGGGCGCGCTCTTCTAAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACTGCATCCATTGACAATGCAACTGATACAATCCTGCAGAAGACTATAAGGACTGAGTTTGAAGCTTGTACAGTAATTACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACAATGGTTCTTGCCATTAGTGATGGAAAGATAGTGGAGTATGATGAGCCAATGAGGTTGATGAATAGAGAAGGCTCGCTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCATCTCCAGTCTGCAGAATCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1455

Amino Acids

162.78

Weight (kDa)

8.27

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 194	1.7e-77	ABCC10 N-terminal domain
ABC_membrane	PF00664	304 - 571	1.1e-24	ABC transporter transmembrane region
ABC_tran	PF00005	636 - 752	1e-20	ABC transporter
ABC_membrane	PF00664	894 - 1152	1e-23	ABC transporter transmembrane region
ABC_tran	PF00005	1226 - 1374	1.5e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2881
Acc16I	TGCGCA	2 cut(s)	782, 2271
AccB1I	GGYRCC	1 cut(s)	1792
AccI	GTMKAC	1 cut(s)	3749
AccII	CGCG	2 cut(s)	2211, 4074
AccIII	TCCGGA	1 cut(s)	1818
AciI	CCGC	7 cut(s)	240, 992, 1739, 2194, 2785, 2820, 3327
AclI	AACGTT	1 cut(s)	1671
AclWI	GGATC	8 cut(s)	2068, 2081, 2191, 2204, 2243, 2395, 3179, 4036
AcoI	YGGCCR	4 cut(s)	225, 3600, 3608, 3727
AcuI	CTGAAG	2 cut(s)	956, 1075
AfaI	GTAC	8 cut(s)	257, 516, 1088, 1582, 2331, 2681, 4186, 4334
AfeI	AGCGCT	1 cut(s)	3263
AfiI	CCNNNNNNNGG	5 cut(s)	629, 901, 3598, 3617, 3791
AjnI	CCWGG	5 cut(s)	272, 535, 1933, 2451, 3080
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AleI	CACNNNNGTG	1 cut(s)	1191
Alw21I	GWGCWC	6 cut(s)	141, 1017, 1042, 1542, 2923, 3506
Alw26I	GTCTC	9 cut(s)	226, 1618, 1690, 2135, 2619, 2705, 2867, 3103, 4344
Alw44I	GTGCAC	2 cut(s)	2919, 3502
AlwI	GGATC	8 cut(s)	2068, 2081, 2191, 2204, 2243, 2395, 3179, 4036
Ama87I	CYCGRG	1 cut(s)	4067
Aor13HI	TCCGGA	1 cut(s)	1818
Aor51HI	AGCGCT	1 cut(s)	3263
AoxI	GGCC	6 cut(s)	225, 610, 1321, 3600, 3608, 3727
ApaLI	GTGCAC	2 cut(s)	2919, 3502
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	2100
AspLEI	GCGC	6 cut(s)	783, 2213, 2272, 3264, 4074, 4076
AspS9I	GGNCC	4 cut(s)	959, 1708, 2455, 3913
AsuHPI	GGTGA	9 cut(s)	602, 644, 1208, 1360, 1949, 1970, 2179, 2600, 3275
AsuII	TTCGAA	1 cut(s)	1717
AvaI	CYCGRG	1 cut(s)	4067
AvaII	GGWCC	4 cut(s)	959, 1708, 2455, 3913
BaeGI	GKGCMC	2 cut(s)	2923, 3506
BamHI	GGATCC	2 cut(s)	2073, 2196
BanI	GGYRCC	1 cut(s)	1792
BbsI	GAAGAC	2 cut(s)	1976, 4163
Bbv12I	GWGCWC	6 cut(s)	141, 1017, 1042, 1542, 2923, 3506
BbvCI	CCTCAGC	1 cut(s)	293
BceAI	ACGGC	3 cut(s)	2246, 2678, 3215
BciT130I	CCWGG	5 cut(s)	274, 537, 1935, 2453, 3082
BciVI	GTATCC	2 cut(s)	2952, 4203
BclI	TGATCA	2 cut(s)	661, 3480
BcoDI	GTCTC	9 cut(s)	226, 1618, 1690, 2135, 2619, 2705, 2867, 3103, 4344
BfmI	CTRYAG	6 cut(s)	3131, 3384, 3507, 3828, 4151, 4353
BfoI	RGCGCY	1 cut(s)	3265
BfuI	GTATCC	2 cut(s)	2952, 4203
BglI	GCCNNNNNGGC	1 cut(s)	3735
BglII	AGATCT	2 cut(s)	2843, 2995
BlpI	GCTNAGC	1 cut(s)	1386
BmcAI	AGTACT	4 cut(s)	516, 1582, 2331, 4334
Bme1390I	CCNGG	5 cut(s)	274, 537, 1935, 2453, 3082
Bme18I	GGWCC	4 cut(s)	959, 1708, 2455, 3913
BmeT110I	CYCGRG	1 cut(s)	4067
BmgT120I	GGNCC	4 cut(s)	959, 1708, 2455, 3913
BmrFI	CCNGG	5 cut(s)	274, 537, 1935, 2453, 3082
BmsI	GCATC	9 cut(s)	393, 438, 1213, 2144, 2215, 2257, 2434, 3377, 4130
BpiI	GAAGAC	2 cut(s)	1976, 4163
BplI	GAGNNNNNCTC	6 cut(s)	361, 393, 2141, 2173, 3251, 3283
BpmI	CTGGAG	7 cut(s)	60, 471, 776, 1362, 3810, 4057, 4331
Bpu10I	CCTNAGC	3 cut(s)	293, 1797, 1969
Bpu1102I	GCTNAGC	1 cut(s)	1386
Bpu14I	TTCGAA	1 cut(s)	1717
BpuEI	CTTGAG	5 cut(s)	1424, 1808, 2168, 2891, 3855
Bsa29I	ATCGAT	1 cut(s)	2807
BsaBI	GATNNNNATC	2 cut(s)	2235, 3170
BsaI	GGTCTC	2 cut(s)	1618, 4344
BsaJI	CCNNGG	4 cut(s)	535, 1341, 1755, 4066
BsaWI	WCCGGW	1 cut(s)	1818
BsaXI	ACNNNNNCTCC	2 cut(s)	4322, 4352
Bsc4I	CCNNNNNNNGG	5 cut(s)	629, 901, 3598, 3617, 3791
Bse118I	RCCGGY	2 cut(s)	3598, 3610
Bse1I	ACTGG	9 cut(s)	902, 1379, 2077, 3499, 3611, 3793, 4040, 4340, 4348
Bse3DI	GCAATG	3 cut(s)	1378, 1563, 2780
Bse8I	GATNNNNATC	2 cut(s)	2235, 3170
BseAI	TCCGGA	1 cut(s)	1818
BseBI	CCWGG	5 cut(s)	274, 537, 1935, 2453, 3082
BseCI	ATCGAT	1 cut(s)	2807
BseDI	CCNNGG	4 cut(s)	535, 1341, 1755, 4066
BseJI	GATNNNNATC	2 cut(s)	2235, 3170
BseLI	CCNNNNNNNGG	5 cut(s)	629, 901, 3598, 3617, 3791
BseMI	GCAATG	3 cut(s)	1378, 1563, 2780
BseNI	ACTGG	9 cut(s)	902, 1379, 2077, 3499, 3611, 3793, 4040, 4340, 4348
BsePI	GCGCGC	1 cut(s)	4072
BseRI	GAGGAG	2 cut(s)	1550, 4001
BseSI	GKGCMC	2 cut(s)	2923, 3506
BseYI	CCCAGC	1 cut(s)	861
BsgI	GTGCAG	4 cut(s)	413, 1117, 1335, 3808
Bsh1236I	CGCG	2 cut(s)	2211, 4074
BshFI	GGCC	6 cut(s)	227, 612, 1323, 3602, 3610, 3729
BshNI	GGYRCC	1 cut(s)	1792
BshVI	ATCGAT	1 cut(s)	2807
BsiHKAI	GWGCWC	6 cut(s)	141, 1017, 1042, 1542, 2923, 3506
BsiHKCI	CYCGRG	1 cut(s)	4067
BsiSI	CCGG	5 cut(s)	1035, 1819, 3599, 3611, 3730
BslI	CCNNNNNNNGG	5 cut(s)	629, 901, 3598, 3617, 3791
BsmAI	GTCTC	9 cut(s)	226, 1618, 1690, 2135, 2619, 2705, 2867, 3103, 4344
BsmI	GAATGC	2 cut(s)	3049, 3245
BsnI	GGCC	6 cut(s)	227, 612, 1323, 3602, 3610, 3729
Bso31I	GGTCTC	2 cut(s)	1618, 4344
BsoBI	CYCGRG	1 cut(s)	4067
Bsp119I	TTCGAA	1 cut(s)	1717
Bsp1286I	GDGCHC	6 cut(s)	141, 1017, 1042, 1542, 2923, 3506
Bsp13I	TCCGGA	1 cut(s)	1818
Bsp1407I	TGTACA	1 cut(s)	4184
Bsp1720I	GCTNAGC	1 cut(s)	1386
BspACI	CCGC	7 cut(s)	240, 992, 1739, 2194, 2785, 2820, 3327
BspANI	GGCC	6 cut(s)	227, 612, 1323, 3602, 3610, 3729
BspDI	ATCGAT	1 cut(s)	2807
BspEI	TCCGGA	1 cut(s)	1818
BspFNI	CGCG	2 cut(s)	2211, 4074
BspHI	TCATGA	2 cut(s)	1203, 3838
BspMAI	CTGCAG	3 cut(s)	3388, 4155, 4357
BspPI	GGATC	8 cut(s)	2068, 2081, 2191, 2204, 2243, 2395, 3179, 4036
BspQI	GCTCTTC	5 cut(s)	479, 1564, 2546, 3252, 4083
BspT104I	TTCGAA	1 cut(s)	1717
BspT107I	GGYRCC	1 cut(s)	1792
BspTNI	GGTCTC	2 cut(s)	1618, 4344
BsrDI	GCAATG	3 cut(s)	1378, 1563, 2780
BsrFI	RCCGGY	2 cut(s)	3598, 3610
BsrGI	TGTACA	1 cut(s)	4184
BsrI	ACTGG	9 cut(s)	902, 1379, 2077, 3499, 3611, 3793, 4040, 4340, 4348
BssAI	RCCGGY	2 cut(s)	3598, 3610
BssECI	CCNNGG	4 cut(s)	535, 1341, 1755, 4066
BssHII	GCGCGC	1 cut(s)	4072
BssT1I	CCWWGG	2 cut(s)	1341, 1755
Bst2UI	CCWGG	5 cut(s)	274, 537, 1935, 2453, 3082
Bst6I	CTCTTC	8 cut(s)	279, 479, 1564, 1878, 2546, 2604, 3252, 4083
BstAUI	TGTACA	1 cut(s)	4184
BstBI	TTCGAA	1 cut(s)	1717
BstC8I	GCNNGC	7 cut(s)	836, 1100, 1636, 2209, 2364, 4074, 4307
BstEII	GGTNACC	1 cut(s)	2588
BstFNI	CGCG	2 cut(s)	2211, 4074
BstH2I	RGCGCY	1 cut(s)	3265
BstHHI	GCGC	6 cut(s)	783, 2213, 2272, 3264, 4074, 4076
BstMAI	GTCTC	9 cut(s)	226, 1618, 1690, 2135, 2619, 2705, 2867, 3103, 4344
BstNI	CCWGG	5 cut(s)	274, 537, 1935, 2453, 3082
BstNSI	RCATGY	3 cut(s)	1638, 1664, 3553
BstPI	GGTNACC	1 cut(s)	2588
BstSCI	CCNGG	5 cut(s)	272, 535, 1933, 2451, 3080
BstSFI	CTRYAG	6 cut(s)	3131, 3384, 3507, 3828, 4151, 4353
BstSLI	GKGCMC	2 cut(s)	2923, 3506
BstUI	CGCG	2 cut(s)	2211, 4074
BstV2I	GAAGAC	2 cut(s)	1976, 4163
BstX2I	RGATCY	5 cut(s)	2073, 2196, 2400, 2843, 2995
BstXI	CCANNNNNNTGG	1 cut(s)	3109
BstYI	RGATCY	5 cut(s)	2073, 2196, 2400, 2843, 2995
Bsu15I	ATCGAT	1 cut(s)	2807
BsuI	GTATCC	2 cut(s)	2952, 4203
BsuRI	GGCC	6 cut(s)	227, 612, 1323, 3602, 3610, 3729
BsuTUI	ATCGAT	1 cut(s)	2807
BtsI	GCAGTG	3 cut(s)	1088, 3150, 3745
Cac8I	GCNNGC	7 cut(s)	836, 1100, 1636, 2209, 2364, 4074, 4307
CciI	TCATGA	2 cut(s)	1203, 3838
CfoI	GCGC	6 cut(s)	783, 2213, 2272, 3264, 4074, 4076
Cfr10I	RCCGGY	2 cut(s)	3598, 3610
Cfr13I	GGNCC	4 cut(s)	959, 1708, 2455, 3913
ClaI	ATCGAT	1 cut(s)	2807
CseI	GACGC	1 cut(s)	1267
CsiI	ACCWGGT	1 cut(s)	1933
Csp6I	GTAC	8 cut(s)	256, 515, 1087, 1581, 2330, 2680, 4185, 4333
CspCI	CAANNNNNGTGG	2 cut(s)	1064, 1099
CviQI	GTAC	8 cut(s)	256, 515, 1087, 1581, 2330, 2680, 4185, 4333
DrdI	GACNNNNNNGTC	1 cut(s)	2881
DseDI	GACNNNNNNGTC	1 cut(s)	2881
EaeI	YGGCCR	4 cut(s)	225, 3600, 3608, 3727
Eam1104I	CTCTTC	8 cut(s)	279, 479, 1564, 1878, 2546, 2604, 3252, 4083
EarI	CTCTTC	8 cut(s)	279, 479, 1564, 1878, 2546, 2604, 3252, 4083
Eco130I	CCWWGG	2 cut(s)	1341, 1755
Eco31I	GGTCTC	2 cut(s)	1618, 4344
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	4 cut(s)	959, 1708, 2455, 3913
Eco47III	AGCGCT	1 cut(s)	3263
Eco57I	CTGAAG	2 cut(s)	956, 1075
Eco88I	CYCGRG	1 cut(s)	4067
Eco91I	GGTNACC	1 cut(s)	2588
EcoO109I	RGGNCCY	2 cut(s)	1708, 2455
EcoO65I	GGTNACC	1 cut(s)	2588
EcoRI	GAATTC	1 cut(s)	2447
EcoRII	CCWGG	5 cut(s)	272, 535, 1933, 2451, 3080
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	1341, 1755
EcoT22I	ATGCAT	2 cut(s)	92, 1492
ErhI	CCWWGG	2 cut(s)	1341, 1755
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FbaI	TGATCA	2 cut(s)	661, 3480
FblI	GTMKAC	1 cut(s)	3749
FspAI	RTGCGCAY	1 cut(s)	2271
FspI	TGCGCA	2 cut(s)	782, 2271
GlaI	GCGC	6 cut(s)	782, 2212, 2271, 3263, 4073, 4075
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	7 cut(s)	60, 471, 776, 1362, 3810, 4057, 4331
HaeII	RGCGCY	1 cut(s)	3265
HaeIII	GGCC	6 cut(s)	227, 612, 1323, 3602, 3610, 3729
HapII	CCGG	5 cut(s)	1035, 1819, 3599, 3611, 3730
HgaI	GACGC	1 cut(s)	1267
HhaI	GCGC	6 cut(s)	783, 2213, 2272, 3264, 4074, 4076
Hin6I	GCGC	6 cut(s)	781, 2211, 2270, 3262, 4072, 4074
HinP1I	GCGC	6 cut(s)	781, 2211, 2270, 3262, 4072, 4074
HincII	GTYRAC	2 cut(s)	1182, 1599
HindII	GTYRAC	2 cut(s)	1182, 1599
HindIII	AAGCTT	2 cut(s)	1412, 4179
HpaII	CCGG	5 cut(s)	1035, 1819, 3599, 3611, 3730
HphI	GGTGA	9 cut(s)	602, 644, 1208, 1360, 1949, 1970, 2179, 2600, 3275
HpyCH4IV	ACGT	1 cut(s)	1671
HpySE526I	ACGT	1 cut(s)	1671
HspAI	GCGC	6 cut(s)	781, 2211, 2270, 3262, 4072, 4074
Kpn2I	TCCGGA	1 cut(s)	1818
Ksp22I	TGATCA	2 cut(s)	661, 3480
LguI	GCTCTTC	5 cut(s)	479, 1564, 2546, 3252, 4083
LweI	GCATC	9 cut(s)	393, 438, 1213, 2144, 2215, 2257, 2434, 3377, 4130
MabI	ACCWGGT	1 cut(s)	1933
MaeII	ACGT	1 cut(s)	1671
MfeI	CAATTG	3 cut(s)	1154, 2594, 2688
MflI	RGATCY	5 cut(s)	2073, 2196, 2400, 2843, 2995
MhlI	GDGCHC	6 cut(s)	141, 1017, 1042, 1542, 2923, 3506
MlyI	GAGTC	6 cut(s)	644, 2137, 2731, 2933, 3224, 4001
MmeI	TCCRAC	2 cut(s)	2224, 3370
Mph1103I	ATGCAT	2 cut(s)	92, 1492
MroI	TCCGGA	1 cut(s)	1818
MroXI	GAANNNNTTC	1 cut(s)	2100
MslI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3107
MspA1I	CMGCKG	2 cut(s)	2194, 3970
MspI	CCGG	5 cut(s)	1035, 1819, 3599, 3611, 3730
MspR9I	CCNGG	5 cut(s)	274, 537, 1935, 2453, 3082
MunI	CAATTG	3 cut(s)	1154, 2594, 2688
Mva1269I	GAATGC	2 cut(s)	3049, 3245
MvaI	CCWGG	5 cut(s)	274, 537, 1935, 2453, 3082
MvnI	CGCG	2 cut(s)	2211, 4074
NmeAIII	GCCGAG	2 cut(s)	203, 3238
NmuCI	GTSAC	5 cut(s)	602, 1071, 2338, 2506, 2588
NsbI	TGCGCA	2 cut(s)	782, 2271
NsiI	ATGCAT	2 cut(s)	92, 1492
NspI	RCATGY	3 cut(s)	1638, 1664, 3553
NspV	TTCGAA	1 cut(s)	1717
OliI	CACNNNNGTG	1 cut(s)	1191
PaeI	GCATGC	1 cut(s)	1638
PagI	TCATGA	2 cut(s)	1203, 3838
PauI	GCGCGC	1 cut(s)	4072
PciSI	GCTCTTC	5 cut(s)	479, 1564, 2546, 3252, 4083
PctI	GAATGC	2 cut(s)	3049, 3245
PdmI	GAANNNNTTC	1 cut(s)	2100
PfeI	GAWTC	5 cut(s)	35, 1064, 2170, 2814, 4358
PflFI	GACNNNGTC	1 cut(s)	2459
PfoI	TCCNGGA	1 cut(s)	2451
PleI	GAGTC	6 cut(s)	643, 2137, 2730, 2933, 3223, 4001
PpsI	GAGTC	6 cut(s)	643, 2137, 2730, 2933, 3223, 4001
PpuMI	RGGWCCY	2 cut(s)	1708, 2455
PshBI	ATTAAT	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	1671
Psp5II	RGGWCCY	2 cut(s)	1708, 2455
Psp6I	CCWGG	5 cut(s)	272, 535, 1933, 2451, 3080
PspEI	GGTNACC	1 cut(s)	2588
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	5 cut(s)	272, 535, 1933, 2451, 3080
PspPI	GGNCC	4 cut(s)	959, 1708, 2455, 3913
PspPPI	RGGWCCY	2 cut(s)	1708, 2455
PstI	CTGCAG	3 cut(s)	3388, 4155, 4357
PsuI	RGATCY	5 cut(s)	2073, 2196, 2400, 2843, 2995
PsyI	GACNNNGTC	1 cut(s)	2459
PteI	GCGCGC	1 cut(s)	4072
PvuII	CAGCTG	1 cut(s)	3970
RsaI	GTAC	8 cut(s)	257, 516, 1088, 1582, 2331, 2681, 4186, 4334
RsaNI	GTAC	8 cut(s)	256, 515, 1087, 1581, 2330, 2680, 4185, 4333
RseI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3107
SapI	GCTCTTC	5 cut(s)	479, 1564, 2546, 3252, 4083
Sau96I	GGNCC	4 cut(s)	959, 1708, 2455, 3913
ScaI	AGTACT	4 cut(s)	516, 1582, 2331, 4334
SchI	GAGTC	6 cut(s)	644, 2137, 2731, 2933, 3224, 4001
ScrFI	CCNGG	5 cut(s)	274, 537, 1935, 2453, 3082
SduI	GDGCHC	6 cut(s)	141, 1017, 1042, 1542, 2923, 3506
SexAI	ACCWGGT	1 cut(s)	1933
SfaNI	GCATC	9 cut(s)	393, 438, 1213, 2144, 2215, 2257, 2434, 3377, 4130
SfcI	CTRYAG	6 cut(s)	3131, 3384, 3507, 3828, 4151, 4353
SfuI	TTCGAA	1 cut(s)	1717
SinI	GGWCC	4 cut(s)	959, 1708, 2455, 3913
SmiMI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3107
SmlI	CTYRAG	5 cut(s)	1439, 1787, 2147, 2870, 3870
SmoI	CTYRAG	5 cut(s)	1439, 1787, 2147, 2870, 3870
SphI	GCATGC	1 cut(s)	1638
SsiI	CCGC	7 cut(s)	240, 992, 1739, 2194, 2785, 2820, 3327
SspI	AATATT	3 cut(s)	2029, 2101, 3140
StyD4I	CCNGG	5 cut(s)	272, 535, 1933, 2451, 3080
StyI	CCWWGG	2 cut(s)	1341, 1755
TaiI	ACGT	1 cut(s)	1674
TaqI	TCGA	9 cut(s)	206, 812, 1011, 1052, 1717, 2807, 3679, 3780, 3807
TatI	WGTACW	7 cut(s)	255, 514, 1580, 2329, 2679, 4184, 4332
TfiI	GAWTC	5 cut(s)	35, 1064, 2170, 2814, 4358
TseFI	GTSAC	5 cut(s)	602, 1071, 2338, 2506, 2588
Tsp45I	GTSAC	5 cut(s)	602, 1071, 2338, 2506, 2588
TspGWI	ACGGA	2 cut(s)	1301, 1644
Tth111I	GACNNNGTC	1 cut(s)	2459
VneI	GTGCAC	2 cut(s)	2919, 3502
VpaK11BI	GGWCC	4 cut(s)	959, 1708, 2455, 3913
VspI	ATTAAT	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	2537
XceI	RCATGY	3 cut(s)	1638, 1664, 3553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3603
XmiI	GTMKAC	1 cut(s)	3749
XmnI	GAANNNNTTC	1 cut(s)	2100
ZrmI	AGTACT	4 cut(s)	516, 1582, 2331, 4334
Zsp2I	ATGCAT	2 cut(s)	92, 1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.