Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

66216841 .. 66223594

Gene Structure 6754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG439400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4419 bp

ATGATGGAGGATTTGTGGGTTCTGTATTGTGGGGAATCTGCACCTTCCAATTTTGACTTTCTGGGCCATCCTTCTTCATGCACCAATCACTTGTTGATAATTTGCTTGGACATAGTTCTGTTAGTAATGCTCTTGTTCACTATGTTTCATAAGTCATCATCATCCAAATCAGCTCACATTCCAGCCCGGTTTCGAGGCTTTTCCAGTTTGCAAATAGTGTCTGCCATTGTCAATGGCTGTCTTGGATTTGTGTACTTGTGCTTGGGAACCTGGATTTTAGTACAGAAGCTGAGGGATTCAGGATCTGCTTTGCCTTTGAATTGGTGGTTACTTACTTTGTTTCAAGGGATAACATGGCTGTTGGTGAGTTTGAGTCTGAGCATCAGGGGAAAACTACTTGCAAGGCAACCTTCGAGACTGTTGTCTATCCTTGCATTCCTGTTTTCTGGAATTGTCTGTGCTCTATCGCTCTTCGCAGCCATTTTTGGAAAAGAAATATCTGTGAAGATAGTTCTAGATATCCTATCTTTTCCAGGAGCAGCATTGTTGCTGTTATGTGTTTATAAGGGTTATATACATGAAGAGGGTGATGAGAGCCTCAATGGAAATGGCCTTTATACTCCTCTTTATGGTGAGTCCAATGTCACTAGTAAAGGTGAAGATCATGTTACTCCATTTGCCAAAGCTGGATTTTTCAGTAAAATGTCACTTTGGTGGCTGAATTCATTGATGAAAAAGGGTAGAGAGAAAACTCTTGAGGACGAAGACATACCAAAGTTGCGTGAGGAAGATCAAGCAGAAAGCTGTTATCTGCTGTTCTTGGAGCAACTGAGCAAGCAGAAAGAAATTGATCCGTCTTCCCAACCATCAGTGTTGAAGACGATAATCATATGCCACTGGAAGGAGATTTTACTATCTGGATTCTTTGCTTTACTTAAGATAGTCACTCTCTCTGCAGGTCCTTTGCTTCTCAATGCCTTTATTTTGGTTGCTGAGGGAAATGAAAGTTTTAAATATGAAGGTTACGTGTTGGCCATAACACTTTTCCTTTCAAAGACCATTGAATCTTTGTCACAAAGGCAGTGGTACTTAAGATGCAGGCTTATTGGTTTGAAAATTAGGTCTTTGATATCAGCAGCCATTTACAAGAAGCAATTGAGATTATCGAATGCTGCTAAGTTGACACACTCTGGTGGTGAAATCATGAATTATGTTACTGTGGATGCTTATAGGATTGGAGAATTCCCATTTTGGTTCCATCAGACTTGGACAACTAGCCTCCAGCTTTGTTTTGCTTTGGTAATTCTTTTCCGTGCAGTCGGCCTAGCCACATTTGCATCATTGGTGGTGATAGTTTTGACTGTTGTTTGTAATGCTCCACTTGCTAAGTTACAACATAGGTTTCAAAGTAAGCTTATGGTGGCACAAGATGAAAGACTCAAGGCATGTTCAGAAGCTCTTATAAACATGAAGGTACTAAAACTGTATGCATGGGAAACCCATTTCAAGAATGCAATAGAGAAATTGAGGAAGGAGGAGCATAAATGGTTATCTGCTGTACAGCTAAGGAAAGCATATAACTCCTATCTCTTTTGGTCATCTCCGGTTTTGGTCTCTGCTGCAACATTTGGGGCTTGCTATTTTCTCGGAATTCCATTGCATGCAAACAATGTTTTTACTTTTGTCGCAACTTTGCGCCTTGTTCAGGACCCCATTCGATCTATACCTGAGGTTATTGGGGTTGTCATTCAAGCCAAGGTTGCATTTGAGCGTATTGTGAAATTCCTTGAGGCACCAGAGCTGCACTCTTCAAATGTCAGGAAATGCAACATGAAGAATGTAGCACATTCCATTGTTATTAAGTCAGCTAGTTTTTCATGGGATAATTTATCAAAGGCCACACTGAGAAATATAAATTTAGAGGTTAGCCCTGGTCAGAAGGTGGCTATATGTGGAGAAGTTGGCTCAGGAAAATCAAGCCTCCTAGCTGCAATTCTCGGAGAAATTCCAAATGTTCAAGGAACTATTCAAGTTTTTGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGACAGGGACAATACAGGAGAATATTCTATTTGGTTCTGCTATGGATAGTGAAAGATACCGAGAAACGCTTGAGAGATGTTCACTTGTAAAGGACCTTGAGTTACTGCCCTATGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAATCTAAGTGGTGGTCAGAAGCAGCGGATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGACATATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCTACTAACCTATTTAATGAATATGTTATGGAAGCACTTTCAGGGAAGACAGTCTTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTCAGTCTTGTTGATGTTGGATGGGGAAATCCTTGAAGCAGCTCCTTATTATCAGTTATTGGCCTCGAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGTAGATGTCCCTTCTGTCCAAAATTCTGGAACATCATCCAGAGAGATTAAGAAGGCTTATGTAGAGAAGAAATTGAAAGGAAATAAAGGTGACCAGTTGATTAAGATAGAAGAGAGAGAAATAGGAGACACTGGTTTGAGGCCATATAAACAGTATCTGAGACAGAACAAAGGCGTCTTGTACTTCTCAGCCGCTATTCTTTTACACCTGACATTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCTGTCGATTGGATTTTCTGCAACATTTATTTTGCTGTTCAGATCTCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTAGACTCTCTATTTCGTGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTGGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCCAAGGAGTTGATGAGGATCAATGGAACAACTAAGTCTTTTGTAGCAAACCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGCTCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACCAGTGCACTGTAGCAAATTACATAATTTCTGTTGAAAGACTAAATCAATACACACATGTACCAAGCGAAGCCCCTGAAGTCATAGAGGGAAACCGTCCACCTCCCAACTGGCCTGTTGTAGGAAAAGTGGAAATACAAAATTTGCAGATAAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATCAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTAATCGGTGCTCTATTTCGTCTGGTGGAGCCAGCCGGAGGGAAGATTATAGTCGATGGCATTGACATCTCTACTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTCAATGGGACTGTGAGATACAATTTGGATCCCTTATATCAACATTCAGACCATGAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGGGAGGCTGTTCAAGAAAAAGAAGGCGGCTTAGACTCTTTAGTTGTGGAAGATGGATCAAACTGGAGCATGGGGCAAAGGCAGTTGTTCTGTTTGGGCCGTGCTCTTTTGAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACAGCTTCCATCGACAATGCAACTGATATGATTTTACAGAAGACTATACGGACTGAATTTGCAGATTGTACAGTTATTACAGTAGCTCACAGGATACCGACTGTGATGGATTGCACAATGGTCCTTGCCATTAGTGACGGGAAAATAGTGGAGTATGATGAGCCAATGAACCTAATGAAAAGAGAAGGCTCACTATTCGGGCAGCTTGTTAAGGAATACTGGTCTCATCTCCAGTCTGCAGAATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1472

Amino Acids

163.68

Weight (kDa)

7.0

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 191	2.4e-77	ABCC10 N-terminal domain
ABC_membrane	PF00664	303 - 568	4.6e-24	ABC transporter transmembrane region
ABC_tran	PF00005	635 - 769	7.7e-23	ABC transporter
ABC_membrane	PF00664	910 - 1173	2.2e-26	ABC transporter transmembrane region
ABC_tran	PF00005	1243 - 1391	1.5e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	564, 1463
Acc16I	TGCGCA	1 cut(s)	3418
Acc36I	ACCTGC	1 cut(s)	947
AccB1I	GGYRCC	2 cut(s)	1792, 3278
AccI	GTMKAC	1 cut(s)	3800
AciI	CCGC	4 cut(s)	2245, 2742, 3313, 4050
AcoI	YGGCCR	2 cut(s)	1032, 3778
AcuI	CTGAAG	1 cut(s)	3645
AcyI	GRCGYC	2 cut(s)	2724, 3279
AfaI	GTAC	9 cut(s)	254, 282, 1088, 1476, 1560, 2732, 3117, 3609, 4237
AfiI	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
AflII	CTTAAG	2 cut(s)	935, 1090
AflIII	ACRYGT	3 cut(s)	1026, 3522, 3604
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	4 cut(s)	269, 532, 1930, 3066
AleI	CACNNNNGTG	2 cut(s)	712, 1191
Alw21I	GWGCWC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
Alw26I	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
Alw44I	GTGCAC	2 cut(s)	2970, 3553
AlwNI	CAGNNNCTG	4 cut(s)	289, 305, 2707, 3269
Ama87I	CYCGRG	1 cut(s)	2488
ApaLI	GTGCAC	2 cut(s)	2970, 3553
AspLEI	GCGC	3 cut(s)	1698, 3281, 3419
AspS9I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	9 cut(s)	376, 599, 644, 668, 1208, 1360, 2201, 2651, 3326
AsuNHI	GCTAGC	1 cut(s)	3353
AvaI	CYCGRG	1 cut(s)	2488
AvaII	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
AxyI	CCTNAGG	1 cut(s)	1728
BaeGI	GKGCMC	2 cut(s)	2974, 3557
BaeI	ACNNNNGTAYC	2 cut(s)	3591, 3624
BalI	TGGCCA	1 cut(s)	1034
BamHI	GGATCC	2 cut(s)	2070, 3964
BanI	GGYRCC	2 cut(s)	1792, 3278
BauI	CACGAG	1 cut(s)	2259
BbsI	GAAGAC	6 cut(s)	771, 849, 884, 2381, 3315, 4214
Bbv12I	GWGCWC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
BbvCI	CCTCAGC	2 cut(s)	290, 993
BceAI	ACGGC	1 cut(s)	4107
BciT130I	CCWGG	4 cut(s)	271, 534, 1932, 3068
BciVI	GTATCC	2 cut(s)	3003, 4254
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BcuI	ACTAGT	1 cut(s)	647
BfmI	CTRYAG	6 cut(s)	954, 3182, 3435, 3558, 3879, 4404
BfoI	RGCGCY	1 cut(s)	3282
BfrI	CTTAAG	2 cut(s)	935, 1090
BfuAI	ACCTGC	1 cut(s)	947
BfuI	GTATCC	2 cut(s)	3003, 4254
BglI	GCCNNNNNGGC	1 cut(s)	3786
BglII	AGATCT	2 cut(s)	2894, 3046
BmcAI	AGTACT	1 cut(s)	3117
Bme1390I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
Bme18I	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
BmeT110I	CYCGRG	1 cut(s)	2488
BmgT120I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
BmiI	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3834, 3966
BmrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
BmsI	GCATC	6 cut(s)	390, 1085, 1213, 1346, 2308, 2936
BmtI	GCTAGC	1 cut(s)	3357
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	6 cut(s)	771, 849, 884, 2381, 3315, 4214
BplI	GAGNNNNNCTC	2 cut(s)	1790, 1822
BpmI	CTGGAG	3 cut(s)	1265, 4108, 4382
Bpu10I	CCTNAGC	4 cut(s)	290, 993, 1565, 1966
BpuEI	CTTGAG	7 cut(s)	776, 1424, 1808, 2165, 2192, 2942, 3906
BpuMI	CCSGG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	3221
BsaHI	GRCGYC	2 cut(s)	2724, 3279
BsaI	GGTCTC	2 cut(s)	1618, 4395
BsaJI	CCNNGG	3 cut(s)	1755, 1930, 3207
BsaWI	WCCGGW	1 cut(s)	1603
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
Bse21I	CCTNAGG	1 cut(s)	1728
Bse3DI	GCAATG	2 cut(s)	1655, 2831
Bse8I	GATNNNNATC	1 cut(s)	3221
BseBI	CCWGG	4 cut(s)	271, 534, 1932, 3068
BseDI	CCNNGG	3 cut(s)	1755, 1930, 3207
BseGI	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715
BseJI	GATNNNNATC	1 cut(s)	3221
BseLI	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
BseMI	GCAATG	2 cut(s)	1655, 2831
BseRI	GAGGAG	3 cut(s)	612, 1550, 4150
BseSI	GKGCMC	2 cut(s)	2974, 3557
BsgI	GTGCAG	3 cut(s)	24, 1335, 1787
BshNI	GGYRCC	2 cut(s)	1792, 3278
BsiHKAI	GWGCWC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
BsiHKCI	CYCGRG	1 cut(s)	2488
BsiSI	CCGG	4 cut(s)	187, 1604, 3781, 3840
BslFI	GGGAC	3 cut(s)	2095, 2543, 3958
BslI	CCNNNNNNNGG	6 cut(s)	629, 901, 1705, 3319, 3668, 3842
BsmAI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BsmFI	GGGAC	3 cut(s)	2095, 2543, 3958
BsmI	GAATGC	4 cut(s)	434, 1174, 1516, 2281
Bso31I	GGTCTC	2 cut(s)	1618, 4395
BsoBI	CYCGRG	1 cut(s)	2488
Bsp1286I	GDGCHC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
Bsp1407I	TGTACA	2 cut(s)	1558, 4235
BspACI	CCGC	4 cut(s)	2245, 2742, 3313, 4050
BspHI	TCATGA	2 cut(s)	1203, 3889
BspLI	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3834, 3966
BspMAI	CTGCAG	3 cut(s)	958, 3439, 4408
BspMI	ACCTGC	1 cut(s)	947
BspOI	GCTAGC	1 cut(s)	3357
BspQI	GCTCTTC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	1792, 3278
BspTI	CTTAAG	2 cut(s)	935, 1090
BspTNI	GGTCTC	2 cut(s)	1618, 4395
BsrDI	GCAATG	2 cut(s)	1655, 2831
BsrGI	TGTACA	2 cut(s)	1558, 4235
BssECI	CCNNGG	3 cut(s)	1755, 1930, 3207
BssNI	GRCGYC	2 cut(s)	2724, 3279
BssSI	CACGAG	1 cut(s)	2259
BssT1I	CCWWGG	2 cut(s)	1755, 3207
Bst2BI	CACGAG	1 cut(s)	2259
Bst2UI	CCWGG	4 cut(s)	271, 534, 1932, 3068
Bst6I	CTCTTC	5 cut(s)	476, 576, 1813, 2655, 3941
BstACI	GRCGYC	2 cut(s)	2724, 3279
BstAFI	CTTAAG	2 cut(s)	935, 1090
BstAPI	GCANNNNNTGC	1 cut(s)	2327
BstAUI	TGTACA	2 cut(s)	1558, 4235
BstBAI	YACGTR	1 cut(s)	1027
BstC8I	GCNNGC	7 cut(s)	836, 1100, 1636, 1662, 2415, 3355, 3837
BstEII	GGTNACC	1 cut(s)	2639
BstENI	CCTNNNNNAGG	2 cut(s)	1703, 3666
BstF5I	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715
BstH2I	RGCGCY	1 cut(s)	3282
BstHHI	GCGC	3 cut(s)	1698, 3281, 3419
BstMAI	GTCTC	5 cut(s)	409, 1618, 2670, 2704, 4395
BstMWI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3083, 3428, 3437, 3786
BstNI	CCWGG	4 cut(s)	271, 534, 1932, 3068
BstNSI	RCATGY	4 cut(s)	1449, 1664, 3526, 3608
BstPAI	GACNNNNGTC	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	2639
BstSCI	CCNGG	5 cut(s)	185, 269, 532, 1930, 3066
BstSFI	CTRYAG	6 cut(s)	954, 3182, 3435, 3558, 3879, 4404
BstSLI	GKGCMC	2 cut(s)	2974, 3557
BstV2I	GAAGAC	6 cut(s)	771, 849, 884, 2381, 3315, 4214
BstX2I	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
BstXI	CCANNNNNNTGG	2 cut(s)	2576, 3160
BstYI	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
Bsu36I	CCTNAGG	1 cut(s)	1728
BsuI	GTATCC	2 cut(s)	3003, 4254
BtsCI	GGATG	8 cut(s)	67, 161, 1228, 2302, 2449, 2585, 2802, 3715
BtsI	GCAGTG	3 cut(s)	1088, 3201, 3796
BveI	ACCTGC	1 cut(s)	947
Cac8I	GCNNGC	7 cut(s)	836, 1100, 1636, 1662, 2415, 3355, 3837
CaiI	CAGNNNCTG	4 cut(s)	289, 305, 2707, 3269
CciI	TCATGA	2 cut(s)	1203, 3889
CfoI	GCGC	3 cut(s)	1698, 3281, 3419
Cfr13I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
CseI	GACGC	1 cut(s)	2713
Csp6I	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2731, 3116, 3608, 4236
CspCI	CAANNNNNGTGG	4 cut(s)	1064, 1099, 2209, 2244
CviQI	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2731, 3116, 3608, 4236
DinI	GGCGCC	1 cut(s)	3280
DraI	TTTAAA	1 cut(s)	1012
EaeI	YGGCCR	2 cut(s)	1032, 3778
Eam1104I	CTCTTC	5 cut(s)	476, 576, 1813, 2655, 3941
EarI	CTCTTC	5 cut(s)	476, 576, 1813, 2655, 3941
Eco130I	CCWWGG	2 cut(s)	1755, 3207
Eco31I	GGTCTC	2 cut(s)	1618, 4395
Eco32I	GATATC	2 cut(s)	520, 1131
Eco47I	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
Eco57I	CTGAAG	1 cut(s)	3645
Eco81I	CCTNAGG	1 cut(s)	1728
Eco88I	CYCGRG	1 cut(s)	2488
Eco91I	GGTNACC	1 cut(s)	2639
EcoNI	CCTNNNNNAGG	2 cut(s)	1703, 3666
EcoO109I	RGGNCCY	4 cut(s)	959, 1708, 2167, 2506
EcoO65I	GGTNACC	1 cut(s)	2639
EcoRI	GAATTC	3 cut(s)	721, 1241, 1650
EcoRII	CCWGG	4 cut(s)	269, 532, 1930, 3066
EcoRV	GATATC	2 cut(s)	520, 1131
EcoT14I	CCWWGG	2 cut(s)	1755, 3207
EcoT22I	ATGCAT	1 cut(s)	1492
EgeI	GGCGCC	1 cut(s)	3280
EheI	GGCGCC	1 cut(s)	3280
ErhI	CCWWGG	2 cut(s)	1755, 3207
FalI	AAGNNNNNCTT	4 cut(s)	394, 426, 2366, 2398
FaqI	GGGAC	3 cut(s)	2095, 2543, 3958
FauNDI	CATATG	1 cut(s)	890
FblI	GTMKAC	1 cut(s)	3800
FokI	GGATG	8 cut(s)	54, 148, 1235, 2309, 2456, 2572, 2809, 3722
FspI	TGCGCA	1 cut(s)	3418
GlaI	GCGC	3 cut(s)	1697, 3280, 3418
GsuI	CTGGAG	3 cut(s)	1265, 4108, 4382
HaeII	RGCGCY	1 cut(s)	3282
HapII	CCGG	4 cut(s)	187, 1604, 3781, 3840
HgaI	GACGC	1 cut(s)	2713
HhaI	GCGC	3 cut(s)	1698, 3281, 3419
Hin1I	GRCGYC	2 cut(s)	2724, 3279
Hin6I	GCGC	3 cut(s)	1696, 3279, 3417
HinP1I	GCGC	3 cut(s)	1696, 3279, 3417
HincII	GTYRAC	2 cut(s)	1182, 2904
HindII	GTYRAC	2 cut(s)	1182, 2904
HindIII	AAGCTT	1 cut(s)	1412
HpaI	GTTAAC	1 cut(s)	2904
HpaII	CCGG	4 cut(s)	187, 1604, 3781, 3840
HphI	GGTGA	9 cut(s)	376, 599, 644, 668, 1208, 1360, 2201, 2651, 3326
HpyCH4IV	ACGT	1 cut(s)	1026
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3083, 3428, 3437, 3786
HpySE526I	ACGT	1 cut(s)	1026
Hsp92I	GRCGYC	2 cut(s)	2724, 3279
HspAI	GCGC	3 cut(s)	1696, 3279, 3417
KasI	GGCGCC	1 cut(s)	3278
KspAI	GTTAAC	1 cut(s)	2904
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	8 cut(s)	536, 823, 1381, 1537, 2470, 3083, 3832, 4089
LweI	GCATC	6 cut(s)	390, 1085, 1213, 1346, 2308, 2936
MaeII	ACGT	1 cut(s)	1026
MfeI	CAATTG	2 cut(s)	1154, 2837
MflI	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
MhlI	GDGCHC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
MlsI	TGGCCA	1 cut(s)	1034
MluNI	TGGCCA	1 cut(s)	1034
Mly113I	GGCGCC	1 cut(s)	3279
MlyI	GAGTC	7 cut(s)	382, 644, 1431, 2951, 2984, 3275, 4052
MmeI	TCCRAC	2 cut(s)	2421, 3485
Mox20I	TGGCCA	1 cut(s)	1034
Mph1103I	ATGCAT	1 cut(s)	1492
MscI	TGGCCA	1 cut(s)	1034
MslI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
Msp20I	TGGCCA	1 cut(s)	1034
MspA1I	CMGCKG	1 cut(s)	2245
MspCI	CTTAAG	2 cut(s)	935, 1090
MspI	CCGG	4 cut(s)	187, 1604, 3781, 3840
MspR9I	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
MunI	CAATTG	2 cut(s)	1154, 2837
Mva1269I	GAATGC	4 cut(s)	434, 1174, 1516, 2281
MvaI	CCWGG	4 cut(s)	271, 534, 1932, 3068
MwoI	GCNNNNNNNGC	9 cut(s)	1334, 1382, 1760, 2318, 2327, 3083, 3428, 3437, 3786
NarI	GGCGCC	1 cut(s)	3279
NciI	CCSGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	890
NheI	GCTAGC	1 cut(s)	3353
NlaIV	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3834, 3966
NmuCI	GTSAC	7 cut(s)	643, 705, 943, 1071, 2389, 2639, 4301
NsbI	TGCGCA	1 cut(s)	3418
NsiI	ATGCAT	1 cut(s)	1492
NspI	RCATGY	4 cut(s)	1449, 1664, 3526, 3608
OliI	CACNNNNGTG	2 cut(s)	712, 1191
PaeI	GCATGC	1 cut(s)	1664
PaeR7I	CTCGAG	1 cut(s)	2488
PagI	TCATGA	2 cut(s)	1203, 3889
PciI	ACATGT	2 cut(s)	3522, 3604
PciSI	GCTCTTC	1 cut(s)	476
PctI	GAATGC	4 cut(s)	434, 1174, 1516, 2281
PfeI	GAWTC	8 cut(s)	35, 296, 921, 1064, 2248, 2423, 3394, 4409
PflFI	GACNNNGTC	1 cut(s)	2510
PfoI	TCCNGGA	1 cut(s)	532
PleI	GAGTC	7 cut(s)	381, 643, 1431, 2951, 2984, 3274, 4052
PluTI	GGCGCC	1 cut(s)	3282
PpsI	GAGTC	7 cut(s)	381, 643, 1431, 2951, 2984, 3274, 4052
Ppu21I	YACGTR	1 cut(s)	1027
PpuMI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PscI	ACATGT	2 cut(s)	3522, 3604
PshAI	GACNNNNGTC	1 cut(s)	421
PsiI	TTATAA	2 cut(s)	564, 1463
Psp5II	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
Psp6I	CCWGG	4 cut(s)	269, 532, 1930, 3066
PspEI	GGTNACC	1 cut(s)	2639
PspGI	CCWGG	4 cut(s)	269, 532, 1930, 3066
PspN4I	GGNNCC	8 cut(s)	268, 1256, 1710, 1794, 2072, 3280, 3834, 3966
PspPI	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
PspPPI	RGGWCCY	4 cut(s)	959, 1708, 2167, 2506
PspXI	VCTCGAGB	1 cut(s)	2488
PstI	CTGCAG	3 cut(s)	958, 3439, 4408
PstNI	CAGNNNCTG	4 cut(s)	289, 305, 2707, 3269
PsuI	RGATCY	5 cut(s)	302, 2070, 2894, 3046, 3964
PsyI	GACNNNGTC	1 cut(s)	2510
RsaI	GTAC	9 cut(s)	254, 282, 1088, 1476, 1560, 2732, 3117, 3609, 4237
RsaNI	GTAC	9 cut(s)	253, 281, 1087, 1475, 1559, 2731, 3116, 3608, 4236
RseI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
SapI	GCTCTTC	1 cut(s)	476
Sau96I	GGNCC	7 cut(s)	64, 959, 1708, 2167, 2506, 4120, 4288
ScaI	AGTACT	1 cut(s)	3117
SchI	GAGTC	7 cut(s)	382, 644, 1431, 2951, 2984, 3275, 4052
ScrFI	CCNGG	5 cut(s)	187, 271, 534, 1932, 3068
SduI	GDGCHC	6 cut(s)	463, 2266, 2974, 3557, 3817, 4129
SfaNI	GCATC	6 cut(s)	390, 1085, 1213, 1346, 2308, 2936
SfcI	CTRYAG	6 cut(s)	954, 3182, 3435, 3558, 3879, 4404
SfoI	GGCGCC	1 cut(s)	3280
Sfr274I	CTCGAG	1 cut(s)	2488
SinI	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
SlaI	CTCGAG	1 cut(s)	2488
SmiMI	CAYNNNNRTG	3 cut(s)	712, 1191, 3158
SpeI	ACTAGT	1 cut(s)	647
SphI	GCATGC	1 cut(s)	1664
SsiI	CCGC	4 cut(s)	2245, 2742, 3313, 4050
SspDI	GGCGCC	1 cut(s)	3278
SspI	AATATT	2 cut(s)	2098, 3191
StyD4I	CCNGG	5 cut(s)	185, 269, 532, 1930, 3066
StyI	CCWWGG	2 cut(s)	1755, 3207
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	9 cut(s)	193, 413, 1166, 1717, 2489, 2858, 3730, 3858, 4179
TatI	WGTACW	6 cut(s)	252, 280, 1558, 2730, 3115, 4235
TauI	GCSGC	2 cut(s)	2744, 4053
TfiI	GAWTC	8 cut(s)	35, 296, 921, 1064, 2248, 2423, 3394, 4409
TseFI	GTSAC	7 cut(s)	643, 705, 943, 1071, 2389, 2639, 4301
Tsp45I	GTSAC	7 cut(s)	643, 705, 943, 1071, 2389, 2639, 4301
TspGWI	ACGGA	3 cut(s)	843, 1301, 4231
Tth111I	GACNNNGTC	1 cut(s)	2510
Vha464I	CTTAAG	2 cut(s)	935, 1090
VneI	GTGCAC	2 cut(s)	2970, 3553
VpaK11BI	GGWCC	5 cut(s)	959, 1708, 2167, 2506, 4288
XagI	CCTNNNNNAGG	2 cut(s)	1703, 3666
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	4 cut(s)	1449, 1664, 3526, 3608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3654
XhoI	CTCGAG	1 cut(s)	2488
XmiI	GTMKAC	1 cut(s)	3800
ZrmI	AGTACT	1 cut(s)	3117
Zsp2I	ATGCAT	1 cut(s)	1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.