Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Forward (+)

2554293 .. 2559734

Gene Structure 5442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4323 bp

ATGATGGAGGACTTATGGAGTGGATTTTGTGGGGAATCTGGAGGTTCTGAGAGTTTGAGTTTTCGGTTTCTGGTTCATCCTTCTTCATGCATTAATCATGCTTTGATAATTTTTCTAGACATAGTTCTTCTTGTGGTGCTCTTGTTCAGTATGTTTATCAAGTCATCAAAAAGAGTTCATGTTCCAGCACGATTTCTAGGCTTTTCGAGTTGGCAAATAGTCTCGGCCATTTTCAATGGCGCTCTTGGATTTGTGTACTTGTGCTTGGGAGCCTGGAATTTAGAAGAGAAGCTGAGGAATACACATACAGCTTTGCCTTTGAATTGGTGGTTACTTGGTCTTTTTCAAGGCTTCACATGGTTGGTTTTGAGCTTAACTCTAAGCATCAGGGTGCAGCAACTTCCAAGACAACCTTCAAGACTGCTGTGCATCCTTGCTTTTTTGTTCTCTGGAGTTGTCTTTGCTTTATCGCTCTTCGCTGTCATTTTCAGAAATGAAATGTCAGTTAAGATAGTACTAGATATCCTGACTTTCCCAGGAGCAGCATTGTTGCTGTTATGTGTTTTCAAGGGGTATAAGTATGAAGATGGTGATGAGATCAGTGACAATGGCCTTTATGCCCCTCTCAATGGTGAGTCCAATGGCATTAGTAAAGGTAATGATCATGCAACCCCATTTAGCAAAGCTGGATTGTTAAGTAAAATGTCATTTTGGTGGTTAAATTCATTGATGAAAAGAGGTAGGGAGAAAACTCTGGAGGATGAAGATATACCGAAGTTGCGCAAGGAAGATAGAGCAGAAAGTTGCTATTCGATGTTCTTGGAGCAACTGAGCAATCAGAAACAAATTGAGCCATCTTCCCAGCCATCAGTATTAAAGACTATAATCCTATGCCACTGGAAGGAGATTTTACTATCTGGTTTCTTTGCTTTGCTGAAGATACTCACTATTTGTGCTGGTCCTTTGCTTCTCAATGCCTTCATTTTGGTTGCGGAGGGAAATGAAAGTTTCGAGCACGAAGGTTATCTGTTAGCCGGAGCACTTTTTGTCTCGAAAACCATTGAATCCTTGTCACAAAGGCAGTGGTACTTCAGGTGCAGGCTTATTGGTTTGAAAGTTAGGTCTTTGCTGACAGCAGCCATTTACAAAAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCAGGTGTCGGCCTGGCTACATTTGCAGCCTTGGTGGTGATACTTTTGAGTGTGATTTGCAATGCTCCAGTTGCTAAGCTACAACATAAGTTCCAGAGTAAGCTTATGAAGGCTCAAGATGAAAGGCTCAAGGCTAGTTCTGAGGCTCTAGTGAACATGAAGGTCTTAAAGTTATATGCATGGGAAACACATTTCAAGAAGGCAATAGAAAAGTTAAGGAAGGAGGAGCACAAATGGTTATCTGCAATGCTGTTAAGAAGAGCATATAGTACTTATCTATTTTGGTCAACTCCTGTTTTGGTCTCTACTGCAACATTTGGGGCATGCTATTTTCTCAAAATTCCGTTACATGCGAACAACGTTTTCACTTTTATCTCAACTTTGAGACTTGTTCAGGACCCCATTCGAACCATACCTGATGTTTTTGCGGTTGTCATTCAAGCCAAGGTTGCATTTGGTCGTATTGTGAAATTCCTTGAGGCACCTGAGCTGCAAACTTCAAATGTCCGGAAGTGCAACATGAAGAATGTAGCTAACTCCATTGAAATTAAGTCAGCTAATTTTTCATGGGAAGAGAATTTATCGAAGTCCATACTGAGAAATATAAATTTAGAGGTTAGACCTGGTGAAAAGGTGGCTATATGTGGTGAAGTCGGCTCAGGCAAATCAAGTCTTCTAGCTGCAATTCTTGGAGAAATTCCAAATGTGCAAGGAAATATTCAAGTTTATGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGTCAGGAACTATACAAGAAAATATTCTCTTTGGTTCTTGTATGGATAGTCAGAGATATAGAGAGACGCTTGAGAGATGCTCACTAGTAAAGGACCTTGAGCTGCTTCCCTATGGTGACCTTACTGAAATAGGGGAGAGAGGGGTGAATCTAAGTGGAGGTCAGAAGCAGCGGATCCAACTTGCACGCGCTCTCTATCAGGATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCGCATACTGCCACAAACTTATTTAATGACTATGTAATGGAATCACTTTCAGGCAAGACAGTAATACTTGTGACCCATCAAGTTGATTTCCTGCCAGCATTTGATTTCGTTTTGTTGATGATAGATGGGGAGATCCTACAAGCAGCTCCTTATCAGCATCTATTGGCTTTAAGCCAAGAATTCCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTTCAGATGTCACTTCTGCTCAAAATTCTGGAATATCATCTACAGAGATTAAGAAGAGCTATGTTGAGAAGCCATTAAAAGAAAATAAAGGTGACCAATTGATTAAACTAGAAGAGAGAGAAACAGGAGACACAGGTTTTAAGCCATACATACTGTATTTGAAACAGAACAAAGGGTTCTTGTACTTCTCAATTGCCGTTTGTCTCCACTTCACTTTTATTATGAGTCAGATTGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCGAGTATTAGCACATTGCGGTTGCTTGTGGTTTACTTATCAATTGGATTCTCCGCAACATTTATTTTTCTATTTAGATCTCTTGCAGCAGTTGTTGGGGGTCTTGAGACATCAAAGTCGTTGTTCTCACAACTACTAAACTCCCTTTTTCGTGCACCCATGTCATTCTATGACTCAACACCTCTGGGAAGGATACTTAGTCGTGTTTCATCTGATCTGAGTATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGGAGCTACCATGAATGCCTATTGCAATCTTGGAGTATTGACTGTTGTTACCTGGCAAGTCTTGTTTGTCTCCATACCAATGGTCTATGTCGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAAGAGTTGATGAGGATCAATGGAACAACTAAGTCCTTTGTAGCAAACCATCTAGCGGAGTCTGTATCAGGAGCCATTACCATTAGAGCTTTCAATGAAGAAGAGCGCTTCTCGGCAAAGAGCTTCCACCTCATTGACACAAATGCTAGTCCTTATTTCCACAGCTTTTCCGCAAATGAGTGGTTAATCCAACGATTAGAGATAATCAGTGCATCAGTTCTTGCCTCTGCAGCACTTTGTATGGTTTTGCTTCCTCATGGAACCTTTACCTCTGGGTTTATTGGGATGGCACTTTCTTATGGTCTATCACTAAATGTGTCCTTGATCAACTCAATTCAGAACCAGTGCACTATAGCAAATTACATCATTTCTGTTGAAAGACTAAATCAATACATGCACATTCCAAGTGAAGCCCCAGAAGTAATAGAAGGAAACCGTCCACCAGCCAACTGGCCGGTTGTAGGAAAAGTGGAGATACAAAATTTGCAGATAAGATATAGGGATAACACACCACTTGTTCTTCGAGGGATTAGTTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTCATCGGTGCTCTATTTCGGCTGGTCGAGCCAACCAGAGGGAAGATCATAGTCGATGGCATTGACATCTGCACTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTTAATGGCACTGTCAGATACAATTTGGACCCCTTATCTCAACATTCAGACCAGAAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGAGAGGCTGTTGAGGAGAAGGAAAAAGGCTTAGACTCGTTAGTTGCGGATGATGGATCAAACTGGAGCATGGGGCAAAGGCAACTGTTCTGCCTCGGGCGCGCTCTTCTAAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACTGCATCCATCGACAATGCAACTGATACGATCCTGCAGAAGACTATAAGGACTGAGTTTGAAGCTTGTACAGTAATTACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACAATGGTTCTTGCCATTAGTGAAGGAAAGATAGTGGAGTATGATGAGCCAATGAGGTTGATGAATAGAGAAGGCTCGCTGTTTGGGCAGCTTGTCAAAGGAGTACTGGTCTCATCTCCAGTCTGCAGAATCTCATTGAATGAAACAATCTTTCTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1440

Amino Acids

160.56

Weight (kDa)

8.27

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 194	1.6e-77	ABCC10 N-terminal domain
ABC_membrane	PF00664	403 - 530	2.1e-10	ABC transporter transmembrane region
ABC_tran	PF00005	595 - 729	7.7e-23	ABC transporter
ABC_membrane	PF00664	871 - 1129	2.7e-24	ABC transporter transmembrane region
ABC_tran	PF00005	1203 - 1351	6.8e-25	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2812
Acc16I	TGCGCA	2 cut(s)	782, 2202
AccB1I	GGYRCC	1 cut(s)	1669
AccI	GTMKAC	1 cut(s)	3680
AccII	CGCG	2 cut(s)	2142, 4005
AccIII	TCCGGA	1 cut(s)	1695
AciI	CCGC	8 cut(s)	992, 1616, 2125, 2716, 2751, 3143, 3258, 3950
AclI	AACGTT	1 cut(s)	1548
AclWI	GGATC	9 cut(s)	1945, 1958, 2122, 2135, 2174, 2326, 3110, 3967, 4072
AcoI	YGGCCR	3 cut(s)	225, 3539, 3658
AcuI	CTGAAG	2 cut(s)	956, 1075
AfaI	GTAC	7 cut(s)	257, 516, 1088, 1459, 2612, 4117, 4266
AfeI	AGCGCT	1 cut(s)	3194
AfiI	CCNNNNNNNGG	5 cut(s)	629, 901, 3142, 3548, 3722
AhlI	ACTAGT	1 cut(s)	2038
AjnI	CCWGG	6 cut(s)	272, 535, 1200, 1810, 2382, 3011
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AleI	CACNNNNGTG	1 cut(s)	1191
Alw21I	GWGCWC	7 cut(s)	141, 1017, 1042, 1419, 2854, 3437, 3697
Alw44I	GTGCAC	2 cut(s)	2850, 3433
AlwI	GGATC	9 cut(s)	1945, 1958, 2122, 2135, 2174, 2326, 3110, 3967, 4072
Ama87I	CYCGRG	1 cut(s)	3998
Aor13HI	TCCGGA	1 cut(s)	1695
Aor51HI	AGCGCT	1 cut(s)	3194
AoxI	GGCC	5 cut(s)	225, 610, 1198, 3539, 3658
ApaLI	GTGCAC	2 cut(s)	2850, 3433
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	1977
AspLEI	GCGC	7 cut(s)	242, 783, 2144, 2203, 3195, 4005, 4007
AspS9I	GGNCC	5 cut(s)	959, 1585, 2047, 2386, 3844
AsuHPI	GGTGA	8 cut(s)	602, 644, 1237, 1826, 1847, 2081, 2110, 2531
AsuII	TTCGAA	1 cut(s)	1594
AvaI	CYCGRG	1 cut(s)	3998
AvaII	GGWCC	5 cut(s)	959, 1585, 2047, 2386, 3844
BaeGI	GKGCMC	2 cut(s)	2854, 3437
BamHI	GGATCC	2 cut(s)	1950, 2127
BanI	GGYRCC	1 cut(s)	1669
BbsI	GAAGAC	2 cut(s)	1853, 4094
Bbv12I	GWGCWC	7 cut(s)	141, 1017, 1042, 1419, 2854, 3437, 3697
BbvCI	CCTCAGC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	2609
BciT130I	CCWGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
BciVI	GTATCC	2 cut(s)	2883, 4134
BclI	TGATCA	2 cut(s)	661, 3411
BcuI	ACTAGT	1 cut(s)	2038
BfmI	CTRYAG	7 cut(s)	2469, 3062, 3315, 3438, 3759, 4082, 4285
BfoI	RGCGCY	2 cut(s)	243, 3196
BfuI	GTATCC	2 cut(s)	2883, 4134
BglI	GCCNNNNNGGC	1 cut(s)	3666
BglII	AGATCT	2 cut(s)	2774, 2926
BlpI	GCTNAGC	1 cut(s)	1263
BmcAI	AGTACT	3 cut(s)	516, 1459, 4266
Bme1390I	CCNGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
Bme18I	GGWCC	5 cut(s)	959, 1585, 2047, 2386, 3844
BmeT110I	CYCGRG	1 cut(s)	3998
BmgT120I	GGNCC	5 cut(s)	959, 1585, 2047, 2386, 3844
BmiI	GGNNCC	8 cut(s)	271, 1587, 1671, 1952, 2129, 3160, 3349, 3846
BmrFI	CCNGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
BmsI	GCATC	8 cut(s)	393, 438, 2021, 2146, 2188, 2365, 3308, 4061
BpiI	GAAGAC	2 cut(s)	1853, 4094
BplI	GAGNNNNNCTC	6 cut(s)	361, 393, 2018, 2050, 3182, 3214
BpmI	CTGGAG	6 cut(s)	60, 471, 776, 1239, 3988, 4263
Bpu10I	CCTNAGC	3 cut(s)	293, 1674, 1846
Bpu1102I	GCTNAGC	1 cut(s)	1263
Bpu14I	TTCGAA	1 cut(s)	1594
BpuEI	CTTGAG	7 cut(s)	1287, 1301, 1685, 2045, 2072, 2822, 3786
BsaBI	GATNNNNATC	2 cut(s)	2166, 3101
BsaI	GGTCTC	2 cut(s)	1495, 4276
BsaJI	CCNNGG	4 cut(s)	535, 1218, 1632, 3997
BsaWI	WCCGGW	1 cut(s)	1695
BsaXI	ACNNNNNCTCC	2 cut(s)	4254, 4284
Bsc4I	CCNNNNNNNGG	5 cut(s)	629, 901, 3142, 3548, 3722
Bse118I	RCCGGY	1 cut(s)	3541
Bse1I	ACTGG	8 cut(s)	902, 1256, 1954, 3430, 3542, 3971, 4272, 4280
Bse3DI	GCAATG	3 cut(s)	1255, 1440, 2711
Bse8I	GATNNNNATC	2 cut(s)	2166, 3101
BseAI	TCCGGA	1 cut(s)	1695
BseBI	CCWGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
BseDI	CCNNGG	4 cut(s)	535, 1218, 1632, 3997
BseGI	GGATG	9 cut(s)	76, 429, 766, 2161, 2182, 2682, 3378, 3958, 4052
BseJI	GATNNNNATC	2 cut(s)	2166, 3101
BseLI	CCNNNNNNNGG	5 cut(s)	629, 901, 3142, 3548, 3722
BseMI	GCAATG	3 cut(s)	1255, 1440, 2711
BseNI	ACTGG	8 cut(s)	902, 1256, 1954, 3430, 3542, 3971, 4272, 4280
BsePI	GCGCGC	1 cut(s)	4003
BseRI	GAGGAG	2 cut(s)	1427, 3932
BseSI	GKGCMC	2 cut(s)	2854, 3437
BseYI	CCCAGC	1 cut(s)	861
BsgI	GTGCAG	3 cut(s)	413, 1117, 3739
Bsh1236I	CGCG	2 cut(s)	2142, 4005
BshFI	GGCC	5 cut(s)	227, 612, 1200, 3541, 3660
BshNI	GGYRCC	1 cut(s)	1669
BsiHKAI	GWGCWC	7 cut(s)	141, 1017, 1042, 1419, 2854, 3437, 3697
BsiHKCI	CYCGRG	1 cut(s)	3998
BsiSI	CCGG	4 cut(s)	1035, 1696, 3542, 3661
BslI	CCNNNNNNNGG	5 cut(s)	629, 901, 3142, 3548, 3722
BsmBI	CGTCTC	1 cut(s)	2012
BsmI	GAATGC	1 cut(s)	2980
BsnI	GGCC	5 cut(s)	227, 612, 1200, 3541, 3660
Bso31I	GGTCTC	2 cut(s)	1495, 4276
BsoBI	CYCGRG	1 cut(s)	3998
Bsp119I	TTCGAA	1 cut(s)	1594
Bsp1286I	GDGCHC	7 cut(s)	141, 1017, 1042, 1419, 2854, 3437, 3697
Bsp13I	TCCGGA	1 cut(s)	1695
Bsp1407I	TGTACA	1 cut(s)	4115
Bsp1720I	GCTNAGC	1 cut(s)	1263
BspACI	CCGC	8 cut(s)	992, 1616, 2125, 2716, 2751, 3143, 3258, 3950
BspANI	GGCC	5 cut(s)	227, 612, 1200, 3541, 3660
BspEI	TCCGGA	1 cut(s)	1695
BspFNI	CGCG	2 cut(s)	2142, 4005
BspHI	TCATGA	1 cut(s)	3769
BspLI	GGNNCC	8 cut(s)	271, 1587, 1671, 1952, 2129, 3160, 3349, 3846
BspMAI	CTGCAG	3 cut(s)	3319, 4086, 4289
BspPI	GGATC	9 cut(s)	1945, 1958, 2122, 2135, 2174, 2326, 3110, 3967, 4072
BspQI	GCTCTTC	5 cut(s)	479, 1441, 2477, 3183, 4014
BspT104I	TTCGAA	1 cut(s)	1594
BspT107I	GGYRCC	1 cut(s)	1669
BspTNI	GGTCTC	2 cut(s)	1495, 4276
BsrDI	GCAATG	3 cut(s)	1255, 1440, 2711
BsrFI	RCCGGY	1 cut(s)	3541
BsrGI	TGTACA	1 cut(s)	4115
BsrI	ACTGG	8 cut(s)	902, 1256, 1954, 3430, 3542, 3971, 4272, 4280
BssAI	RCCGGY	1 cut(s)	3541
BssECI	CCNNGG	4 cut(s)	535, 1218, 1632, 3997
BssHII	GCGCGC	1 cut(s)	4003
BssT1I	CCWWGG	2 cut(s)	1218, 1632
Bst2UI	CCWGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
Bst4CI	ACNGT	9 cut(s)	2260, 2583, 3004, 3524, 3829, 3990, 4120, 4129, 4150
Bst6I	CTCTTC	8 cut(s)	279, 479, 1441, 1755, 2477, 2535, 3183, 4014
BstAUI	TGTACA	1 cut(s)	4115
BstBI	TTCGAA	1 cut(s)	1594
BstC8I	GCNNGC	6 cut(s)	1100, 1513, 2140, 2295, 4005, 4238
BstEII	GGTNACC	2 cut(s)	2069, 2519
BstF5I	GGATG	9 cut(s)	76, 429, 766, 2161, 2182, 2682, 3378, 3958, 4052
BstFNI	CGCG	2 cut(s)	2142, 4005
BstH2I	RGCGCY	2 cut(s)	243, 3196
BstHHI	GCGC	7 cut(s)	242, 783, 2144, 2203, 3195, 4005, 4007
BstNI	CCWGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
BstNSI	RCATGY	3 cut(s)	1515, 1541, 3484
BstPI	GGTNACC	2 cut(s)	2069, 2519
BstSCI	CCNGG	6 cut(s)	272, 535, 1200, 1810, 2382, 3011
BstSFI	CTRYAG	7 cut(s)	2469, 3062, 3315, 3438, 3759, 4082, 4285
BstSLI	GKGCMC	2 cut(s)	2854, 3437
BstUI	CGCG	2 cut(s)	2142, 4005
BstV2I	GAAGAC	2 cut(s)	1853, 4094
BstX2I	RGATCY	5 cut(s)	1950, 2127, 2331, 2774, 2926
BstXI	CCANNNNNNTGG	2 cut(s)	3040, 3537
BstYI	RGATCY	5 cut(s)	1950, 2127, 2331, 2774, 2926
BsuI	GTATCC	2 cut(s)	2883, 4134
BsuRI	GGCC	5 cut(s)	227, 612, 1200, 3541, 3660
BtsCI	GGATG	9 cut(s)	76, 429, 766, 2161, 2182, 2682, 3378, 3958, 4052
BtsI	GCAGTG	3 cut(s)	1088, 3081, 3676
BtsIMutI	CAGTG	9 cut(s)	607, 895, 1088, 2194, 3081, 3301, 3437, 3676, 3825
Cac8I	GCNNGC	6 cut(s)	1100, 1513, 2140, 2295, 4005, 4238
CciI	TCATGA	1 cut(s)	3769
CfoI	GCGC	7 cut(s)	242, 783, 2144, 2203, 3195, 4005, 4007
Cfr10I	RCCGGY	1 cut(s)	3541
Cfr13I	GGNCC	5 cut(s)	959, 1585, 2047, 2386, 3844
CseI	GACGC	1 cut(s)	2029
CsiI	ACCWGGT	1 cut(s)	1810
Csp6I	GTAC	7 cut(s)	256, 515, 1087, 1458, 2611, 4116, 4265
CspCI	CAANNNNNGTGG	2 cut(s)	1064, 1099
CviQI	GTAC	7 cut(s)	256, 515, 1087, 1458, 2611, 4116, 4265
DrdI	GACNNNNNNGTC	1 cut(s)	2812
DseDI	GACNNNNNNGTC	1 cut(s)	2812
EaeI	YGGCCR	3 cut(s)	225, 3539, 3658
Eam1104I	CTCTTC	8 cut(s)	279, 479, 1441, 1755, 2477, 2535, 3183, 4014
EarI	CTCTTC	8 cut(s)	279, 479, 1441, 1755, 2477, 2535, 3183, 4014
Eco130I	CCWWGG	2 cut(s)	1218, 1632
Eco31I	GGTCTC	2 cut(s)	1495, 4276
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	5 cut(s)	959, 1585, 2047, 2386, 3844
Eco47III	AGCGCT	1 cut(s)	3194
Eco57I	CTGAAG	2 cut(s)	956, 1075
Eco88I	CYCGRG	1 cut(s)	3998
Eco91I	GGTNACC	2 cut(s)	2069, 2519
EcoO109I	RGGNCCY	3 cut(s)	1585, 2047, 2386
EcoO65I	GGTNACC	2 cut(s)	2069, 2519
EcoRI	GAATTC	1 cut(s)	2378
EcoRII	CCWGG	6 cut(s)	272, 535, 1200, 1810, 2382, 3011
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	1218, 1632
EcoT22I	ATGCAT	2 cut(s)	92, 1369
ErhI	CCWWGG	2 cut(s)	1218, 1632
Esp3I	CGTCTC	1 cut(s)	2012
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FbaI	TGATCA	2 cut(s)	661, 3411
FblI	GTMKAC	1 cut(s)	3680
FokI	GGATG	9 cut(s)	63, 416, 773, 2168, 2189, 2689, 3385, 3965, 4039
FspAI	RTGCGCAY	1 cut(s)	2202
FspI	TGCGCA	2 cut(s)	782, 2202
GlaI	GCGC	7 cut(s)	241, 782, 2143, 2202, 3194, 4004, 4006
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	6 cut(s)	60, 471, 776, 1239, 3988, 4263
HaeII	RGCGCY	2 cut(s)	243, 3196
HaeIII	GGCC	5 cut(s)	227, 612, 1200, 3541, 3660
HapII	CCGG	4 cut(s)	1035, 1696, 3542, 3661
HgaI	GACGC	1 cut(s)	2029
HhaI	GCGC	7 cut(s)	242, 783, 2144, 2203, 3195, 4005, 4007
Hin6I	GCGC	7 cut(s)	240, 781, 2142, 2201, 3193, 4003, 4005
HinP1I	GCGC	7 cut(s)	240, 781, 2142, 2201, 3193, 4003, 4005
HincII	GTYRAC	2 cut(s)	1182, 1476
HindII	GTYRAC	2 cut(s)	1182, 1476
HindIII	AAGCTT	2 cut(s)	1289, 4110
HpaII	CCGG	4 cut(s)	1035, 1696, 3542, 3661
HphI	GGTGA	8 cut(s)	602, 644, 1237, 1826, 1847, 2081, 2110, 2531
Hpy166II	GTNNAC	9 cut(s)	256, 1182, 1342, 1476, 2731, 2852, 3435, 3527, 3681
Hpy8I	GTNNAC	9 cut(s)	256, 1182, 1342, 1476, 2731, 2852, 3435, 3527, 3681
HpyCH4III	ACNGT	9 cut(s)	2260, 2583, 3004, 3524, 3829, 3990, 4120, 4129, 4150
HpyCH4IV	ACGT	1 cut(s)	1548
HpySE526I	ACGT	1 cut(s)	1548
HspAI	GCGC	7 cut(s)	240, 781, 2142, 2201, 3193, 4003, 4005
Kpn2I	TCCGGA	1 cut(s)	1695
Ksp22I	TGATCA	2 cut(s)	661, 3411
LguI	GCTCTTC	5 cut(s)	479, 1441, 2477, 3183, 4014
LweI	GCATC	8 cut(s)	393, 438, 2021, 2146, 2188, 2365, 3308, 4061
MabI	ACCWGGT	1 cut(s)	1810
MaeII	ACGT	1 cut(s)	1548
MaeIII	GTNAC	9 cut(s)	330, 602, 1071, 1533, 2069, 2269, 2437, 2519, 3007
MfeI	CAATTG	4 cut(s)	1154, 2525, 2619, 2739
MflI	RGATCY	5 cut(s)	1950, 2127, 2331, 2774, 2926
MhlI	GDGCHC	7 cut(s)	141, 1017, 1042, 1419, 2854, 3437, 3697
MlyI	GAGTC	5 cut(s)	644, 2662, 2864, 3155, 3932
MmeI	TCCRAC	2 cut(s)	2155, 3301
Mph1103I	ATGCAT	2 cut(s)	92, 1369
MroI	TCCGGA	1 cut(s)	1695
MroXI	GAANNNNTTC	1 cut(s)	1977
MslI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3038
MspA1I	CMGCKG	1 cut(s)	2125
MspI	CCGG	4 cut(s)	1035, 1696, 3542, 3661
MspR9I	CCNGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
MunI	CAATTG	4 cut(s)	1154, 2525, 2619, 2739
Mva1269I	GAATGC	1 cut(s)	2980
MvaI	CCWGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
MvnI	CGCG	2 cut(s)	2142, 4005
NlaIV	GGNNCC	8 cut(s)	271, 1587, 1671, 1952, 2129, 3160, 3349, 3846
NmeAIII	GCCGAG	2 cut(s)	203, 3179
NmuCI	GTSAC	6 cut(s)	602, 1071, 2069, 2269, 2437, 2519
NsbI	TGCGCA	2 cut(s)	782, 2202
NsiI	ATGCAT	2 cut(s)	92, 1369
NspI	RCATGY	3 cut(s)	1515, 1541, 3484
NspV	TTCGAA	1 cut(s)	1594
OliI	CACNNNNGTG	1 cut(s)	1191
PaeI	GCATGC	1 cut(s)	1515
PagI	TCATGA	1 cut(s)	3769
PauI	GCGCGC	1 cut(s)	4003
PciSI	GCTCTTC	5 cut(s)	479, 1441, 2477, 3183, 4014
PctI	GAATGC	1 cut(s)	2980
PdmI	GAANNNNTTC	1 cut(s)	1977
PfeI	GAWTC	6 cut(s)	35, 1064, 2101, 2240, 2745, 4290
PflFI	GACNNNGTC	1 cut(s)	2390
PfoI	TCCNGGA	1 cut(s)	2382
PleI	GAGTC	5 cut(s)	643, 2661, 2864, 3154, 3932
PpsI	GAGTC	5 cut(s)	643, 2661, 2864, 3154, 3932
PpuMI	RGGWCCY	3 cut(s)	1585, 2047, 2386
PshBI	ATTAAT	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	1548
Psp5II	RGGWCCY	3 cut(s)	1585, 2047, 2386
Psp6I	CCWGG	6 cut(s)	272, 535, 1200, 1810, 2382, 3011
PspEI	GGTNACC	2 cut(s)	2069, 2519
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	6 cut(s)	272, 535, 1200, 1810, 2382, 3011
PspN4I	GGNNCC	8 cut(s)	271, 1587, 1671, 1952, 2129, 3160, 3349, 3846
PspPI	GGNCC	5 cut(s)	959, 1585, 2047, 2386, 3844
PspPPI	RGGWCCY	3 cut(s)	1585, 2047, 2386
PstI	CTGCAG	3 cut(s)	3319, 4086, 4289
PsuI	RGATCY	5 cut(s)	1950, 2127, 2331, 2774, 2926
PsyI	GACNNNGTC	1 cut(s)	2390
PteI	GCGCGC	1 cut(s)	4003
RsaI	GTAC	7 cut(s)	257, 516, 1088, 1459, 2612, 4117, 4266
RsaNI	GTAC	7 cut(s)	256, 515, 1087, 1458, 2611, 4116, 4265
RseI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3038
SapI	GCTCTTC	5 cut(s)	479, 1441, 2477, 3183, 4014
Sau96I	GGNCC	5 cut(s)	959, 1585, 2047, 2386, 3844
ScaI	AGTACT	3 cut(s)	516, 1459, 4266
SchI	GAGTC	5 cut(s)	644, 2662, 2864, 3155, 3932
ScrFI	CCNGG	6 cut(s)	274, 537, 1202, 1812, 2384, 3013
SduI	GDGCHC	7 cut(s)	141, 1017, 1042, 1419, 2854, 3437, 3697
SexAI	ACCWGGT	1 cut(s)	1810
SfaNI	GCATC	8 cut(s)	393, 438, 2021, 2146, 2188, 2365, 3308, 4061
SfcI	CTRYAG	7 cut(s)	2469, 3062, 3315, 3438, 3759, 4082, 4285
SfuI	TTCGAA	1 cut(s)	1594
SinI	GGWCC	5 cut(s)	959, 1585, 2047, 2386, 3844
SmiMI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3038
SmlI	CTYRAG	7 cut(s)	1302, 1316, 1664, 2024, 2051, 2801, 3801
SmoI	CTYRAG	7 cut(s)	1302, 1316, 1664, 2024, 2051, 2801, 3801
SpeI	ACTAGT	1 cut(s)	2038
SphI	GCATGC	1 cut(s)	1515
SsiI	CCGC	8 cut(s)	992, 1616, 2125, 2716, 2751, 3143, 3258, 3950
SspI	AATATT	3 cut(s)	1906, 1978, 3071
StyD4I	CCNGG	6 cut(s)	272, 535, 1200, 1810, 2382, 3011
StyI	CCWWGG	2 cut(s)	1218, 1632
TaaI	ACNGT	9 cut(s)	2260, 2583, 3004, 3524, 3829, 3990, 4120, 4129, 4150
TaiI	ACGT	1 cut(s)	1551
TatI	WGTACW	6 cut(s)	255, 514, 1457, 2610, 4115, 4264
TfiI	GAWTC	6 cut(s)	35, 1064, 2101, 2240, 2745, 4290
TscAI	CASTG	9 cut(s)	607, 902, 1088, 2194, 3088, 3301, 3437, 3676, 3832
TseFI	GTSAC	6 cut(s)	602, 1071, 2069, 2269, 2437, 2519
Tsp45I	GTSAC	6 cut(s)	602, 1071, 2069, 2269, 2437, 2519
TspGWI	ACGGA	1 cut(s)	1521
TspRI	CASTG	9 cut(s)	607, 902, 1088, 2194, 3088, 3301, 3437, 3676, 3832
Tth111I	GACNNNGTC	1 cut(s)	2390
VneI	GTGCAC	2 cut(s)	2850, 3433
VpaK11BI	GGWCC	5 cut(s)	959, 1585, 2047, 2386, 3844
VspI	ATTAAT	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	3 cut(s)	1515, 1541, 3484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3534
XmiI	GTMKAC	1 cut(s)	3680
XmnI	GAANNNNTTC	1 cut(s)	1977
ZrmI	AGTACT	3 cut(s)	516, 1459, 4266
Zsp2I	ATGCAT	2 cut(s)	92, 1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.