Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002769

Physical Location & Seq

Genomic Coordinates Reverse (-)

63923297 .. 63929921

Gene Structure 6625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG426200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4410 bp

ATGATGGAGGACTTATGGAGTGGATTTTGTGGGGAATCTGGAGGTTCTGAGAGTTTGAGTTTTCGGTTTCTGGTTCATCCTTCTTCATGCATTAATCACGCTTTGATAATTTTCCTAGACATAGTTCTTCTTGTGGTGCTCTTGTTCAGTATGTTTATCAAGTCATCAAAAAGAGTTCATGTTCCAGCACGATTTCTAGGCTTTTCGAGTTGGCAAATAGTCTCGGCCATTTTCAATGGCGGTCTTGGATTTGTGTACTTGTGCTTGGGAGCCTGGAATTTAGAAGAGAAGCTGAGGAATACACATACAGCTTTGCCTTTGAATTGCTGGTTACTTGGTCTTTTTCAAGGCTTCACATGGTTGGTTTTGAGCTTAACTCTAAGCATCAGGGTGCAGCAACTTCCAAGACAACCTTCAAGACTGTTGTGCATCCTTGCTTTTTTGTTCTCTGGAGTTGTCTTTGCTCTATCGCTCTTCGCTGTCATTTTCAGAAATGAAATGTCATTTAAGATAGTACTAGATATCCTGACTTTCCCAGGAGCAGCATTGTTGCTGTTATGTGTTTTCAAGGGGTATAAGTATGAAGATGGTGATGAGATCAGTGACAATGGCCTTTATGCCCCTCTCAATGGTGAGTCCAATGGTATTAGTAAAGGTAATGATCATGCAACCCCATTTAGCAAAGCTGGATTGTTAAGTAAAATGTCATTTTGGTGGTTAAATTCATTGATGAAAAGAGGTAGGGAGAAAACTCTGGAGGATGAAGATATACCGAAGTTGCGCAAGGAAGATAGAGCAGAAAGTTGCTATTCGATGTTCTTGGAGCAACTGAGCAAGCAGAAACAAATTGAGCCATCTTCCCAGCCATCAGTATTAAAGACTATAATCCTATGCCACTGGAAGGAGATTTTACTATCTGGTTTCTTTGCTTTGCTAAAGATACTTACTATTTGTGCTGGTCCTTTGCTTCTCAATGCCTTCATTTTGGTTGCGGAGGGAAATGAAAGTTTCGAGCACGAAGGTTATCTGTTAGCCGGAGCACTTTTTGTCTCGAAAACCATTGAATCCTTGTCACAAAGGCAGTGGTACTTCAGGTGCAGGCTTATTGGTTTGAAAGTTAGGTCTTTCCTGACAGCAGCCATTTACAAAAAGCAATTGAGATTATCTAATGCTGCTAAGTTGACACACTCAGGTGGTGAGATCATGAATTATGTTACTGTGGATGCTTATAGGATTGGAGAGTTTCCATTTTGGTTCCATCAGACTTGGACTACTAGCGTCCAGCTCTGTTTTTCTTTGGTAATTCTTTTCCGTGCAGTCGGCCTAGCTACATTTGCAGCCTTGGTGGTGATACTTTTGAGTGTGATTTGCAATGCTCCAGTTGCTAAGCTACAACATAAGTTCCAGAGTAAGCTTATGAAGGCTCAAGATGAAAGGCTCAAGGCTAGTTCTGAGGCTCTAGTGAACATGAAGGTCTTAAAGTTATATGCATGGGAAACACATTTCAAGAAGGCAATAGAAAAGTTAAGGAAGGAGGAGCACAAATGGTTATCTGCAATGCTGTTAAGAAGAGCATATAGTACTTATCTATTTTGGTCAACTCCTGTTTTGGTCTCTACTGCAACATTTGGGGCATGCTATTTTCTCAAAATTCCGTTACATGCGAACAACGTTTTCACTTTTATCTCAACTTTGAGACTTGTTCAGGACCCCATTCGAACCATACCTGATGTTTTTGCGGTTGTCATTCAAGCCAAGGTTGCATTTGGTCGTATTGTGAAATTCCTTGAGGCACCTGAGCTGCAAACTTCAAATGTCCGGAAGTGCAACATGAAGAATGTAGCTAACTCCATTGAAATTAAGTCAGCTAATTTTTCATGGGAAGAGAATTTATCGAAGTCCATACTGAGAAATATAAATTTAGAGGTTAGACTTGGTGAAAAGGTGGCTATATGTGGTGAAGTCGGCTCAGGCAAATCAAGTCTTCTAGCTGCAATTCTTGGAGAAATTCCAAATGTGCAAGGAAATATTCAAGTTTATGGGAAGATTGCCTATGTTTCTCAAACAGCATGGATCCAGTCAGGAACTATACAAGAAAATATTCTCTTTGGTTCTTGTATGGATAGTCAGAGATACCGAGAGACTCTTGAGAGATGCTCACTAGTAAAGGACCTTGAGCTGCTTCCCTATGATGACCTTACTGAAATAGGGGAGAGAGGGGTGAATCTAAGTGGAGGTCAGAAGCAGCGGATCCAACTTGCACGCGCTCTCTATCAGGATGCTGATATATATCTCTTGGATGATCCATTCAGTGCCGTTGATGCGCATACTGCCACAAACTTATTTAATGAATATGTAATGGAAGCACTTTCAGGCAAGACAGTACTACTTGTGACCCATCAAGTTGATTTCCTGCCTGCATTTGATTTCGTTTTGTTGATGATGGATGGGGAGATCCTACAAGCAGCTCCTTATCAGCATCTGTTGGCTTTAAGCCAAGAATTCCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCCGAAAGGCTTTCAGATGTCACTTCTGCTCAAAATTCTGGAATATCATCTAGAGAGATTAAGAAGAGCTATGTTGAGAAGCCATTAAAAGAAAACAAAGGTGACCAATTGATTAAACTAGAAGAGAGAGAAACAGGAGACACAGGTTTTAAGCCATACATACTGTATCTGAAACAGAACAAAGGGTTCTTGTACTTCTCAATTGCCGTTTGTCTCCACTTCATTTTTATTATGAGTCAGATTGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCGAGTATTAGCACATTGCGGTTGCTTGTGGTTTACTTATCGATTGGATTCTCCGCAACATTTATTTTTCTGTTTAGATCTCTTGCAGCAGTTGTTGGGGGTCTTGAGACATCAAAGTCGTTGTTCTCACAACTACTAAACTCCCTTTTTCGTGCACCCATGTCATTCTATGACTCAACACCTCTGGGAAGGATACTTAGTCGTGTTTCATCTGATCTGAGTATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGGAGCTACCATGAATGCCTATTGCAATCTTGGAGTATTGACTGTTGTTACCTGGCAAGTCTTGTTTGTCTCCATACCAATGGTCTATGTCGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAAGAGTTGATGAGGATCAATGGAACAACTAAGTCCTTTGTAGCAAACCATCTAGCCGAGTCTGTATCAGGAGCCGTTACCATTAGAGCATTCAGTGAAGAAGAGCGCTTCTCAGCAAAGAGCTTTCACCTCATTGACACAAATGCTAGTCCTTATTTCCACAGCTTTTCCGCAAATGAGTGGTTAATCCAACGGTTAGAGATAATCAGTGCATCGGTTCTTGCCTCTGCAGCACTTTGTATGGTTTTGCTTCCTCATGGAACCTTTACCTCTGGGTTTATTGGGATGGCACTTTCTTATGGTCTATCACTAAATGTGTCCTTGATCAACTCAATTCAGAACCAGTGCACTATAGCAAATTACATCATTTCTGTTGAAAGACTAAATCAATACATGCACATTCCAAGTGAAGCCCCAGAAGTAATAGAAGGAAACCGTCCACCGGCCAACTGGCCGGTTGTAGGAAAAGTGGAGATACAAAATTTGCAGATAAGATATAGGGATGACACACCACTTGTTCTTCGAGGGATCAATTGTGTTTTTGAAGGAGGACATAAGATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTCATCGGTGCTTTATTTCGGCTGGTCGAGCCAACTGGAGGGAAGATCATAGTTGATGGCATTGACATCTGCACTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACCCTCTTTAATGGCACTGTCAGATACAATTTGGACCCCTTATCTCAACATTCAGACCAGAAAATATGGGAGGTTCTTGGGAAGTGTCAGCTTCGAGAGGCGGTTGAGGAGAAAGAAAAAGGCTTAGACTCGTTAGTTGTGGATGATGGATCAAACTGGAGCATGGGGCAAAGGCAACTGTTCTGCCTCGGGCGCGCTCTTCTAAGGAGAAGTCGGGTATTGGTGCTTGATGAAGCAACTGCATCCATCGACAATGCAACTGATACGATCCTGCAGAAGACTATAAGGACTGAGTTTGAAGCTTGTACAGTAATTACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACAATGGTTCTTGCCATTAGTGATGGTGAGTTAATTCGGTTTAATGTTCATCTAAGAAAATCGATACCTTTGCATCCGTTAGTGTTAATGAAGCAAAAGTTTTCCATTGTTTTGCAGGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1469

Amino Acids

164.33

Weight (kDa)

8.38

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	2 - 194	3.7e-76	ABCC10 N-terminal domain
ABC_membrane	PF00664	304 - 571	1.8e-23	ABC transporter transmembrane region
ABC_tran	PF00005	636 - 770	2.3e-22	ABC transporter
ABC_membrane	PF00664	911 - 1170	1.2e-23	ABC transporter transmembrane region
ABC_tran	PF00005	1244 - 1392	1.7e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59140
fragaria_vesca	FvH4_3g44221 FvH4_3g44230 FvH4_3g44230 FvH4_7g30860 FvH4_7g30860 FvH4_7g30860 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870 FvH4_7g30870
malus_domestica	MD01G1213600.v1.1
prunus_persica	Prupe.2G305800_v2.0.a1 Prupe.2G305800_v2.0.a1
pyrus_communis	pycom01g22440 pycom07g25750
rosa_chinensis	RchiOBHm_Chr1g0379791 RchiOBHm_Chr1g0379831 RchiOBHm_Chr1g0379841
rosa_laevigata	RLG00000026355 RLG00000026356 RLG00000026359 RLG00000026360
rosa_multiflora	Rmu_sc0014259.1_g000008 Rmu_sc0014259.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279900 Rroxscaffold_4G00279910
rosa_rugosa	Rorug01G0415300
rosa_samantha	Rh1AG438800 Rh1AG439300 Rh1AG439400 Rh1BG395300 Rh1BG395400 Rh1DG426200 Rh1DG426300
rosa_wichuraiana	Rw1G038220 Rw1G038240 Rw1G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2935
Acc16I	TGCGCA	2 cut(s)	782, 2325
AccB1I	GGYRCC	1 cut(s)	1792
AccI	GTMKAC	1 cut(s)	3803
AccII	CGCG	2 cut(s)	2265, 4128
AccIII	TCCGGA	1 cut(s)	1818
AciI	CCGC	8 cut(s)	240, 992, 1739, 2248, 2839, 2874, 3381, 4034
AclI	AACGTT	1 cut(s)	1671
AcoI	YGGCCR	4 cut(s)	225, 3654, 3662, 3781
AcuI	CTGAAG	1 cut(s)	1075
AfaI	GTAC	7 cut(s)	257, 516, 1088, 1582, 2385, 2735, 4240
AfeI	AGCGCT	1 cut(s)	3317
AfiI	CCNNNNNNNGG	5 cut(s)	629, 901, 3652, 3671, 3845
AhlI	ACTAGT	1 cut(s)	2161
AjnI	CCWGG	4 cut(s)	272, 535, 2505, 3134
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AleI	CACNNNNGTG	1 cut(s)	1191
Alw21I	GWGCWC	6 cut(s)	141, 1017, 1042, 1542, 2977, 3560
Alw26I	GTCTC	9 cut(s)	226, 1054, 1618, 1690, 2135, 2673, 2759, 2921, 3157
Alw44I	GTGCAC	2 cut(s)	2973, 3556
AlwNI	CAGNNNCTG	1 cut(s)	2482
Ama87I	CYCGRG	1 cut(s)	4121
Aor13HI	TCCGGA	1 cut(s)	1818
Aor51HI	AGCGCT	1 cut(s)	3317
AoxI	GGCC	6 cut(s)	225, 610, 1321, 3654, 3662, 3781
ApaLI	GTGCAC	2 cut(s)	2973, 3556
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	2100
AspLEI	GCGC	6 cut(s)	783, 2267, 2326, 3318, 4128, 4130
AspS9I	GGNCC	5 cut(s)	959, 1708, 2170, 2509, 3967
AsuII	TTCGAA	1 cut(s)	1717
AvaI	CYCGRG	1 cut(s)	4121
AvaII	GGWCC	5 cut(s)	959, 1708, 2170, 2509, 3967
BaeGI	GKGCMC	2 cut(s)	2977, 3560
BamHI	GGATCC	2 cut(s)	2073, 2250
BanI	GGYRCC	1 cut(s)	1792
BbsI	GAAGAC	2 cut(s)	1976, 4217
Bbv12I	GWGCWC	6 cut(s)	141, 1017, 1042, 1542, 2977, 3560
BbvCI	CCTCAGC	1 cut(s)	293
BceAI	ACGGC	3 cut(s)	2300, 2732, 3269
BcgI	CGANNNNNNTGC	2 cut(s)	4336, 4370
BciT130I	CCWGG	4 cut(s)	274, 537, 2507, 3136
BciVI	GTATCC	2 cut(s)	3006, 4257
BclI	TGATCA	2 cut(s)	661, 3534
BcoDI	GTCTC	9 cut(s)	226, 1054, 1618, 1690, 2135, 2673, 2759, 2921, 3157
BcuI	ACTAGT	1 cut(s)	2161
BfmI	CTRYAG	5 cut(s)	3185, 3438, 3561, 3882, 4205
BfoI	RGCGCY	1 cut(s)	3319
BfuI	GTATCC	2 cut(s)	3006, 4257
BglI	GCCNNNNNGGC	1 cut(s)	3789
BglII	AGATCT	2 cut(s)	2897, 3049
BlpI	GCTNAGC	1 cut(s)	1386
BmcAI	AGTACT	3 cut(s)	516, 1582, 2385
Bme1390I	CCNGG	4 cut(s)	274, 537, 2507, 3136
Bme18I	GGWCC	5 cut(s)	959, 1708, 2170, 2509, 3967
BmeT110I	CYCGRG	1 cut(s)	4121
BmgT120I	GGNCC	5 cut(s)	959, 1708, 2170, 2509, 3967
BmrFI	CCNGG	4 cut(s)	274, 537, 2507, 3136
BpiI	GAAGAC	2 cut(s)	1976, 4217
BplI	GAGNNNNNCTC	6 cut(s)	361, 393, 2141, 2173, 3305, 3337
BpmI	CTGGAG	6 cut(s)	60, 471, 776, 1362, 3864, 4111
Bpu10I	CCTNAGC	3 cut(s)	293, 1797, 1969
Bpu1102I	GCTNAGC	1 cut(s)	1386
Bpu14I	TTCGAA	1 cut(s)	1717
BpuEI	CTTGAG	7 cut(s)	1410, 1424, 1808, 2168, 2195, 2945, 3909
Bsa29I	ATCGAT	2 cut(s)	2861, 4346
BsaBI	GATNNNNATC	2 cut(s)	2289, 3224
BsaI	GGTCTC	1 cut(s)	1618
BsaJI	CCNNGG	4 cut(s)	535, 1341, 1755, 4120
BsaWI	WCCGGW	1 cut(s)	1818
Bsc4I	CCNNNNNNNGG	5 cut(s)	629, 901, 3652, 3671, 3845
Bse118I	RCCGGY	2 cut(s)	3652, 3664
Bse1I	ACTGG	7 cut(s)	902, 1379, 2077, 3553, 3665, 3847, 4094
Bse3DI	GCAATG	3 cut(s)	1378, 1563, 2834
Bse8I	GATNNNNATC	2 cut(s)	2289, 3224
BseAI	TCCGGA	1 cut(s)	1818
BseBI	CCWGG	4 cut(s)	274, 537, 2507, 3136
BseCI	ATCGAT	2 cut(s)	2861, 4346
BseDI	CCNNGG	4 cut(s)	535, 1341, 1755, 4120
BseJI	GATNNNNATC	2 cut(s)	2289, 3224
BseLI	CCNNNNNNNGG	5 cut(s)	629, 901, 3652, 3671, 3845
BseMI	GCAATG	3 cut(s)	1378, 1563, 2834
BseNI	ACTGG	7 cut(s)	902, 1379, 2077, 3553, 3665, 3847, 4094
BsePI	GCGCGC	1 cut(s)	4126
BseRI	GAGGAG	2 cut(s)	1550, 4055
BseSI	GKGCMC	2 cut(s)	2977, 3560
BseYI	CCCAGC	1 cut(s)	861
BsgI	GTGCAG	4 cut(s)	413, 1117, 1335, 3862
Bsh1236I	CGCG	2 cut(s)	2265, 4128
BshFI	GGCC	6 cut(s)	227, 612, 1323, 3656, 3664, 3783
BshNI	GGYRCC	1 cut(s)	1792
BshVI	ATCGAT	2 cut(s)	2861, 4346
BsiHKAI	GWGCWC	6 cut(s)	141, 1017, 1042, 1542, 2977, 3560
BsiHKCI	CYCGRG	1 cut(s)	4121
BsiSI	CCGG	5 cut(s)	1035, 1819, 3653, 3665, 3784
BslI	CCNNNNNNNGG	5 cut(s)	629, 901, 3652, 3671, 3845
BsmAI	GTCTC	9 cut(s)	226, 1054, 1618, 1690, 2135, 2673, 2759, 2921, 3157
BsmI	GAATGC	2 cut(s)	3103, 3299
BsnI	GGCC	6 cut(s)	227, 612, 1323, 3656, 3664, 3783
Bso31I	GGTCTC	1 cut(s)	1618
BsoBI	CYCGRG	1 cut(s)	4121
Bsp119I	TTCGAA	1 cut(s)	1717
Bsp1286I	GDGCHC	6 cut(s)	141, 1017, 1042, 1542, 2977, 3560
Bsp13I	TCCGGA	1 cut(s)	1818
Bsp1407I	TGTACA	1 cut(s)	4238
Bsp1720I	GCTNAGC	1 cut(s)	1386
BspACI	CCGC	8 cut(s)	240, 992, 1739, 2248, 2839, 2874, 3381, 4034
BspANI	GGCC	6 cut(s)	227, 612, 1323, 3656, 3664, 3783
BspDI	ATCGAT	2 cut(s)	2861, 4346
BspEI	TCCGGA	1 cut(s)	1818
BspFNI	CGCG	2 cut(s)	2265, 4128
BspHI	TCATGA	2 cut(s)	1203, 3892
BspMAI	CTGCAG	2 cut(s)	3442, 4209
BspQI	GCTCTTC	5 cut(s)	479, 1564, 2600, 3306, 4137
BspT104I	TTCGAA	1 cut(s)	1717
BspT107I	GGYRCC	1 cut(s)	1792
BspTNI	GGTCTC	1 cut(s)	1618
BsrDI	GCAATG	3 cut(s)	1378, 1563, 2834
BsrFI	RCCGGY	2 cut(s)	3652, 3664
BsrGI	TGTACA	1 cut(s)	4238
BsrI	ACTGG	7 cut(s)	902, 1379, 2077, 3553, 3665, 3847, 4094
BssAI	RCCGGY	2 cut(s)	3652, 3664
BssECI	CCNNGG	4 cut(s)	535, 1341, 1755, 4120
BssHII	GCGCGC	1 cut(s)	4126
BssT1I	CCWWGG	2 cut(s)	1341, 1755
Bst2UI	CCWGG	4 cut(s)	274, 537, 2507, 3136
Bst6I	CTCTTC	8 cut(s)	279, 479, 1564, 1878, 2600, 2658, 3306, 4137
BstAUI	TGTACA	1 cut(s)	4238
BstBI	TTCGAA	1 cut(s)	1717
BstC8I	GCNNGC	6 cut(s)	836, 1100, 1636, 2263, 2418, 4128
BstEII	GGTNACC	1 cut(s)	2642
BstFNI	CGCG	2 cut(s)	2265, 4128
BstH2I	RGCGCY	1 cut(s)	3319
BstHHI	GCGC	6 cut(s)	783, 2267, 2326, 3318, 4128, 4130
BstMAI	GTCTC	9 cut(s)	226, 1054, 1618, 1690, 2135, 2673, 2759, 2921, 3157
BstNI	CCWGG	4 cut(s)	274, 537, 2507, 3136
BstNSI	RCATGY	3 cut(s)	1638, 1664, 3607
BstPI	GGTNACC	1 cut(s)	2642
BstSCI	CCNGG	4 cut(s)	272, 535, 2505, 3134
BstSFI	CTRYAG	5 cut(s)	3185, 3438, 3561, 3882, 4205
BstSLI	GKGCMC	2 cut(s)	2977, 3560
BstUI	CGCG	2 cut(s)	2265, 4128
BstV2I	GAAGAC	2 cut(s)	1976, 4217
BstX2I	RGATCY	5 cut(s)	2073, 2250, 2454, 2897, 3049
BstXI	CCANNNNNNTGG	1 cut(s)	3163
BstYI	RGATCY	5 cut(s)	2073, 2250, 2454, 2897, 3049
Bsu15I	ATCGAT	2 cut(s)	2861, 4346
BsuI	GTATCC	2 cut(s)	3006, 4257
BsuRI	GGCC	6 cut(s)	227, 612, 1323, 3656, 3664, 3783
BsuTUI	ATCGAT	2 cut(s)	2861, 4346
BtsI	GCAGTG	3 cut(s)	1088, 3204, 3799
Cac8I	GCNNGC	6 cut(s)	836, 1100, 1636, 2263, 2418, 4128
CaiI	CAGNNNCTG	1 cut(s)	2482
CciI	TCATGA	2 cut(s)	1203, 3892
CfoI	GCGC	6 cut(s)	783, 2267, 2326, 3318, 4128, 4130
Cfr10I	RCCGGY	2 cut(s)	3652, 3664
Cfr13I	GGNCC	5 cut(s)	959, 1708, 2170, 2509, 3967
ClaI	ATCGAT	2 cut(s)	2861, 4346
CseI	GACGC	1 cut(s)	1267
Csp6I	GTAC	7 cut(s)	256, 515, 1087, 1581, 2384, 2734, 4239
CspCI	CAANNNNNGTGG	2 cut(s)	1064, 1099
CviQI	GTAC	7 cut(s)	256, 515, 1087, 1581, 2384, 2734, 4239
DrdI	GACNNNNNNGTC	1 cut(s)	2935
DseDI	GACNNNNNNGTC	1 cut(s)	2935
EaeI	YGGCCR	4 cut(s)	225, 3654, 3662, 3781
Eam1104I	CTCTTC	8 cut(s)	279, 479, 1564, 1878, 2600, 2658, 3306, 4137
EarI	CTCTTC	8 cut(s)	279, 479, 1564, 1878, 2600, 2658, 3306, 4137
Eco130I	CCWWGG	2 cut(s)	1341, 1755
Eco31I	GGTCTC	1 cut(s)	1618
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	5 cut(s)	959, 1708, 2170, 2509, 3967
Eco47III	AGCGCT	1 cut(s)	3317
Eco57I	CTGAAG	1 cut(s)	1075
Eco88I	CYCGRG	1 cut(s)	4121
Eco91I	GGTNACC	1 cut(s)	2642
EcoO109I	RGGNCCY	3 cut(s)	1708, 2170, 2509
EcoO65I	GGTNACC	1 cut(s)	2642
EcoRI	GAATTC	1 cut(s)	2501
EcoRII	CCWGG	4 cut(s)	272, 535, 2505, 3134
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	1341, 1755
EcoT22I	ATGCAT	2 cut(s)	92, 1492
ErhI	CCWWGG	2 cut(s)	1341, 1755
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FbaI	TGATCA	2 cut(s)	661, 3534
FblI	GTMKAC	1 cut(s)	3803
FspAI	RTGCGCAY	1 cut(s)	2325
FspI	TGCGCA	2 cut(s)	782, 2325
GlaI	GCGC	6 cut(s)	782, 2266, 2325, 3317, 4127, 4129
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	6 cut(s)	60, 471, 776, 1362, 3864, 4111
HaeII	RGCGCY	1 cut(s)	3319
HaeIII	GGCC	6 cut(s)	227, 612, 1323, 3656, 3664, 3783
HapII	CCGG	5 cut(s)	1035, 1819, 3653, 3665, 3784
HgaI	GACGC	1 cut(s)	1267
HhaI	GCGC	6 cut(s)	783, 2267, 2326, 3318, 4128, 4130
Hin6I	GCGC	6 cut(s)	781, 2265, 2324, 3316, 4126, 4128
HinP1I	GCGC	6 cut(s)	781, 2265, 2324, 3316, 4126, 4128
HincII	GTYRAC	2 cut(s)	1182, 1599
HindII	GTYRAC	2 cut(s)	1182, 1599
HindIII	AAGCTT	2 cut(s)	1412, 4233
HpaII	CCGG	5 cut(s)	1035, 1819, 3653, 3665, 3784
Hpy166II	GTNNAC	9 cut(s)	256, 1182, 1465, 1599, 2854, 2975, 3558, 3650, 3804
Hpy8I	GTNNAC	9 cut(s)	256, 1182, 1465, 1599, 2854, 2975, 3558, 3650, 3804
HpyCH4IV	ACGT	1 cut(s)	1671
HpySE526I	ACGT	1 cut(s)	1671
HspAI	GCGC	6 cut(s)	781, 2265, 2324, 3316, 4126, 4128
Kpn2I	TCCGGA	1 cut(s)	1818
Ksp22I	TGATCA	2 cut(s)	661, 3534
LguI	GCTCTTC	5 cut(s)	479, 1564, 2600, 3306, 4137
MaeII	ACGT	1 cut(s)	1671
MfeI	CAATTG	4 cut(s)	1154, 2648, 2742, 3742
MflI	RGATCY	5 cut(s)	2073, 2250, 2454, 2897, 3049
MhlI	GDGCHC	6 cut(s)	141, 1017, 1042, 1542, 2977, 3560
MlyI	GAGTC	6 cut(s)	644, 2137, 2785, 2987, 3278, 4055
MmeI	TCCRAC	2 cut(s)	2278, 3424
Mph1103I	ATGCAT	2 cut(s)	92, 1492
MroI	TCCGGA	1 cut(s)	1818
MroXI	GAANNNNTTC	1 cut(s)	2100
MslI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3161
MspA1I	CMGCKG	1 cut(s)	2248
MspI	CCGG	5 cut(s)	1035, 1819, 3653, 3665, 3784
MspR9I	CCNGG	4 cut(s)	274, 537, 2507, 3136
MunI	CAATTG	4 cut(s)	1154, 2648, 2742, 3742
Mva1269I	GAATGC	2 cut(s)	3103, 3299
MvaI	CCWGG	4 cut(s)	274, 537, 2507, 3136
MvnI	CGCG	2 cut(s)	2265, 4128
NmeAIII	GCCGAG	2 cut(s)	203, 3292
NmuCI	GTSAC	5 cut(s)	602, 1071, 2392, 2560, 2642
NsbI	TGCGCA	2 cut(s)	782, 2325
NsiI	ATGCAT	2 cut(s)	92, 1492
NspI	RCATGY	3 cut(s)	1638, 1664, 3607
NspV	TTCGAA	1 cut(s)	1717
OliI	CACNNNNGTG	1 cut(s)	1191
PaeI	GCATGC	1 cut(s)	1638
PagI	TCATGA	2 cut(s)	1203, 3892
PauI	GCGCGC	1 cut(s)	4126
PciSI	GCTCTTC	5 cut(s)	479, 1564, 2600, 3306, 4137
PctI	GAATGC	2 cut(s)	3103, 3299
PdmI	GAANNNNTTC	1 cut(s)	2100
PfeI	GAWTC	4 cut(s)	35, 1064, 2224, 2868
PflFI	GACNNNGTC	1 cut(s)	2513
PfoI	TCCNGGA	1 cut(s)	2505
PleI	GAGTC	6 cut(s)	643, 2137, 2784, 2987, 3277, 4055
PpsI	GAGTC	6 cut(s)	643, 2137, 2784, 2987, 3277, 4055
PpuMI	RGGWCCY	3 cut(s)	1708, 2170, 2509
PshBI	ATTAAT	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	1671
Psp5II	RGGWCCY	3 cut(s)	1708, 2170, 2509
Psp6I	CCWGG	4 cut(s)	272, 535, 2505, 3134
PspEI	GGTNACC	1 cut(s)	2642
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	4 cut(s)	272, 535, 2505, 3134
PspPI	GGNCC	5 cut(s)	959, 1708, 2170, 2509, 3967
PspPPI	RGGWCCY	3 cut(s)	1708, 2170, 2509
PstI	CTGCAG	2 cut(s)	3442, 4209
PstNI	CAGNNNCTG	1 cut(s)	2482
PsuI	RGATCY	5 cut(s)	2073, 2250, 2454, 2897, 3049
PsyI	GACNNNGTC	1 cut(s)	2513
PteI	GCGCGC	1 cut(s)	4126
RsaI	GTAC	7 cut(s)	257, 516, 1088, 1582, 2385, 2735, 4240
RsaNI	GTAC	7 cut(s)	256, 515, 1087, 1581, 2384, 2734, 4239
RseI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3161
SapI	GCTCTTC	5 cut(s)	479, 1564, 2600, 3306, 4137
Sau96I	GGNCC	5 cut(s)	959, 1708, 2170, 2509, 3967
ScaI	AGTACT	3 cut(s)	516, 1582, 2385
SchI	GAGTC	6 cut(s)	644, 2137, 2785, 2987, 3278, 4055
ScrFI	CCNGG	4 cut(s)	274, 537, 2507, 3136
SduI	GDGCHC	6 cut(s)	141, 1017, 1042, 1542, 2977, 3560
SfcI	CTRYAG	5 cut(s)	3185, 3438, 3561, 3882, 4205
SfuI	TTCGAA	1 cut(s)	1717
SinI	GGWCC	5 cut(s)	959, 1708, 2170, 2509, 3967
SmiMI	CAYNNNNRTG	4 cut(s)	389, 712, 1191, 3161
SmlI	CTYRAG	7 cut(s)	1425, 1439, 1787, 2147, 2174, 2924, 3924
SmoI	CTYRAG	7 cut(s)	1425, 1439, 1787, 2147, 2174, 2924, 3924
SpeI	ACTAGT	1 cut(s)	2161
SphI	GCATGC	1 cut(s)	1638
SsiI	CCGC	8 cut(s)	240, 992, 1739, 2248, 2839, 2874, 3381, 4034
SspI	AATATT	3 cut(s)	2029, 2101, 3194
StyD4I	CCNGG	4 cut(s)	272, 535, 2505, 3134
StyI	CCWWGG	2 cut(s)	1341, 1755
TaiI	ACGT	1 cut(s)	1674
TatI	WGTACW	6 cut(s)	255, 514, 1580, 2383, 2733, 4238
TfiI	GAWTC	4 cut(s)	35, 1064, 2224, 2868
TseFI	GTSAC	5 cut(s)	602, 1071, 2392, 2560, 2642
Tsp45I	GTSAC	5 cut(s)	602, 1071, 2392, 2560, 2642
TspGWI	ACGGA	3 cut(s)	1301, 1644, 4350
Tth111I	GACNNNGTC	1 cut(s)	2513
VneI	GTGCAC	2 cut(s)	2973, 3556
VpaK11BI	GGWCC	5 cut(s)	959, 1708, 2170, 2509, 3967
VspI	ATTAAT	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	2591
XceI	RCATGY	3 cut(s)	1638, 1664, 3607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3657
XmiI	GTMKAC	1 cut(s)	3803
XmnI	GAANNNNTTC	1 cut(s)	2100
ZrmI	AGTACT	3 cut(s)	516, 1582, 2385
Zsp2I	ATGCAT	2 cut(s)	92, 1492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.