RLG00000026359

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
2400915 .. 2403600
2686 bp
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UTR
Exon/CDS
Intron
RLM00000026359

Sequence Viewer

Length: 1584 bp
ATGGAAGCCGTTCTGTTTCTAAATCATTGTTTCAAGATGACTAGTAAATGGAGCAGTAGCCTCTCCTTAGATGCAATGGCATGGAGCTTTTCTCAGTTATTGGCCTCGAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCACATGTCCCTTCTGTCCAAAATTCTGGAACATCATCCGGAAAGATTAAGAAGGCTTATGTAGAGAAGAAATTGAAAGGAAATAAAGCTGCTGTTCTTTTACACCTGACGTTTGTTATTAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCATATCTCTTTTAACAGTTGTTTTGGGTCTTGAGGCATCAAGGGCTTTATTTGCTCAGCTACTAAACTCTCTATTTCATGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGCTTTCATCTGATCCAAGTATTGTAGATCTTGATATTCCATTCAGCCTTATCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTATTTCCATACCAATGGTCTTTCTGGTAATTCAGCTACAGTCTGTATCAGACGCCATTACAATAAGAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGACGCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACCAGTGCACTATAGCAAATTACATAATTTCGGTTGAAAGACTAAATCAATTCACACATGTACCAAGTGAAGCCCCTGAAGTTATAGAGGAACCGTCCACCTCCCAACCGGCCTGTTGTAGGAAAAGTGGAGATACAAAATTTGCAGAAGGACATAAGTTTGGGATTGTTGGCCGGACAGGCAGTGGGAAGTCTACACTAATCGGTGCTCTATTTCGTCTGGTAGAGCCAGCCGGAGGGAAGGTTATAGTCGATGGCATTGACATCTCTACTATAGGACTTCATGATCTGAGGTCAAGATTTGGAATAATACCTCAAGACCCTACTCTCTTCAATGGGACTGTGAGATACAAGTTGGATCCCTTATATCAACATTCAGACATGAAATATGGGAGTTATCTTTTCATTTCGAAGGTTCTTGGGAAGTGTCAGCTTCAGGAGGCTGTTCAAGAAAAAGAAGGCGGCTTAGACTCTTTAGTTGTGGAAGATGGATCAAACTGGAGCATGGGGCAAACGCAGTTCTGTGCTCTTTTAAGGAGAAGTCAGGTATTGGTGCTTGATGAAGCAACAAAGACTATACGGACTGAATTTGCAGATTGTACAGTTATTACAGTAGCTCACAGGACACCGACTGTGATGGATTGCACAATGGTCCTTGCCATTAGTGACGGAAATGCTGTGATATATTACGGGGAAAATAGTGGAGTATGA

Protein Analysis

528

Amino Acids

57.5

Weight (kDa)

6.02

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 118 - 230 1.6e-12 ABC transporter transmembrane region
ABC_tran PF00005 337 - 481 2.7e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 745
AccI GTMKAC 1 cut(s) 1067
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 2 cut(s) 676, 1335
AclWI GGATC 4 cut(s) 470, 1226, 1239, 1372
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 4 cut(s) 190, 691, 1013, 1460
AcuI CTGAAG 2 cut(s) 972, 1292
AcyI GRCGYC 1 cut(s) 642
AfaI GTAC 3 cut(s) 561, 936, 1474
AfiI CCNNNNNNNGG 3 cut(s) 682, 993, 1109
AflIII ACRYGT 3 cut(s) 172, 849, 931
AgsI TTSAA 9 cut(s) 34, 244, 664, 725, 867, 872, 911, 1207, 1322
AhlI ACTAGT 1 cut(s) 41
Alw21I GWGCWC 3 cut(s) 884, 1084, 1402
Alw44I GTGCAC 1 cut(s) 880
AlwI GGATC 4 cut(s) 470, 1226, 1239, 1372
Ama87I CYCGRG 1 cut(s) 106
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 3 cut(s) 102, 984, 1045
ApaLI GTGCAC 1 cut(s) 880
ApeKI GCWGC 5 cut(s) 257, 317, 566, 746, 764
ApoI RAATTY 4 cut(s) 190, 691, 1013, 1460
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 746
AspS9I GGNCC 2 cut(s) 124, 1525
AsuHPI GGTGA 1 cut(s) 689
AsuII TTCGAA 1 cut(s) 1283
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 2 cut(s) 124, 1525
BaeGI GKGCMC 1 cut(s) 884
BaeI ACNNNNGTAYC 2 cut(s) 918, 951
BamHI GGATCC 1 cut(s) 1231
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 3 cut(s) 884, 1084, 1402
BbvI GCAGC 5 cut(s) 244, 304, 553, 758, 776
BccI CCATC 4 cut(s) 307, 1121, 1355, 1504
BciVI GTATCC 1 cut(s) 447
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 2 cut(s) 42, 563
BfmI CTRYAG 4 cut(s) 626, 762, 885, 1146
BfuI GTATCC 1 cut(s) 447
BglI GCCNNNNNGGC 1 cut(s) 1053
BglII AGATCT 1 cut(s) 490
BisI GCNGC 6 cut(s) 258, 318, 567, 747, 765, 1336
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 6 cut(s) 259, 319, 568, 748, 766, 1337
BmcAI AGTACT 1 cut(s) 561
Bme18I GGWCC 2 cut(s) 124, 1525
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 124, 1525
BmiI GGNNCC 2 cut(s) 966, 1233
BmsI GCATC 2 cut(s) 61, 380
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 76, 108
BpmI CTGGAG 1 cut(s) 1393
Bpu1102I GCTNAGC 1 cut(s) 390
Bpu14I TTCGAA 1 cut(s) 1283
BpuEI CTTGAG 2 cut(s) 386, 1173
BsaHI GRCGYC 1 cut(s) 642
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 1101, 1131
Bsc4I CCNNNNNNNGG 3 cut(s) 682, 993, 1109
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 3 cut(s) 796, 877, 1376
Bse3DI GCAATG 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 206
BseGI GGATG 2 cut(s) 203, 318
BseLI CCNNNNNNNGG 3 cut(s) 682, 993, 1109
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 3 cut(s) 107, 404, 1154
BseNI ACTGG 3 cut(s) 796, 877, 1376
BseSI GKGCMC 1 cut(s) 884
BseXI GCAGC 5 cut(s) 244, 304, 553, 758, 776
BshFI GGCC 3 cut(s) 104, 986, 1047
BsiHKAI GWGCWC 3 cut(s) 884, 1084, 1402
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 4 cut(s) 207, 983, 1048, 1107
BslFI GGGAC 2 cut(s) 161, 1225
BslI CCNNNNNNNGG 3 cut(s) 682, 993, 1109
BsmFI GGGAC 2 cut(s) 161, 1225
BsnI GGCC 3 cut(s) 104, 986, 1047
BsoBI CYCGRG 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 1283
Bsp1286I GDGCHC 3 cut(s) 884, 1084, 1402
Bsp13I TCCGGA 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 1472
Bsp143I GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 2 cut(s) 676, 1335
BspANI GGCC 3 cut(s) 104, 986, 1047
BspCNI CTCAG 3 cut(s) 106, 403, 1155
BspEI TCCGGA 1 cut(s) 206
BspHI TCATGA 1 cut(s) 1156
BspLI GGNNCC 2 cut(s) 966, 1233
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 4 cut(s) 470, 1226, 1239, 1372
BspT104I TTCGAA 1 cut(s) 1283
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 982
BsrGI TGTACA 1 cut(s) 1472
BsrI ACTGG 3 cut(s) 796, 877, 1376
BssAI RCCGGY 1 cut(s) 982
BssMI GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
BssNI GRCGYC 1 cut(s) 642
Bst4CI ACNGT 8 cut(s) 352, 630, 729, 969, 1216, 1477, 1486, 1507
Bst6I CTCTTC 1 cut(s) 1208
BstACI GRCGYC 1 cut(s) 642
BstAUI TGTACA 1 cut(s) 1472
BstBI TTCGAA 1 cut(s) 1283
BstC8I GCNNGC 2 cut(s) 168, 1104
BstDEI CTNAG 6 cut(s) 67, 93, 390, 458, 1163, 1339
BstENI CCTNNNNNAGG 1 cut(s) 991
BstF5I GGATG 2 cut(s) 203, 318
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 6 cut(s) 478, 493, 861, 1162, 1234, 1367
BstMBI GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
BstMWI GCNNNNNNNGC 6 cut(s) 377, 386, 527, 755, 764, 1053
BstNSI RCATGY 3 cut(s) 176, 853, 935
BstSFI CTRYAG 4 cut(s) 626, 762, 885, 1146
BstSLI GKGCMC 1 cut(s) 884
BstV1I GCAGC 5 cut(s) 244, 304, 553, 758, 776
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 490, 1231
BstXI CCANNNNNNTGG 2 cut(s) 194, 604
BstYI RGATCY 2 cut(s) 490, 1231
BsuI GTATCC 1 cut(s) 447
BsuRI GGCC 3 cut(s) 104, 986, 1047
BtsCI GGATG 2 cut(s) 203, 318
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 2 cut(s) 884, 1063
Cac8I GCNNGC 2 cut(s) 168, 1104
CciI TCATGA 1 cut(s) 1156
CfoI GCGC 1 cut(s) 746
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 2 cut(s) 124, 1525
CseI GACGC 2 cut(s) 650, 832
Csp6I GTAC 3 cut(s) 560, 935, 1473
CviQI GTAC 3 cut(s) 560, 935, 1473
DdeI CTNAG 6 cut(s) 67, 93, 390, 458, 1163, 1339
DpnI GATC 6 cut(s) 477, 492, 860, 1161, 1233, 1366
DpnII GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 1 cut(s) 1208
EarI CTCTTC 1 cut(s) 1208
Eco47I GGWCC 2 cut(s) 124, 1525
Eco57I CTGAAG 2 cut(s) 972, 1292
Eco88I CYCGRG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 991
EcoO109I RGGNCCY 1 cut(s) 124
FaqI GGGAC 2 cut(s) 161, 1225
FblI GTMKAC 1 cut(s) 1067
Fnu4HI GCNGC 6 cut(s) 258, 318, 567, 747, 765, 1336
FokI GGATG 2 cut(s) 190, 325
Fsp4HI GCNGC 6 cut(s) 258, 318, 567, 747, 765, 1336
FspBI CTAG 2 cut(s) 42, 563
FspI TGCGCA 1 cut(s) 745
GlaI GCGC 1 cut(s) 745
GluI GCNGC 6 cut(s) 258, 318, 567, 747, 765, 1336
GsuI CTGGAG 1 cut(s) 1393
HaeIII GGCC 3 cut(s) 104, 986, 1047
HapII CCGG 4 cut(s) 207, 983, 1048, 1107
HgaI GACGC 2 cut(s) 650, 832
HhaI GCGC 1 cut(s) 746
Hin1I GRCGYC 1 cut(s) 642
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HinfI GANTC 3 cut(s) 434, 721, 1343
HpaII CCGG 4 cut(s) 207, 983, 1048, 1107
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 3 cut(s) 882, 972, 1068
Hpy188I TCNGA 6 cut(s) 160, 294, 475, 640, 1164, 1252
Hpy8I GTNNAC 3 cut(s) 882, 972, 1068
HpyAV CCTTC 7 cut(s) 189, 214, 444, 1016, 1108, 1279, 1325
HpyCH4III ACNGT 8 cut(s) 352, 630, 729, 969, 1216, 1477, 1486, 1507
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 9 cut(s) 74, 137, 170, 416, 764, 882, 1019, 1466, 1518
HpyF10VI GCNNNNNNNGC 6 cut(s) 377, 386, 527, 755, 764, 1053
HpyF3I CTNAG 6 cut(s) 67, 93, 390, 458, 1163, 1339
HpySE526I ACGT 1 cut(s) 278
Hsp92I GRCGYC 1 cut(s) 642
HspAI GCGC 1 cut(s) 744
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
LmnI GCTCC 4 cut(s) 51, 84, 527, 1374
Lsp1109I GCAGC 5 cut(s) 244, 304, 553, 758, 776
LweI GCATC 2 cut(s) 61, 380
MaeI CTAG 2 cut(s) 42, 563
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 571, 1538
MalI GATC 6 cut(s) 477, 492, 860, 1161, 1233, 1366
MboI GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
MboII GAAGA 5 cut(s) 247, 680, 683, 1195, 1370
MflI RGATCY 2 cut(s) 490, 1231
MhlI GDGCHC 3 cut(s) 884, 1084, 1402
MlyI GAGTC 2 cut(s) 428, 1337
MmeI TCCRAC 2 cut(s) 812, 1209
MroI TCCGGA 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 4 cut(s) 216, 347, 845, 1406
MslI CAYNNNNRTG 1 cut(s) 602
MspI CCGG 4 cut(s) 207, 983, 1048, 1107
MwoI GCNNNNNNNGC 6 cut(s) 377, 386, 527, 755, 764, 1053
NdeII GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
NlaIV GGNNCC 2 cut(s) 966, 1233
NmuCI GTSAC 1 cut(s) 1538
NsbI TGCGCA 1 cut(s) 745
NspI RCATGY 3 cut(s) 176, 853, 935
NspV TTCGAA 1 cut(s) 1283
PaeR7I CTCGAG 1 cut(s) 106
PagI TCATGA 1 cut(s) 1156
PciI ACATGT 3 cut(s) 172, 849, 931
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 721
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 6 cut(s) 259, 319, 568, 748, 766, 1337
PleI GAGTC 2 cut(s) 428, 1337
PpsI GAGTC 2 cut(s) 428, 1337
PpuMI RGGWCCY 1 cut(s) 124
PscI ACATGT 3 cut(s) 172, 849, 931
Psp5II RGGWCCY 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 966, 1233
PspPI GGNCC 2 cut(s) 124, 1525
PspPPI RGGWCCY 1 cut(s) 124
PspXI VCTCGAGB 1 cut(s) 106
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 2 cut(s) 490, 1231
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 3 cut(s) 561, 936, 1474
RsaNI GTAC 3 cut(s) 560, 935, 1473
RseI CAYNNNNRTG 1 cut(s) 602
SaqAI TTAA 4 cut(s) 216, 347, 845, 1406
SatI GCNGC 6 cut(s) 258, 318, 567, 747, 765, 1336
Sau3AI GATC 6 cut(s) 475, 490, 858, 1159, 1231, 1364
Sau96I GGNCC 2 cut(s) 124, 1525
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 2 cut(s) 428, 1337
SduI GDGCHC 3 cut(s) 884, 1084, 1402
SfaNI GCATC 2 cut(s) 61, 380
SfcI CTRYAG 4 cut(s) 626, 762, 885, 1146
Sfr274I CTCGAG 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 1283
SinI GGWCC 2 cut(s) 124, 1525
SlaI CTCGAG 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 3 cut(s) 106, 365, 1188
SmoI CTYRAG 3 cut(s) 106, 365, 1188
SpeI ACTAGT 1 cut(s) 41
SsiI CCGC 2 cut(s) 676, 1335
SspMI CTAG 2 cut(s) 42, 563
TaaI ACNGT 8 cut(s) 352, 630, 729, 969, 1216, 1477, 1486, 1507
TaiI ACGT 1 cut(s) 281
TaqI TCGA 3 cut(s) 107, 1125, 1283
TatI WGTACW 2 cut(s) 559, 1472
TauI GCSGC 1 cut(s) 1338
TfiI GAWTC 1 cut(s) 721
Tru1I TTAA 4 cut(s) 216, 347, 845, 1406
Tru9I TTAA 4 cut(s) 216, 347, 845, 1406
TscAI CASTG 2 cut(s) 884, 1063
TseFI GTSAC 1 cut(s) 1538
TseI GCWGC 5 cut(s) 257, 317, 566, 746, 764
Tsp45I GTSAC 1 cut(s) 1538
TspDTI ATGAA 8 cut(s) 401, 459, 681, 831, 1145, 1267, 1271, 1449
TspGWI ACGGA 2 cut(s) 1468, 1557
TspRI CASTG 2 cut(s) 884, 1063
Tth111I GACNNNGTC 1 cut(s) 128
VneI GTGCAC 1 cut(s) 880
VpaK11BI GGWCC 2 cut(s) 124, 1525
XagI CCTNNNNNAGG 1 cut(s) 991
XapI RAATTY 4 cut(s) 190, 691, 1013, 1460
XceI RCATGY 3 cut(s) 176, 853, 935
XhoI CTCGAG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 1067
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 2 cut(s) 42, 563
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.