FvH4_7g32840

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
23522660 .. 23523940
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32840.t1

Sequence Viewer

Length: 1281 bp
ATGGGTTGTTTTGTTGATCTGTTATTGCGTTGCTTCGGTGGATGCTTTGGAATTGAACATCATGACCGGAGGCGGAGCCCCAAAGTCTCTCCGGAGCCAGAGGCAGAGGCTTTAGAGAAGAAGAAAATTGCAAAGCAACTTGGCCGTCCTGATCTTGCTCGCATTGAGACCAATCTTTACGAAGATGTTATATTGAACTGTCAAGCTGTTATGAACCCTGGCGACATTCAAGTGGAATGTGATTCTCACCTCGATAATGTGACGAAGCAATCCTTGTTTGATCAACTTATCGTTCCACTATGGAGGCCTGAGCTGTTTCTTAACGGCAGCAAGCTGCTGGCTGGTCCACGGAGAGGAGTCGTGCTCCATGGACCACCGCCGAGTAATACTGGCAAAGCAACATTGCTTGCTACTGCCAAGTTCATAGCAAAAGATTCTGGCGCCGTCTTCATCAGTGCAAGGAAAATAGCGAATCTGATCACCAGTAGTTTCAGCGATTATGATGCTACAAAGAAACGGCAATTTATCAGTGCTGTGTTTAGCTTAGCTTCTAAACTCCAGCCTGCTGTCATATATATCAACGACATGGATGGTTTCTTGGGGCAACTCTCCCAAACTAACATGAAGACTGAGTTCTTGGAAATATTGGATGGTTTTTTTACTGACCAGAAGCATGAGCATGCTCAAGTATTGGTTCTAGCTGCTACTAGTAAATGTAATCGTGCATCACCGGAGCTTGATGAAGTAATAAAACGGCATTTTCAGGTCTTTGAGATTCGGGTGCCATGGATGAAGGAGAGGGCAGAGATACTGAAGTTGATTATGAAGGGTGAGAGAGTTGAAGAAAATATTGATTATGACCACGTAGCTGCATTGACTGACGGTTACGAAGCTTCAGATCTATACCAACTTTGCAAGAAAGCAGCGTACAATCCTATCAGAGATTATCTACAATATGAAGAAAAGAGTGGAATTAAGCAATCTTCTCCACCAAGGCTAATGTCACAGTTGGATTTAGAGAATGTGGTGATTGCACAACTTATTCCATACTTGAACAAGTTGTTACAGCAAGCGACGATTATACTGGATCAAACTCACAATGAGAAACACCATCACCAGCTGAAACAGATACTGAGCTCTTTAGGATTTAGTTACAGAGGTAAAGATGACAGCAATGTGATGGAGAAGAGAGACGGAAAGGCTGTAAATGACATATGCAAGAACGCGAAAAGAGGGAAGCATAGAGTTGATTCAGTAGGACAAACTACTCGCACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

48.08

Weight (kDa)

8.46

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 121 - 253 3.4e-08 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 283 - 318 2.9e-06 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 440, 781
AccII CGCG 1 cut(s) 1226
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 2 cut(s) 73, 377
AclWI GGATC 1 cut(s) 1095
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 2 cut(s) 833, 879
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 929
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 5 cut(s) 56, 196, 230, 842, 1054
AhlI ACTAGT 1 cut(s) 707
AjnI CCWGG 1 cut(s) 217
Alw21I GWGCWC 2 cut(s) 366, 1139
Alw26I GTCTC 3 cut(s) 91, 161, 1185
AlwI GGATC 1 cut(s) 1095
AlwNI CAGNNNCTG 1 cut(s) 1132
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 2 cut(s) 142, 305
ApeKI GCWGC 5 cut(s) 327, 334, 701, 869, 923
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 2 cut(s) 344, 371
AsuHPI GGTGA 6 cut(s) 239, 472, 720, 842, 1039, 1106
AvaII GGWCC 2 cut(s) 344, 371
BaeI ACNNNNGTAYC 2 cut(s) 800, 833
BanI GGYRCC 2 cut(s) 440, 781
BanII GRGCYC 2 cut(s) 80, 1139
BbsI GAAGAC 2 cut(s) 439, 632
Bbv12I GWGCWC 2 cut(s) 366, 1139
BbvI GCAGC 5 cut(s) 321, 339, 688, 856, 935
BccI CCATC 4 cut(s) 584, 644, 1119, 1174
BceAI ACGGC 5 cut(s) 129, 340, 428, 533, 770
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 2 cut(s) 280, 477
BcoDI GTCTC 3 cut(s) 91, 161, 1185
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 2 cut(s) 698, 708
BfoI RGCGCY 1 cut(s) 444
BglII AGATCT 1 cut(s) 898
BisI GCNGC 5 cut(s) 328, 335, 702, 870, 924
BlpI GCTNAGC 1 cut(s) 544
BlsI GCNGC 5 cut(s) 329, 336, 703, 871, 925
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 2 cut(s) 344, 371
BmgT120I GGNCC 2 cut(s) 344, 371
BmiI GGNNCC 4 cut(s) 77, 96, 442, 783
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 3 cut(s) 32, 493, 734
BpiI GAAGAC 2 cut(s) 439, 632
BplI GAGNNNNNCTC 2 cut(s) 348, 380
BpmI CTGGAG 1 cut(s) 542
Bpu10I CCTNAGC 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 544
BpuEI CTTGAG 1 cut(s) 669
BsaAI YACGTR 1 cut(s) 865
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 5 cut(s) 217, 347, 367, 785, 992
BsaWI WCCGGW 3 cut(s) 66, 91, 730
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 394, 483, 1089
Bse3DI GCAATG 2 cut(s) 401, 1180
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 5 cut(s) 217, 347, 367, 785, 992
BseGI GGATG 4 cut(s) 47, 595, 655, 795
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 2 cut(s) 401, 1180
BseMII CTCAG 3 cut(s) 300, 621, 1124
BseNI ACTGG 3 cut(s) 394, 483, 1089
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 5 cut(s) 321, 339, 688, 856, 935
Bsh1236I CGCG 1 cut(s) 1226
BshFI GGCC 2 cut(s) 144, 307
BshNI GGYRCC 2 cut(s) 440, 781
BsiHKAI GWGCWC 2 cut(s) 366, 1139
BsiSI CCGG 3 cut(s) 67, 92, 731
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 3 cut(s) 91, 161, 1185
BsmBI CGTCTC 1 cut(s) 1185
BsnI GGCC 2 cut(s) 144, 307
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 80, 366, 1139
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
Bsp1720I GCTNAGC 1 cut(s) 544
Bsp19I CCATGG 2 cut(s) 367, 785
BspACI CCGC 2 cut(s) 73, 377
BspANI GGCC 2 cut(s) 144, 307
BspCNI CTCAG 3 cut(s) 301, 622, 1125
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 1 cut(s) 1226
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 77, 96, 442, 783
BspPI GGATC 1 cut(s) 1095
BspT107I GGYRCC 2 cut(s) 440, 781
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 2 cut(s) 401, 1180
BsrI ACTGG 3 cut(s) 394, 483, 1089
BssECI CCNNGG 5 cut(s) 217, 347, 367, 785, 992
BssMI GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 3 cut(s) 367, 785, 992
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 3 cut(s) 200, 884, 1008
Bst6I CTCTTC 1 cut(s) 1181
BstACI GRCGYC 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 865
BstC8I GCNNGC 7 cut(s) 160, 332, 339, 408, 564, 681, 1071
BstDEI CTNAG 4 cut(s) 309, 544, 630, 1133
BstDSI CCRYGG 3 cut(s) 347, 367, 785
BstF5I GGATG 4 cut(s) 47, 595, 655, 795
BstFNI CGCG 1 cut(s) 1226
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 6 cut(s) 19, 154, 283, 480, 901, 1090
BstMAI GTCTC 3 cut(s) 91, 161, 1185
BstMBI GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 217
BstUI CGCG 1 cut(s) 1226
BstV1I GCAGC 5 cut(s) 321, 339, 688, 856, 935
BstV2I GAAGAC 2 cut(s) 439, 632
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
BsuRI GGCC 2 cut(s) 144, 307
BtgI CCRYGG 3 cut(s) 347, 367, 785
BtsCI GGATG 4 cut(s) 47, 595, 655, 795
BtsIMutI CAGTG 2 cut(s) 460, 535
Cac8I GCNNGC 7 cut(s) 160, 332, 339, 408, 564, 681, 1071
CaiI CAGNNNCTG 1 cut(s) 1132
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 344, 371
Csp6I GTAC 1 cut(s) 928
CviAII CATG 7 cut(s) 62, 368, 586, 622, 674, 680, 786
CviQI GTAC 1 cut(s) 928
DdeI CTNAG 4 cut(s) 309, 544, 630, 1133
DinI GGCGCC 1 cut(s) 442
DpnI GATC 6 cut(s) 18, 153, 282, 479, 900, 1089
DpnII GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 1181
EarI CTCTTC 1 cut(s) 1181
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 1137
Eco130I CCWWGG 3 cut(s) 367, 785, 992
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 2 cut(s) 80, 1139
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 344, 371
Eco53kI GAGCTC 1 cut(s) 1137
Eco57I CTGAAG 2 cut(s) 833, 879
EcoICRI GAGCTC 1 cut(s) 1137
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 3 cut(s) 367, 785, 992
EcoT38I GRGCYC 2 cut(s) 80, 1139
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
ErhI CCWWGG 3 cut(s) 367, 785, 992
Esp3I CGTCTC 1 cut(s) 1185
FaeI CATG 7 cut(s) 65, 371, 589, 625, 677, 683, 789
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 7 cut(s) 61, 367, 585, 621, 673, 679, 785
FauNDI CATATG 1 cut(s) 1214
FbaI TGATCA 2 cut(s) 280, 477
Fnu4HI GCNGC 5 cut(s) 328, 335, 702, 870, 924
FokI GGATG 4 cut(s) 54, 602, 662, 802
FriOI GRGCYC 2 cut(s) 80, 1139
Fsp4HI GCNGC 5 cut(s) 328, 335, 702, 870, 924
FspBI CTAG 2 cut(s) 698, 708
GlaI GCGC 1 cut(s) 442
GluI GCNGC 5 cut(s) 328, 335, 702, 870, 924
GsuI CTGGAG 1 cut(s) 542
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 2 cut(s) 144, 307
HapII CCGG 3 cut(s) 67, 92, 731
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 7 cut(s) 65, 371, 589, 625, 677, 683, 789
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 6 cut(s) 242, 357, 434, 472, 775, 1250
HpaII CCGG 3 cut(s) 67, 92, 731
HphI GGTGA 6 cut(s) 239, 472, 720, 842, 1039, 1106
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 477, 898, 941
Hpy188III TCNNGA 3 cut(s) 62, 92, 149
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 1078
HpyAV CCTTC 2 cut(s) 787, 820
HpyCH4III ACNGT 3 cut(s) 200, 884, 1008
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 7 cut(s) 131, 458, 725, 872, 915, 1034, 1218
HpyF3I CTNAG 4 cut(s) 309, 544, 630, 1133
HpySE526I ACGT 1 cut(s) 864
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 7 cut(s) 65, 371, 589, 625, 677, 683, 789
HspAI GCGC 1 cut(s) 441
KasI GGCGCC 1 cut(s) 440
Kpn2I TCCGGA 1 cut(s) 91
Ksp22I TGATCA 2 cut(s) 280, 477
Kzo9I GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
LmnI GCTCC 4 cut(s) 75, 94, 369, 733
Lsp1109I GCAGC 5 cut(s) 321, 339, 688, 856, 935
LweI GCATC 3 cut(s) 32, 493, 734
MaeI CTAG 2 cut(s) 698, 708
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 5 cut(s) 259, 884, 1002, 1062, 1151
MalI GATC 6 cut(s) 18, 153, 282, 479, 900, 1089
MboI GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
MboII GAAGA 9 cut(s) 130, 133, 194, 439, 637, 854, 971, 975, 1198
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 3 cut(s) 80, 366, 1139
MluCI AATT 4 cut(s) 51, 126, 521, 972
Mly113I GGCGCC 1 cut(s) 441
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 1 cut(s) 990
MnlI CCTC 9 cut(s) 63, 94, 100, 260, 297, 347, 792, 1151, 1226
MroI TCCGGA 1 cut(s) 91
MseI TTAA 2 cut(s) 321, 975
MslI CAYNNNNRTG 2 cut(s) 230, 678
MspA1I CMGCKG 1 cut(s) 1120
MspI CCGG 3 cut(s) 67, 92, 731
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MvnI CGCG 1 cut(s) 1226
NarI GGCGCC 1 cut(s) 441
NcoI CCATGG 2 cut(s) 367, 785
NdeI CATATG 1 cut(s) 1214
NdeII GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
NlaIII CATG 7 cut(s) 65, 371, 589, 625, 677, 683, 789
NlaIV GGNNCC 4 cut(s) 77, 96, 442, 783
NmeAIII GCCGAG 1 cut(s) 405
NmuCI GTSAC 2 cut(s) 259, 1002
NspI RCATGY 1 cut(s) 683
PaeI GCATGC 1 cut(s) 683
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 307
PfeI GAWTC 5 cut(s) 242, 434, 472, 775, 1250
PkrI GCNGC 5 cut(s) 329, 336, 703, 871, 925
PleI GAGTC 1 cut(s) 365
PluTI GGCGCC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 865
Psp124BI GAGCTC 1 cut(s) 1139
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 4 cut(s) 77, 96, 442, 783
PspPI GGNCC 2 cut(s) 344, 371
PstNI CAGNNNCTG 1 cut(s) 1132
PsuI RGATCY 1 cut(s) 898
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 1 cut(s) 929
RsaNI GTAC 1 cut(s) 928
RseI CAYNNNNRTG 2 cut(s) 230, 678
SacI GAGCTC 1 cut(s) 1139
SaqAI TTAA 2 cut(s) 321, 975
SatI GCNGC 5 cut(s) 328, 335, 702, 870, 924
Sau3AI GATC 6 cut(s) 16, 151, 280, 477, 898, 1087
Sau96I GGNCC 2 cut(s) 344, 371
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 3 cut(s) 80, 366, 1139
SfaNI GCATC 3 cut(s) 32, 493, 734
SfoI GGCGCC 1 cut(s) 442
SinI GGWCC 2 cut(s) 344, 371
SmiMI CAYNNNNRTG 2 cut(s) 230, 678
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
SpeI ACTAGT 1 cut(s) 707
SphI GCATGC 1 cut(s) 683
Sse9I AATT 4 cut(s) 51, 126, 521, 972
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 2 cut(s) 73, 377
SspDI GGCGCC 1 cut(s) 440
SspI AATATT 2 cut(s) 645, 850
SspMI CTAG 2 cut(s) 698, 708
SstI GAGCTC 1 cut(s) 1139
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 3 cut(s) 367, 785, 992
TaaI ACNGT 3 cut(s) 200, 884, 1008
TaiI ACGT 1 cut(s) 867
TaqI TCGA 1 cut(s) 252
TasI AATT 4 cut(s) 51, 126, 521, 972
TfiI GAWTC 5 cut(s) 242, 434, 472, 775, 1250
Tru1I TTAA 2 cut(s) 321, 975
Tru9I TTAA 2 cut(s) 321, 975
TscAI CASTG 2 cut(s) 460, 535
TseFI GTSAC 2 cut(s) 259, 1002
TseI GCWGC 5 cut(s) 327, 334, 701, 869, 923
Tsp45I GTSAC 2 cut(s) 259, 1002
TspDTI ATGAA 8 cut(s) 227, 412, 439, 638, 756, 806, 839, 972
TspGWI ACGGA 2 cut(s) 364, 1209
TspRI CASTG 2 cut(s) 460, 535
VpaK11BI GGWCC 2 cut(s) 344, 371
XceI RCATGY 1 cut(s) 683
XspI CTAG 2 cut(s) 698, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.