Rmu_sc0007035.1_g000003

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007035.1
OG0004049
Physical Location & Seq
Forward (+)
21293 .. 21775
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007035.1_g000003.1.cds

Sequence Viewer

Length: 483 bp
atgggaaattgcttggttctgcaacaaaatgttacaaagataatgaaaccagatgggaaagtcctagagtacagagcatccataaaagtttaccaggtgttgtccgagttttctggccacgcaatatctgaggcgactccggtgtaccagcatctccggccagatacaaagctgctcggtggtcgcctgtactatcttgtacctctgcctctgccgtcagagaaggcatcacagaagaaggtgaggttttcaactgatcctgaaggtgaagctcaacaagaaactaaagttgtaagaattaagctagttataagcaagaaacaactgcaggagatgttgggaaagggaggggtttcagttgatgacatggtttccagaattcaatgtcaaacaagcacagataagaagactgacagctccgacaacgatggtagttgtgaagggtggaaaccagttttagaaagcatacctgaagtaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

160

Amino Acids

17.78

Weight (kDa)

8.37

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 2 cut(s) 115, 158
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 4 cut(s) 71, 146, 191, 201
AgsI TTSAA 2 cut(s) 252, 383
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 4 cut(s) 172, 272, 304, 417
AluI AGCT 4 cut(s) 172, 272, 304, 417
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 115, 158
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 253, 278
BalI TGGCCA 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 47, 422
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 95
BfaI CTAG 3 cut(s) 65, 305, 481
BfmI CTRYAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 3 cut(s) 86, 160, 236
BpiI GAAGAC 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 2 cut(s) 117, 160
BsiSI CCGG 2 cut(s) 140, 157
BsnI GGCC 2 cut(s) 117, 160
Bsp143I GATC 1 cut(s) 256
BspANI GGCC 2 cut(s) 117, 160
BspCNI CTCAG 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 452
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 413
BsuRI GGCC 2 cut(s) 117, 160
BtsCI GGATG 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 93
Csp6I GTAC 4 cut(s) 70, 145, 190, 200
CviAII CATG 1 cut(s) 367
CviJI RGCY 6 cut(s) 117, 160, 172, 272, 304, 417
CviKI_1 RGCY 6 cut(s) 117, 160, 172, 272, 304, 417
CviQI GTAC 4 cut(s) 70, 145, 190, 200
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EaeI YGGCCR 2 cut(s) 115, 158
Eco57I CTGAAG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 370
FaiI YATR 4 cut(s) 83, 311, 368, 467
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 3 cut(s) 65, 305, 481
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 2 cut(s) 117, 160
HapII CCGG 2 cut(s) 140, 157
Hin1II CATG 1 cut(s) 370
HinfI GANTC 1 cut(s) 136
HpaII CCGG 2 cut(s) 140, 157
HphI GGTGA 2 cut(s) 253, 278
Hpy166II GTNNAC 3 cut(s) 91, 145, 478
Hpy188I TCNGA 4 cut(s) 106, 130, 220, 421
Hpy188III TCNNGA 2 cut(s) 260, 375
Hpy8I GTNNAC 3 cut(s) 91, 145, 478
HpyAV CCTTC 4 cut(s) 217, 232, 257, 434
HpyCH4V TGCA 2 cut(s) 22, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 3 cut(s) 86, 160, 236
MabI ACCWGGT 1 cut(s) 93
MaeI CTAG 3 cut(s) 65, 305, 481
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 2 cut(s) 247, 418
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 3 cut(s) 7, 297, 378
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 5 cut(s) 124, 213, 219, 237, 341
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 117
MspI CCGG 2 cut(s) 140, 157
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 370
PkrI GCNGC 1 cut(s) 174
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PstI CTGCAG 1 cut(s) 330
RsaI GTAC 4 cut(s) 71, 146, 191, 201
RsaNI GTAC 4 cut(s) 70, 145, 190, 200
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 95
SexAI ACCWGGT 1 cut(s) 93
SfaNI GCATC 3 cut(s) 86, 160, 236
SfcI CTRYAG 1 cut(s) 326
Sse9I AATT 3 cut(s) 7, 297, 378
SspMI CTAG 3 cut(s) 65, 305, 481
StyD4I CCNGG 1 cut(s) 93
TasI AATT 3 cut(s) 7, 297, 378
TatI WGTACW 2 cut(s) 69, 189
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 59
XapI RAATTY 1 cut(s) 378
XspI CTAG 3 cut(s) 65, 305, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.