Prupe.2G317800_v2.0.a1

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0004049
Physical Location & Seq
Reverse (-)
29731674 .. 29732147
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G317800.1

Sequence Viewer

Length: 429 bp
ATGGGCAACTGTTTTGTTCTCTCCAAGCCGGAGAAAGTTTTGAGGGTTGTGAAGACAGACGGGAAAGTTTTAGAATTCAGGGCACCAACTCTTGTTAAGGACATGTTGATGAACTTTTCGGGCTCTGGTATTAGTGAATCAAAGCAAGCCTCAGAGCTTCTCTCTCCTAATTACAAACTGAAGCTTGGGAAGGTTTACTATATGATTCCTCTTCTGGGTTCTGTTGCAAAAAAGGACCGGGCTGCTACAAGAAGGATTAAGATCGTCATAACAAAGCAACAGCTTCAAGAGCTATTGACAAAGCAAATATCAGTGCAGGAGGTTCTTTCAACTTCAGGGCTTGAACAGAAATCATGTTCGTCTAATGATTCTTCAACAAATTGGAAGCCGAAGCTTGAATCCATCCCTGAACTTGAAGGAAGCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

143

Amino Acids

15.76

Weight (kDa)

9.46

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 2 cut(s) 200, 318
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 6 cut(s) 287, 330, 344, 375, 398, 416
AluBI AGCT 5 cut(s) 157, 184, 283, 292, 394
AluI AGCT 5 cut(s) 157, 184, 283, 292, 394
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 85
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 239
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpuMI CCSGG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 260
BseGI GGATG 1 cut(s) 402
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 82
BsiSI CCGG 2 cut(s) 29, 238
BslI CCNNNNNNNGG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 85, 125
Bsp143I GATC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 82
BssMI GATC 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 402
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 2 cut(s) 103, 354
DdeI CTNAG 1 cut(s) 151
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 200, 318
EcoRI GAATTC 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 106, 357
FaiI YATR 5 cut(s) 104, 201, 203, 269, 355
FatI CATG 2 cut(s) 102, 353
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
HapII CCGG 2 cut(s) 29, 238
Hin1II CATG 2 cut(s) 106, 357
HindIII AAGCTT 2 cut(s) 182, 392
HinfI GANTC 4 cut(s) 137, 205, 368, 398
HpaII CCGG 2 cut(s) 29, 238
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 3 cut(s) 184, 246, 410
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 227, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 151
Hsp92II CATG 2 cut(s) 106, 357
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 8 cut(s) 42, 64, 111, 200, 251, 302, 321, 420
Lsp1109I GCAGC 1 cut(s) 229
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 3 cut(s) 64, 203, 363
MhlI GDGCHC 2 cut(s) 85, 125
MluCI AATT 3 cut(s) 74, 169, 379
MnlI CCTC 4 cut(s) 36, 160, 219, 313
MseI TTAA 2 cut(s) 96, 258
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 2 cut(s) 29, 238
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 239
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 106, 357
NlaIV GGNNCC 1 cut(s) 84
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PfeI GAWTC 4 cut(s) 137, 205, 368, 398
PkrI GCNGC 1 cut(s) 244
PscI ACATGT 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 96, 258
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 2 cut(s) 85, 125
SetI ASST 7 cut(s) 159, 186, 195, 285, 294, 324, 396
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 3 cut(s) 74, 169, 379
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 11
TasI AATT 3 cut(s) 74, 169, 379
TfiI GAWTC 4 cut(s) 137, 205, 368, 398
Tru1I TTAA 2 cut(s) 96, 258
Tru9I TTAA 2 cut(s) 96, 258
TscAI CASTG 1 cut(s) 318
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.