Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004049

Physical Location & Seq

Genomic Coordinates Reverse (-)

26879241 .. 26879968

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCGTCTATATATATTTAACATCTCTGTCACTAGCTCTAGCCGTGGAGAAAAAATGGGCAACTGTTTAGTTCTCTCCAAGGAGGACAAAGTTTTGAGGGTTTTGAAGACAGACGGGAAGGTTTTAGAATTCAGAGCGCCAACCCTAGTTAAGGACATTTTATCAAACTTTTCGGGCGTCGGTATCGGTTTATCAAAGCAAGCTTCGGAGCAGCTTTCCCCTGATTGCAAACTGAAGCTCGGGAAGGTTTACTATATGACTCCCCTTCCGGGTTCTGCAGAAAATGACAGTGCTGCTACAAGAAGGATTAAGATGGTCATAACAAAGCAACAGCTTCAAGAGCTACTGACAAAGAAAATATCAGTACAGGAGGTACTTTCAGATTCAAAAGTTTGGAAACCGAAGCTCAGATCCATCCCCGAAGAAATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

9.57

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10120 AT5G03890
fragaria_vesca	FvH4_6g18810 FvH4_7g32830 FvH4_7g32840
malus_domestica	MD12G1036700.v1.1 MD14G1023400.v1.1
prunus_persica	Prupe.2G317800_v2.0.a1 Prupe.7G109500_v2.0.a1
pyrus_communis	pycom01g23580 pycom07g27050
rosa_chinensis	RchiOBHm_Chr1g0382771 RchiOBHm_Chr3g0473821
rosa_laevigata	RLG00000023981 RLG00000026161 RLG00000026162
rosa_multiflora	Rmu_co8470463.1_g000001 Rmu_sc0007035.1_g000003 Rmu_ssc0000322.1_g000020
rosa_roxburghii	Rroxscaffold_4G00277920 Rroxscaffold_6G00407770
rosa_rugosa	Rorug01G0435700 Rorug03G0135700
rosa_samantha	Rh1AG460900 Rh1AG461000 Rh1BG417700 Rh1CG431300 Rh1DG449900 Rh3BG214700 Rh3CG211400 Rh3DG210600
rosa_wichuraiana	Rw1G041070 Rw3G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	366, 375
AfiI	CCNNNNNNNGG	2 cut(s)	151, 269
AgsI	TTSAA	3 cut(s)	106, 338, 387
AluBI	AGCT	7 cut(s)	36, 203, 214, 238, 334, 343, 406
AluI	AGCT	7 cut(s)	36, 203, 214, 238, 334, 343, 406
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	211, 293
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	223, 280
BccI	CCATC	2 cut(s)	307, 422
BceAI	ACGGC	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	270
BfaI	CTAG	3 cut(s)	33, 39, 146
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	2 cut(s)	212, 294
BlsI	GCNGC	2 cut(s)	213, 295
Bme1390I	CCNGG	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	43, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 269
BseDI	CCNNGG	2 cut(s)	43, 78
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	151, 269
BseMII	CTCAG	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	223, 280
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	151, 269
BsoBI	CYCGRG	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	43, 78
BssMI	GATC	1 cut(s)	410
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	65, 290
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	407
BstDSI	CCRYGG	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	223, 280
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	365, 374
CviJI	RGCY	8 cut(s)	36, 42, 203, 214, 238, 334, 343, 406
CviKI_1	RGCY	8 cut(s)	36, 42, 203, 214, 238, 334, 343, 406
CviQI	GTAC	2 cut(s)	365, 374
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	1 cut(s)	412
DpnII	GATC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaiI	YATR	6 cut(s)	10, 12, 14, 255, 257, 320
Fnu4HI	GCNGC	2 cut(s)	212, 294
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	212, 294
FspBI	CTAG	3 cut(s)	33, 39, 146
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	212, 294
HaeII	RGCGCY	1 cut(s)	140
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	259, 383
HpaII	CCGG	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	134, 208, 382, 410
Hpy188III	TCNNGA	2 cut(s)	241, 338
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	112, 238, 275, 297
HpyCH4III	ACNGT	2 cut(s)	65, 290
HpyCH4V	TGCA	2 cut(s)	228, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	407
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	410
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	3 cut(s)	234, 282, 353
Lsp1109I	GCAGC	2 cut(s)	223, 280
MaeI	CTAG	3 cut(s)	33, 39, 146
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	412
MboI	GATC	1 cut(s)	410
MboII	GAAGA	2 cut(s)	118, 434
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	3 cut(s)	76, 90, 364
MseI	TTAA	3 cut(s)	18, 150, 309
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	340
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	213, 295
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	2 cut(s)	366, 375
RsaNI	GTAC	2 cut(s)	365, 374
SaqAI	TTAA	3 cut(s)	18, 150, 309
SatI	GCNGC	2 cut(s)	212, 294
Sau3AI	GATC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	276
Sse9I	AATT	1 cut(s)	128
SspMI	CTAG	3 cut(s)	33, 39, 146
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	65, 290
TaqI	TCGA	1 cut(s)	429
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	18, 150, 309
Tru9I	TTAA	3 cut(s)	18, 150, 309
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	211, 293
Tsp45I	GTSAC	1 cut(s)	28
TspRI	CASTG	1 cut(s)	295
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	3 cut(s)	33, 39, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.