RLG00000026161

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
900567 .. 902153
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026161

Sequence Viewer

Length: 1164 bp
ATGGGGTGTTTTCTTGAGCTGTTATTGCGTTGCGTCGGGAGTTGCTTTGGGATCCGACATCATGACCGGAGGCGGAGCCCTAGGGCCTCTATGAATGCAAAGGTAAAGGCTTTGGAGCCACGGAAGAAGCAGGAAATCGCAAAGCTCCTTGGTCGTCCTGATCTCATTCACACCGAGACCAATCTTTACAAAGATGTAATATTAGACTCTGATATTGTCATGAACCCTGACCTCATTGAAGTGGAATGTGACTCTCACCTTGATGCTGTGAAAAAGCAAGCCTTGTTTGACCAAGTGATTCTTCCACTACGGAGGCCTGAGCTGTTCTCCCACGGCGGCAAGCTCCTTGGTGGTCCACAGAAAGGAGTCTTGCTCCATGGACCACCGCCGAGTAATACTGGCAAAGCAACATTGCTTGCTACAGCCAAATTTATAGCGAAAGAGTCTGGAGCCGTCTTCATCAATGCAAGGAAGATAGCGAATGTGATCATGAGCAATCGGTTCAGCGATTACCACAAGCATGGGCATGCTCAAGTACTGGTTCTAGCCACCACTAGTAAATGTAATCGTGCATCACCTGAGCTTGACGAAGCAATACAACGGCGCCTTCCCCGGGTCTTGGAGATTCGGATGCCCCGGAGAAAGGAGAGGGCAGAGATACTAAAGTTGATTTTGAAGGGCGAGAGAGTTGAACACAATATTGATTATGACCACGTAGCTGCATTGACTGAGGGTTACGCAGTTTCAGATCTTTTCCAACTTTGCAAGAAAGCAGCTTACGTTCCTATCAGAGATCATCTACCATATGAAGACAAGAGTGGAATTAAACAATCGTCTCCGCCTAGGCCAATGTCACGGTTGGATTTAGAGAACGTGGTGATTGTACAACTTATTCCATACTTGAACAAGTTGTTACAGCAAATGACGACTATATCAGCATTACTGGATCAAACTCACAATGAGAATCACCATCAACAGCTGAAACGGATAATGAGCTCTTTAGCCTTTAGTTATAGAGGTAAAGATGACAGTAATGTGATGGAGAAGAGAGACAGAGAAGCAGGAAATACCATACTTGTAAACGATATATCAAGAGTGCGCAGCGGCACCAAAAAAAGGAAGCAAATGGTGGATTCACCGGGACAAACTAATCGCACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

43.75

Weight (kDa)

9.66

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1100
AccB1I GGYRCC 2 cut(s) 603, 1106
AciI CCGC 5 cut(s) 73, 336, 386, 839, 1104
AclWI GGATC 3 cut(s) 46, 59, 954
AcsI RAATTY 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 604
AfaI GTAC 2 cut(s) 537, 885
AfiI CCNNNNNNNGG 5 cut(s) 362, 613, 619, 643, 1116
AgsI TTSAA 4 cut(s) 239, 676, 692, 904
AhlI ACTAGT 1 cut(s) 554
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 9 cut(s) 19, 145, 322, 343, 583, 719, 776, 979, 996
AluI AGCT 9 cut(s) 19, 145, 322, 343, 583, 719, 776, 979, 996
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 3 cut(s) 170, 840, 1044
AlwI GGATC 3 cut(s) 46, 59, 954
Ama87I CYCGRG 1 cut(s) 612
AoxI GGCC 3 cut(s) 84, 314, 845
ApeKI GCWGC 3 cut(s) 719, 773, 1101
ApoI RAATTY 1 cut(s) 428
AspA2I CCTAGG 2 cut(s) 80, 842
AspLEI GCGC 2 cut(s) 606, 1101
AspS9I GGNCC 3 cut(s) 84, 353, 380
AsuC2I CCSGG 4 cut(s) 613, 614, 637, 1140
AsuHPI GGTGA 5 cut(s) 248, 567, 889, 959, 1128
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 2 cut(s) 353, 380
AvrII CCTAGG 2 cut(s) 80, 842
BaeI ACNNNNGTAYC 2 cut(s) 650, 683
BamHI GGATCC 1 cut(s) 51
BanI GGYRCC 2 cut(s) 603, 1106
BanII GRGCYC 2 cut(s) 80, 998
BbsI GAAGAC 2 cut(s) 448, 816
Bbv12I GWGCWC 1 cut(s) 998
BbvI GCAGC 3 cut(s) 706, 785, 1113
BccI CCATC 2 cut(s) 978, 1033
BceAI ACGGC 3 cut(s) 349, 437, 617
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 4 cut(s) 613, 614, 637, 1140
BcoDI GTCTC 3 cut(s) 170, 840, 1044
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 4 cut(s) 81, 545, 555, 843
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 607
BglII AGATCT 1 cut(s) 748
BisI GCNGC 5 cut(s) 337, 720, 774, 1102, 1105
BlnI CCTAGG 2 cut(s) 80, 842
BlsI GCNGC 5 cut(s) 338, 721, 775, 1103, 1106
BmcAI AGTACT 1 cut(s) 537
Bme1390I CCNGG 4 cut(s) 613, 614, 637, 1140
Bme18I GGWCC 2 cut(s) 353, 380
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 3 cut(s) 84, 353, 380
BmiI GGNNCC 6 cut(s) 53, 77, 117, 451, 605, 1108
BmrFI CCNGG 4 cut(s) 613, 614, 637, 1140
BmsI GCATC 3 cut(s) 253, 581, 621
BpiI GAAGAC 2 cut(s) 448, 816
BplI GAGNNNNNCTC 4 cut(s) 311, 343, 357, 389
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 2 cut(s) 318, 579
BpuEI CTTGAG 2 cut(s) 35, 516
BpuMI CCSGG 4 cut(s) 613, 614, 637, 1140
BsaAI YACGTR 1 cut(s) 715
BsaHI GRCGYC 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 5 cut(s) 362, 613, 619, 643, 1116
Bse1I ACTGG 3 cut(s) 403, 543, 948
Bse3DI GCAATG 1 cut(s) 410
BseGI GGATG 1 cut(s) 636
BseLI CCNNNNNNNGG 5 cut(s) 362, 613, 619, 643, 1116
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 3 cut(s) 309, 570, 720
BseNI ACTGG 3 cut(s) 403, 543, 948
BseXI GCAGC 3 cut(s) 706, 785, 1113
BshFI GGCC 3 cut(s) 86, 316, 847
BshNI GGYRCC 2 cut(s) 603, 1106
BsiHKAI GWGCWC 1 cut(s) 998
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 4 cut(s) 67, 613, 637, 1139
BslFI GGGAC 1 cut(s) 1155
BslI CCNNNNNNNGG 5 cut(s) 362, 613, 619, 643, 1116
BsmAI GTCTC 3 cut(s) 170, 840, 1044
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 1 cut(s) 1155
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 3 cut(s) 86, 316, 847
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 80, 998
Bsp1407I TGTACA 1 cut(s) 883
Bsp143I GATC 6 cut(s) 51, 160, 486, 748, 793, 946
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 5 cut(s) 73, 336, 386, 839, 1104
BspANI GGCC 3 cut(s) 86, 316, 847
BspCNI CTCAG 3 cut(s) 310, 571, 721
BspHI TCATGA 3 cut(s) 61, 219, 489
BspLI GGNNCC 6 cut(s) 53, 77, 117, 451, 605, 1108
BspPI GGATC 3 cut(s) 46, 59, 954
BspT107I GGYRCC 2 cut(s) 603, 1106
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 883
BsrI ACTGG 3 cut(s) 403, 543, 948
BssMI GATC 6 cut(s) 51, 160, 486, 748, 793, 946
BssNI GRCGYC 1 cut(s) 604
BssT1I CCWWGG 5 cut(s) 80, 148, 346, 376, 842
Bst4CI ACNGT 2 cut(s) 858, 1031
Bst6I CTCTTC 1 cut(s) 1040
BstACI GRCGYC 1 cut(s) 604
BstAUI TGTACA 1 cut(s) 883
BstBAI YACGTR 1 cut(s) 715
BstC8I GCNNGC 4 cut(s) 279, 341, 417, 528
BstDEI CTNAG 3 cut(s) 318, 579, 729
BstDSI CCRYGG 3 cut(s) 119, 331, 376
BstF5I GGATG 1 cut(s) 636
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 2 cut(s) 606, 1101
BstKTI GATC 6 cut(s) 54, 163, 489, 751, 796, 949
BstMAI GTCTC 3 cut(s) 170, 840, 1044
BstMBI GATC 6 cut(s) 51, 160, 486, 748, 793, 946
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 4 cut(s) 611, 612, 635, 1138
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 706, 785, 1113
BstV2I GAAGAC 2 cut(s) 448, 816
BstX2I RGATCY 2 cut(s) 51, 748
BstXI CCANNNNNNTGG 1 cut(s) 521
BstYI RGATCY 2 cut(s) 51, 748
BsuRI GGCC 3 cut(s) 86, 316, 847
BtgI CCRYGG 3 cut(s) 119, 331, 376
BtsCI GGATG 1 cut(s) 636
Cac8I GCNNGC 4 cut(s) 279, 341, 417, 528
CciI TCATGA 3 cut(s) 61, 219, 489
CfoI GCGC 2 cut(s) 606, 1101
Cfr13I GGNCC 3 cut(s) 84, 353, 380
Cfr9I CCCGGG 1 cut(s) 612
CseI GACGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 536, 884
CviAII CATG 6 cut(s) 62, 220, 377, 490, 521, 527
CviQI GTAC 2 cut(s) 536, 884
DdeI CTNAG 3 cut(s) 318, 579, 729
DinI GGCGCC 1 cut(s) 605
DpnI GATC 6 cut(s) 53, 162, 488, 750, 795, 948
DpnII GATC 6 cut(s) 51, 160, 486, 748, 793, 946
Eam1104I CTCTTC 1 cut(s) 1040
EarI CTCTTC 1 cut(s) 1040
EciI GGCGGA 2 cut(s) 88, 828
Ecl136II GAGCTC 1 cut(s) 996
Eco130I CCWWGG 5 cut(s) 80, 148, 346, 376, 842
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 2 cut(s) 80, 998
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 353, 380
Eco53kI GAGCTC 1 cut(s) 996
Eco88I CYCGRG 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 996
EcoO109I RGGNCCY 1 cut(s) 84
EcoT14I CCWWGG 5 cut(s) 80, 148, 346, 376, 842
EcoT38I GRGCYC 2 cut(s) 80, 998
EgeI GGCGCC 1 cut(s) 605
EheI GGCGCC 1 cut(s) 605
ErhI CCWWGG 5 cut(s) 80, 148, 346, 376, 842
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 6 cut(s) 65, 223, 380, 493, 524, 530
FalI AAGNNNNNCTT 4 cut(s) 266, 298, 285, 317
FaqI GGGAC 1 cut(s) 1155
FatI CATG 6 cut(s) 61, 219, 376, 489, 520, 526
FauNDI CATATG 1 cut(s) 805
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 5 cut(s) 337, 720, 774, 1102, 1105
FokI GGATG 1 cut(s) 643
FriOI GRGCYC 2 cut(s) 80, 998
Fsp4HI GCNGC 5 cut(s) 337, 720, 774, 1102, 1105
FspBI CTAG 4 cut(s) 81, 545, 555, 843
FspI TGCGCA 1 cut(s) 1100
GlaI GCGC 2 cut(s) 605, 1100
GluI GCNGC 5 cut(s) 337, 720, 774, 1102, 1105
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 607
HaeIII GGCC 3 cut(s) 86, 316, 847
HapII CCGG 4 cut(s) 67, 613, 637, 1139
HgaI GACGC 1 cut(s) 22
HhaI GCGC 2 cut(s) 606, 1101
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 6 cut(s) 65, 223, 380, 493, 524, 530
Hin6I GCGC 2 cut(s) 604, 1099
HinP1I GCGC 2 cut(s) 604, 1099
HinfI GANTC 8 cut(s) 206, 251, 298, 366, 443, 625, 964, 1133
HpaII CCGG 4 cut(s) 67, 613, 637, 1139
HphI GGTGA 5 cut(s) 248, 567, 889, 959, 1128
Hpy166II GTNNAC 2 cut(s) 356, 1081
Hpy188I TCNGA 5 cut(s) 56, 211, 630, 748, 791
Hpy188III TCNNGA 8 cut(s) 14, 37, 62, 158, 220, 447, 490, 1092
Hpy8I GTNNAC 2 cut(s) 356, 1081
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 617, 670
HpyCH4III ACNGT 2 cut(s) 858, 1031
HpyCH4IV ACGT 3 cut(s) 714, 780, 873
HpyCH4V TGCA 5 cut(s) 98, 467, 572, 722, 765
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 3 cut(s) 318, 579, 729
HpySE526I ACGT 3 cut(s) 714, 780, 873
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 6 cut(s) 65, 223, 380, 493, 524, 530
HspAI GCGC 2 cut(s) 604, 1099
KasI GGCGCC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 6 cut(s) 51, 160, 486, 748, 793, 946
LmnI GCTCC 6 cut(s) 75, 115, 150, 348, 378, 449
Lsp1109I GCAGC 3 cut(s) 706, 785, 1113
LweI GCATC 3 cut(s) 253, 581, 621
MaeI CTAG 4 cut(s) 81, 545, 555, 843
MaeII ACGT 3 cut(s) 714, 780, 873
MaeIII GTNAC 4 cut(s) 248, 734, 852, 912
MalI GATC 6 cut(s) 53, 162, 488, 750, 795, 948
MboI GATC 6 cut(s) 51, 160, 486, 748, 793, 946
MboII GAAGA 6 cut(s) 136, 293, 448, 484, 821, 1057
MfeI CAATTG 1 cut(s) 1159
MflI RGATCY 2 cut(s) 51, 748
MhlI GDGCHC 2 cut(s) 80, 998
MluCI AATT 3 cut(s) 428, 822, 1159
Mly113I GGCGCC 1 cut(s) 604
MlyI GAGTC 4 cut(s) 200, 245, 375, 452
MmeI TCCRAC 3 cut(s) 79, 781, 840
MnlI CCTC 7 cut(s) 63, 97, 242, 306, 642, 724, 1010
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 4 cut(s) 239, 261, 519, 525
MspA1I CMGCKG 2 cut(s) 979, 1104
MspI CCGG 4 cut(s) 67, 613, 637, 1139
MspR9I CCNGG 4 cut(s) 613, 614, 637, 1140
MunI CAATTG 1 cut(s) 1159
Mva1269I GAATGC 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 25
NarI GGCGCC 1 cut(s) 604
NciI CCSGG 4 cut(s) 613, 614, 637, 1140
NcoI CCATGG 1 cut(s) 376
NdeI CATATG 1 cut(s) 805
NdeII GATC 6 cut(s) 51, 160, 486, 748, 793, 946
NlaIII CATG 6 cut(s) 65, 223, 380, 493, 524, 530
NlaIV GGNNCC 6 cut(s) 53, 77, 117, 451, 605, 1108
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 248, 852
NsbI TGCGCA 1 cut(s) 1100
NspI RCATGY 1 cut(s) 530
PaeI GCATGC 1 cut(s) 530
PagI TCATGA 3 cut(s) 61, 219, 489
PceI AGGCCT 1 cut(s) 316
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 4 cut(s) 298, 625, 964, 1133
PkrI GCNGC 5 cut(s) 338, 721, 775, 1103, 1106
PleI GAGTC 4 cut(s) 200, 245, 374, 451
PluTI GGCGCC 1 cut(s) 607
PpsI GAGTC 4 cut(s) 200, 245, 374, 451
Ppu21I YACGTR 1 cut(s) 715
Psp124BI GAGCTC 1 cut(s) 998
PspN4I GGNNCC 6 cut(s) 53, 77, 117, 451, 605, 1108
PspPI GGNCC 3 cut(s) 84, 353, 380
PsuI RGATCY 2 cut(s) 51, 748
PvuII CAGCTG 1 cut(s) 979
RsaI GTAC 2 cut(s) 537, 885
RsaNI GTAC 2 cut(s) 536, 884
RseI CAYNNNNRTG 4 cut(s) 239, 261, 519, 525
SacI GAGCTC 1 cut(s) 998
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 5 cut(s) 337, 720, 774, 1102, 1105
Sau3AI GATC 6 cut(s) 51, 160, 486, 748, 793, 946
Sau96I GGNCC 3 cut(s) 84, 353, 380
ScaI AGTACT 1 cut(s) 537
SchI GAGTC 4 cut(s) 200, 245, 375, 452
ScrFI CCNGG 4 cut(s) 613, 614, 637, 1140
SduI GDGCHC 2 cut(s) 80, 998
SfaNI GCATC 3 cut(s) 253, 581, 621
SfcI CTRYAG 1 cut(s) 420
SfoI GGCGCC 1 cut(s) 605
SinI GGWCC 2 cut(s) 353, 380
SmaI CCCGGG 1 cut(s) 614
SmiMI CAYNNNNRTG 4 cut(s) 239, 261, 519, 525
SmlI CTYRAG 2 cut(s) 14, 531
SmoI CTYRAG 2 cut(s) 14, 531
SpeI ACTAGT 1 cut(s) 554
SphI GCATGC 1 cut(s) 530
Sse9I AATT 3 cut(s) 428, 822, 1159
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 5 cut(s) 73, 336, 386, 839, 1104
SspDI GGCGCC 1 cut(s) 603
SspI AATATT 2 cut(s) 201, 700
SspMI CTAG 4 cut(s) 81, 545, 555, 843
SstI GAGCTC 1 cut(s) 998
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 4 cut(s) 611, 612, 635, 1138
StyI CCWWGG 5 cut(s) 80, 148, 346, 376, 842
TaaI ACNGT 2 cut(s) 858, 1031
TaiI ACGT 3 cut(s) 717, 783, 876
TasI AATT 3 cut(s) 428, 822, 1159
TatI WGTACW 2 cut(s) 535, 883
TauI GCSGC 2 cut(s) 339, 1107
TfiI GAWTC 4 cut(s) 298, 625, 964, 1133
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TseFI GTSAC 2 cut(s) 248, 852
TseI GCWGC 3 cut(s) 719, 773, 1101
Tsp45I GTSAC 2 cut(s) 248, 852
TspDTI ATGAA 4 cut(s) 107, 236, 448, 822
TspGWI ACGGA 3 cut(s) 136, 325, 1000
TspMI CCCGGG 1 cut(s) 612
VpaK11BI GGWCC 2 cut(s) 353, 380
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 530
XmaI CCCGGG 1 cut(s) 612
XmaJI CCTAGG 2 cut(s) 80, 842
XspI CTAG 4 cut(s) 81, 545, 555, 843
ZrmI AGTACT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.