Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004049

Physical Location & Seq

Genomic Coordinates Reverse (-)

53489162 .. 53492556

Gene Structure 3395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0435700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTATACCATTAAGCCCAGACCCCAGTCACTCTCGCGATCTCACCCTAGTCCCGACTCGGAGACGCAGTCACGCTCTCAGTCTCTCCCACTTCCTCAGTTCCTTCTCCTCTCGTCAGTCGCCGCCTGCCTCAGCCGGCTCTCCCGAGTCCCGACTCCATCTCCGATTACACCAGTTAAAAAACGTCGGGCAAGCAAAACAGCTTCGAGACTGAGAGACCCAACCGCGCTACACTCGATGCCCGAATCTCTCATTAATGTGGTTGTCAAGGAGTTGGAAATTAGAGGGAGTCTGACACAGAACTTTCAGCAATATCTCTTGCACGAGGCTAATCAGCGCTTGGACCAAGCATCAGACAAATACAATCGTATGGAGGCGAGACATTTTTTGGATATGTTGAGTAAAGAGCTACCCATGAATATATGCATCACTGCAGCTTACGGCTTCCATTTTCAAGTCAATTATGACATTTACAGTGTACAATTTCTGGCAATTTTCTCAACCTTAACAGAGTTGTCCCTTGAGATATTCACTTATTGCATCGAGAATGACATTGATATGGATGAGTTTTTTAAATATCCGGAAACTAGTAATGAGGTAGAGATGGAGAGGAGAATTCGGAGTGTATTAGGAATCGATGTCGAGATTGGAGGAAGTGGAGATATTAGAGGGAAGTTTGAAAGTAAAAACATGTTTGATCTGTTGCAAGAAGGGGATGGACAGAGTCAGAGAGGAGATGGGAGTAGTGGTGGTAATGGCAGCCACGTAGGGAGTGATCTTTCTACTGCTGTTGAAGAAGTCAGTGACAAATTCCGCAGTAGAAAGATGTGGAAAGATCTTCCTTTCTACTGCGGAATTTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

288

Amino Acids

32.6

Weight (kDa)

6.01

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10120 AT5G03890
fragaria_vesca	FvH4_6g18810 FvH4_7g32830 FvH4_7g32840
malus_domestica	MD12G1036700.v1.1 MD14G1023400.v1.1
prunus_persica	Prupe.2G317800_v2.0.a1 Prupe.7G109500_v2.0.a1
pyrus_communis	pycom01g23580 pycom07g27050
rosa_chinensis	RchiOBHm_Chr1g0382771 RchiOBHm_Chr3g0473821
rosa_laevigata	RLG00000023981 RLG00000026161 RLG00000026162
rosa_multiflora	Rmu_co8470463.1_g000001 Rmu_sc0007035.1_g000003 Rmu_ssc0000322.1_g000020
rosa_roxburghii	Rroxscaffold_4G00277920 Rroxscaffold_6G00407770
rosa_rugosa	Rorug01G0435700 Rorug03G0135700
rosa_samantha	Rh1AG460900 Rh1AG461000 Rh1BG417700 Rh1CG431300 Rh1DG449900 Rh3BG214700 Rh3CG211400 Rh3DG210600
rosa_wichuraiana	Rw1G041070 Rw3G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	37, 227
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	4 cut(s)	123, 225, 814, 852
AcsI	RAATTY	3 cut(s)	615, 809, 855
AfaI	GTAC	1 cut(s)	480
AfeI	AGCGCT	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	3 cut(s)	455, 680, 794
AhlI	ACTAGT	1 cut(s)	587
AluBI	AGCT	3 cut(s)	203, 409, 437
AluI	AGCT	3 cut(s)	203, 409, 437
Alw26I	GTCTC	5 cut(s)	56, 87, 202, 210, 373
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	580
Aor51HI	AGCGCT	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	434, 759
ApoI	RAATTY	3 cut(s)	615, 809, 855
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	229, 339
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	446, 771
BccI	CCATC	4 cut(s)	166, 598, 710, 731
BceAI	ACGGC	1 cut(s)	457
BcoDI	GTCTC	5 cut(s)	56, 87, 202, 210, 373
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	2 cut(s)	48, 588
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	340
BglII	AGATCT	1 cut(s)	835
BisI	GCNGC	3 cut(s)	123, 435, 760
BlsI	GCNGC	3 cut(s)	124, 436, 761
Bme18I	GGWCC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	343
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	4 cut(s)	228, 359, 435, 549
BmuI	ACTGGG	1 cut(s)	19
BoxI	GACNNNNGTC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	636
BsaAI	YACGTR	1 cut(s)	766
BsaI	GGTCTC	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 145, 175, 733, 763
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	25, 173
BseAI	TCCGGA	1 cut(s)	580
BseCI	ATCGAT	1 cut(s)	636
BseGI	GGATG	2 cut(s)	568, 721
BseMII	CTCAG	4 cut(s)	92, 110, 145, 203
BseNI	ACTGG	2 cut(s)	25, 173
BseRI	GAGGAG	3 cut(s)	98, 625, 747
BseXI	GCAGC	2 cut(s)	446, 771
Bsh1236I	CGCG	2 cut(s)	37, 227
BshVI	ATCGAT	1 cut(s)	636
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	136, 581
BslFI	GGGAC	3 cut(s)	36, 134, 502
BsmAI	GTCTC	5 cut(s)	56, 87, 202, 210, 373
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	3 cut(s)	36, 134, 502
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	580
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	38, 697, 775, 835
Bsp68I	TCGCGA	1 cut(s)	37
BspACI	CCGC	4 cut(s)	123, 225, 814, 852
BspCNI	CTCAG	4 cut(s)	91, 109, 144, 204
BspDI	ATCGAT	1 cut(s)	636
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	2 cut(s)	37, 227
BspMAI	CTGCAG	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	25, 173
BssAI	RCCGGY	1 cut(s)	135
BssMI	GATC	4 cut(s)	38, 697, 775, 835
BssNAI	GTATAC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	323
Bst1107I	GTATAC	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	478
BstBAI	YACGTR	1 cut(s)	766
BstC8I	GCNNGC	3 cut(s)	127, 137, 193
BstDEI	CTNAG	4 cut(s)	78, 96, 131, 212
BstF5I	GGATG	2 cut(s)	568, 721
BstFNI	CGCG	2 cut(s)	37, 227
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	229, 339
BstKTI	GATC	4 cut(s)	41, 700, 778, 838
BstMAI	GTCTC	5 cut(s)	56, 87, 202, 210, 373
BstMBI	GATC	4 cut(s)	38, 697, 775, 835
BstNSI	RCATGY	1 cut(s)	694
BstPAI	GACNNNNGTC	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	2 cut(s)	37, 227
BstV1I	GCAGC	2 cut(s)	446, 771
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BstZ17I	GTATAC	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	636
BsuTUI	ATCGAT	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	568, 721
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	4 cut(s)	429, 481, 808, 862
BtuMI	TCGCGA	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	127, 137, 193
CfoI	GCGC	2 cut(s)	229, 339
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	343
ClaI	ATCGAT	1 cut(s)	636
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	2 cut(s)	415, 691
CviJI	RGCY	9 cut(s)	16, 135, 139, 203, 329, 409, 437, 444, 762
CviKI_1	RGCY	9 cut(s)	16, 135, 139, 203, 329, 409, 437, 444, 762
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	4 cut(s)	78, 96, 131, 212
DpnI	GATC	4 cut(s)	40, 699, 777, 837
DpnII	GATC	4 cut(s)	38, 697, 775, 835
DraI	TTTAAA	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	343
Eco47III	AGCGCT	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	418, 694
FaiI	YATR	9 cut(s)	6, 371, 395, 416, 422, 424, 465, 560, 692
FaqI	GGGAC	3 cut(s)	36, 134, 502
FatI	CATG	2 cut(s)	414, 690
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	123, 435, 760
FokI	GGATG	2 cut(s)	575, 728
Fsp4HI	GCNGC	3 cut(s)	123, 435, 760
FspBI	CTAG	2 cut(s)	48, 588
GlaI	GCGC	2 cut(s)	228, 338
GluI	GCNGC	3 cut(s)	123, 435, 760
HaeII	RGCGCY	1 cut(s)	340
HapII	CCGG	2 cut(s)	136, 581
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	229, 339
Hin1II	CATG	2 cut(s)	418, 694
Hin6I	GCGC	2 cut(s)	227, 337
HinP1I	GCGC	2 cut(s)	227, 337
HinfI	GANTC	7 cut(s)	56, 147, 154, 245, 289, 633, 724
HpaII	CCGG	2 cut(s)	136, 581
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	6, 479
Hpy188I	TCNGA	6 cut(s)	61, 165, 294, 355, 621, 729
Hpy188III	TCNNGA	8 cut(s)	36, 53, 144, 151, 207, 544, 581, 643
Hpy8I	GTNNAC	2 cut(s)	6, 479
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	2 cut(s)	113, 704
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	2 cut(s)	184, 765
HpyCH4V	TGCA	5 cut(s)	322, 426, 434, 540, 706
HpyF3I	CTNAG	4 cut(s)	78, 96, 131, 212
HpySE526I	ACGT	2 cut(s)	184, 765
Hsp92II	CATG	2 cut(s)	418, 694
HspAI	GCGC	2 cut(s)	227, 337
Kpn2I	TCCGGA	1 cut(s)	580
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	4 cut(s)	38, 697, 775, 835
LpnPI	CCDG	7 cut(s)	31, 38, 139, 149, 186, 473, 594
Lsp1109I	GCAGC	2 cut(s)	446, 771
LweI	GCATC	4 cut(s)	228, 359, 435, 549
MaeI	CTAG	2 cut(s)	48, 588
MaeII	ACGT	2 cut(s)	184, 765
MaeIII	GTNAC	4 cut(s)	27, 69, 803, 860
MalI	GATC	4 cut(s)	40, 699, 777, 837
MboI	GATC	4 cut(s)	38, 697, 775, 835
MboII	GAAGA	2 cut(s)	806, 830
MflI	RGATCY	1 cut(s)	835
MluCI	AATT	7 cut(s)	279, 460, 482, 492, 615, 809, 855
MlyI	GAGTC	5 cut(s)	50, 148, 156, 298, 733
MmeI	TCCRAC	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	580
MroNI	GCCGGC	1 cut(s)	135
MseI	TTAA	5 cut(s)	12, 177, 255, 506, 573
MslI	CAYNNNNRTG	2 cut(s)	257, 557
MspI	CCGG	2 cut(s)	136, 581
MvnI	CGCG	2 cut(s)	37, 227
NaeI	GCCGGC	1 cut(s)	137
NdeII	GATC	4 cut(s)	38, 697, 775, 835
NgoMIV	GCCGGC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	418, 694
NmuCI	GTSAC	4 cut(s)	27, 69, 803, 860
NruI	TCGCGA	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	428
NspI	RCATGY	1 cut(s)	694
PciI	ACATGT	1 cut(s)	690
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	245, 633
PflFI	GACNNNGTC	2 cut(s)	67, 723
PkrI	GCNGC	3 cut(s)	124, 436, 761
PleI	GAGTC	5 cut(s)	50, 148, 155, 297, 732
PpsI	GAGTC	5 cut(s)	50, 148, 155, 297, 732
Ppu21I	YACGTR	1 cut(s)	766
PscI	ACATGT	1 cut(s)	690
PshAI	GACNNNNGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	343
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	835
PsyI	GACNNNGTC	2 cut(s)	67, 723
RruI	TCGCGA	1 cut(s)	37
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	2 cut(s)	257, 557
SaqAI	TTAA	5 cut(s)	12, 177, 255, 506, 573
SatI	GCNGC	3 cut(s)	123, 435, 760
Sau3AI	GATC	4 cut(s)	38, 697, 775, 835
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	5 cut(s)	50, 148, 156, 298, 733
SetI	ASST	7 cut(s)	187, 205, 411, 439, 506, 600, 768
SfaNI	GCATC	4 cut(s)	228, 359, 435, 549
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	2 cut(s)	257, 557
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	7 cut(s)	279, 460, 482, 492, 615, 809, 855
SsiI	CCGC	4 cut(s)	123, 225, 814, 852
SspMI	CTAG	2 cut(s)	48, 588
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	2 cut(s)	187, 768
TaqI	TCGA	5 cut(s)	206, 236, 543, 636, 642
TasI	AATT	7 cut(s)	279, 460, 482, 492, 615, 809, 855
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	245, 633
Tru1I	TTAA	5 cut(s)	12, 177, 255, 506, 573
Tru9I	TTAA	5 cut(s)	12, 177, 255, 506, 573
TscAI	CASTG	3 cut(s)	436, 481, 808
TseFI	GTSAC	4 cut(s)	27, 69, 803, 860
TseI	GCWGC	2 cut(s)	434, 759
Tsp45I	GTSAC	4 cut(s)	27, 69, 803, 860
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	436, 481, 808
Tth111I	GACNNNGTC	2 cut(s)	67, 723
VpaK11BI	GGWCC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	3 cut(s)	615, 809, 855
XceI	RCATGY	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	48, 588
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.