Rh1AG461000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004049
Physical Location & Seq
Reverse (-)
67819786 .. 67820982
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG461000.1

Sequence Viewer

Length: 1197 bp
ATGGGGTGTTTTCTTGAACTGTTATTGCGTTGCTTCGGGGGTTGCTTTGGGATCCAACATCATGACCGGAGGCGGAGCCCCTTAGCCTCTATGAATGCAAAGGTAAAGGCTTTGGAGCCACGGAAGAAGAAGGAAATCGCAAAGCTCCTTGGTCGTCATGATCTCATTCACACCGAGACCAATCTTTACGAAGATGTAATGTTAGACTGTGATATTGTCATGAACCCTGACCTCATTGAAGTGGAATGTGACTCTCACCTTGATGCTGTGAAAAAGCAAGCCTTGTTTGACCAAGTGATTCTTCCACTACGGAGGCCTGAGCTGTTCTCCCACGGCGGCAAGCTCCTCGGTGGTCCACAGAAAGGAGTCTTGCTCCATGGACCACCGCCGAGTAATACTGGCAAAGCAACATTGCTTGCTACAGCCAAATTTATAGCGAAAGAGTCTGGAGCCGTCTTCATCAATGCAAGGAAGATAGCGAATGTGATCATGAGCAATCGGTTCAGCGATTGTGATTCTGCAGAGAAACGGCAACTCATTGCTGCTGTGTTTAGCCTAGCTTATAAACTCCAGCCTGCTGTCATATTTATTAATGACATGGATAGTTTCTTGGGGCAACTCTCCCAAACCAACATGAAAACTGAGTTCATGGACTTATGGGATTGCTTTTTAACAGACCACAAGCATGAGCATGCTCAAGTACTGGTTCTAGCCACCACTAGTAAATGTAATCGTGCATCACCAGAGCTTGACGAAGCAATACAATGGCGCCTTCCTCGGGTCTTGGAGATTCGGATGCCCCGGAGGAAGGAGAGGGCAGAGATACTAAAGTTGATTTTGAAGGGCGAGAGAGTTGAACACAATATTGATTATGACCACGTAGCTGCATTGACTGAGGGTTACGCAGTTTCAGATCTTTTCCAACTTTGCAAGAAAGCAGCTTACGTTCCTATCAGAGATCATCTACTGTATGAAGAAAAGAGTGGAATTAAACAATCGTCTCCGCCAAGGCCAATGTCACAGTTGGATTTAGAGAACGTGATGATTGTACAACTTATTCCATACTTGAACAAGTTGTTACAGCAAATGACGACTATATCAGCATTACTGGATCAAACTCACAATGAGAATCACCATCAACAGCTGAAACGGATAGTGAGCTCTTTAGCCTTTAGTTATAGAGGTAAAGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA

Protein Analysis

398

Amino Acids

45.15

Weight (kDa)

8.28

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 123 - 264 2.1e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 768
AciI CCGC 4 cut(s) 73, 336, 386, 1004
AclWI GGATC 3 cut(s) 46, 59, 1119
AcsI RAATTY 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 769
AfaI GTAC 2 cut(s) 702, 1050
AfiI CCNNNNNNNGG 3 cut(s) 362, 778, 808
AgsI TTSAA 5 cut(s) 17, 239, 841, 857, 1069
AhlI ACTAGT 1 cut(s) 719
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 9 cut(s) 145, 322, 343, 560, 748, 884, 941, 1144, 1161
AluI AGCT 9 cut(s) 145, 322, 343, 560, 748, 884, 941, 1144, 1161
Alw21I GWGCWC 1 cut(s) 1163
Alw26I GTCTC 2 cut(s) 170, 1005
AlwI GGATC 3 cut(s) 46, 59, 1119
Ama87I CYCGRG 1 cut(s) 777
AoxI GGCC 2 cut(s) 314, 1010
ApeKI GCWGC 3 cut(s) 542, 884, 938
ApoI RAATTY 1 cut(s) 428
AseI ATTAAT 1 cut(s) 591
AspLEI GCGC 1 cut(s) 771
AspS9I GGNCC 2 cut(s) 353, 380
AsuC2I CCSGG 1 cut(s) 802
AsuHPI GGTGA 3 cut(s) 248, 732, 1124
AvaI CYCGRG 1 cut(s) 777
AvaII GGWCC 2 cut(s) 353, 380
BaeI ACNNNNGTAYC 2 cut(s) 815, 848
BamHI GGATCC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 768
BanII GRGCYC 2 cut(s) 80, 1163
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 1163
BbvI GCAGC 3 cut(s) 529, 871, 950
BccI CCATC 1 cut(s) 1143
BceAI ACGGC 3 cut(s) 349, 437, 545
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 1 cut(s) 802
BcoDI GTCTC 2 cut(s) 170, 1005
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 3 cut(s) 557, 710, 720
BfmI CTRYAG 2 cut(s) 420, 519
BfoI RGCGCY 1 cut(s) 772
BglII AGATCT 1 cut(s) 913
BisI GCNGC 4 cut(s) 337, 543, 885, 939
BlsI GCNGC 4 cut(s) 338, 544, 886, 940
BmcAI AGTACT 1 cut(s) 702
Bme1390I CCNGG 1 cut(s) 802
Bme18I GGWCC 2 cut(s) 353, 380
BmeT110I CYCGRG 1 cut(s) 777
BmgT120I GGNCC 2 cut(s) 353, 380
BmiI GGNNCC 5 cut(s) 53, 77, 117, 451, 770
BmrFI CCNGG 1 cut(s) 802
BmsI GCATC 3 cut(s) 253, 746, 786
BpiI GAAGAC 1 cut(s) 448
BplI GAGNNNNNCTC 4 cut(s) 311, 343, 357, 389
BpmI CTGGAG 2 cut(s) 468, 554
Bpu10I CCTNAGC 2 cut(s) 82, 318
BpuEI CTTGAG 1 cut(s) 681
BpuMI CCSGG 1 cut(s) 802
BsaAI YACGTR 1 cut(s) 880
BsaHI GRCGYC 1 cut(s) 769
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 8 cut(s) 119, 148, 331, 346, 376, 776, 800, 1007
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 778, 808
Bse1I ACTGG 3 cut(s) 403, 708, 1113
Bse3DI GCAATG 2 cut(s) 410, 537
BseDI CCNNGG 8 cut(s) 119, 148, 331, 346, 376, 776, 800, 1007
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 3 cut(s) 362, 778, 808
BseMI GCAATG 2 cut(s) 410, 537
BseMII CTCAG 3 cut(s) 309, 633, 885
BseNI ACTGG 3 cut(s) 403, 708, 1113
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 3 cut(s) 529, 871, 950
BshFI GGCC 2 cut(s) 316, 1012
BshNI GGYRCC 1 cut(s) 768
BsiHKAI GWGCWC 1 cut(s) 1163
BsiHKCI CYCGRG 1 cut(s) 777
BsiSI CCGG 2 cut(s) 67, 802
BslI CCNNNNNNNGG 3 cut(s) 362, 778, 808
BsmAI GTCTC 2 cut(s) 170, 1005
BsmBI CGTCTC 1 cut(s) 1005
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 2 cut(s) 316, 1012
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 777
Bsp1286I GDGCHC 2 cut(s) 80, 1163
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 4 cut(s) 73, 336, 386, 1004
BspANI GGCC 2 cut(s) 316, 1012
BspCNI CTCAG 3 cut(s) 310, 634, 886
BspHI TCATGA 4 cut(s) 61, 157, 219, 489
BspLI GGNNCC 5 cut(s) 53, 77, 117, 451, 770
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 3 cut(s) 46, 59, 1119
BspT107I GGYRCC 1 cut(s) 768
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 410, 537
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 3 cut(s) 403, 708, 1113
BssECI CCNNGG 8 cut(s) 119, 148, 331, 346, 376, 776, 800, 1007
BssMI GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
BssNI GRCGYC 1 cut(s) 769
BssT1I CCWWGG 3 cut(s) 148, 376, 1007
Bst4CI ACNGT 4 cut(s) 21, 209, 969, 1023
BstACI GRCGYC 1 cut(s) 769
BstAUI TGTACA 1 cut(s) 1048
BstBAI YACGTR 1 cut(s) 880
BstC8I GCNNGC 5 cut(s) 279, 341, 417, 576, 693
BstDEI CTNAG 4 cut(s) 82, 318, 642, 894
BstDSI CCRYGG 3 cut(s) 119, 331, 376
BstF5I GGATG 1 cut(s) 801
BstH2I RGCGCY 1 cut(s) 772
BstHHI GCGC 1 cut(s) 771
BstKTI GATC 6 cut(s) 54, 163, 489, 916, 961, 1114
BstMAI GTCTC 2 cut(s) 170, 1005
BstMBI GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 800
BstSFI CTRYAG 2 cut(s) 420, 519
BstV1I GCAGC 3 cut(s) 529, 871, 950
BstV2I GAAGAC 1 cut(s) 448
BstX2I RGATCY 2 cut(s) 51, 913
BstYI RGATCY 2 cut(s) 51, 913
BsuRI GGCC 2 cut(s) 316, 1012
BtgI CCRYGG 3 cut(s) 119, 331, 376
BtsCI GGATG 1 cut(s) 801
Cac8I GCNNGC 5 cut(s) 279, 341, 417, 576, 693
CciI TCATGA 4 cut(s) 61, 157, 219, 489
CfoI GCGC 1 cut(s) 771
Cfr13I GGNCC 2 cut(s) 353, 380
Csp6I GTAC 2 cut(s) 701, 1049
CviQI GTAC 2 cut(s) 701, 1049
DdeI CTNAG 4 cut(s) 82, 318, 642, 894
DinI GGCGCC 1 cut(s) 770
DpnI GATC 6 cut(s) 53, 162, 488, 915, 960, 1113
DpnII GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
EciI GGCGGA 2 cut(s) 88, 993
Ecl136II GAGCTC 1 cut(s) 1161
Eco130I CCWWGG 3 cut(s) 148, 376, 1007
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 2 cut(s) 80, 1163
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 353, 380
Eco53kI GAGCTC 1 cut(s) 1161
Eco88I CYCGRG 1 cut(s) 777
EcoICRI GAGCTC 1 cut(s) 1161
EcoT14I CCWWGG 3 cut(s) 148, 376, 1007
EcoT38I GRGCYC 2 cut(s) 80, 1163
EgeI GGCGCC 1 cut(s) 770
EheI GGCGCC 1 cut(s) 770
ErhI CCWWGG 3 cut(s) 148, 376, 1007
Esp3I CGTCTC 1 cut(s) 1005
FalI AAGNNNNNCTT 4 cut(s) 266, 298, 285, 317
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 4 cut(s) 337, 543, 885, 939
FokI GGATG 1 cut(s) 808
FriOI GRGCYC 2 cut(s) 80, 1163
Fsp4HI GCNGC 4 cut(s) 337, 543, 885, 939
FspBI CTAG 3 cut(s) 557, 710, 720
GlaI GCGC 1 cut(s) 770
GluI GCNGC 4 cut(s) 337, 543, 885, 939
GsuI CTGGAG 2 cut(s) 468, 554
HaeII RGCGCY 1 cut(s) 772
HaeIII GGCC 2 cut(s) 316, 1012
HapII CCGG 2 cut(s) 67, 802
HhaI GCGC 1 cut(s) 771
Hin1I GRCGYC 1 cut(s) 769
Hin6I GCGC 1 cut(s) 769
HinP1I GCGC 1 cut(s) 769
HinfI GANTC 7 cut(s) 251, 298, 366, 443, 515, 790, 1129
HpaII CCGG 2 cut(s) 67, 802
HphI GGTGA 3 cut(s) 248, 732, 1124
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 795, 913, 956
Hpy188III TCNNGA 6 cut(s) 14, 62, 158, 220, 447, 490
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 4 cut(s) 124, 782, 802, 835
HpyCH4III ACNGT 4 cut(s) 21, 209, 969, 1023
HpyCH4IV ACGT 3 cut(s) 879, 945, 1038
HpyCH4V TGCA 6 cut(s) 98, 467, 521, 737, 887, 930
HpyF3I CTNAG 4 cut(s) 82, 318, 642, 894
HpySE526I ACGT 3 cut(s) 879, 945, 1038
Hsp92I GRCGYC 1 cut(s) 769
HspAI GCGC 1 cut(s) 769
KasI GGCGCC 1 cut(s) 768
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
LmnI GCTCC 6 cut(s) 75, 115, 150, 348, 378, 449
Lsp1109I GCAGC 3 cut(s) 529, 871, 950
LweI GCATC 3 cut(s) 253, 746, 786
MaeI CTAG 3 cut(s) 557, 710, 720
MaeII ACGT 3 cut(s) 879, 945, 1038
MaeIII GTNAC 4 cut(s) 248, 899, 1017, 1077
MalI GATC 6 cut(s) 53, 162, 488, 915, 960, 1113
MboI GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
MboII GAAGA 7 cut(s) 136, 139, 203, 293, 448, 484, 986
MflI RGATCY 2 cut(s) 51, 913
MhlI GDGCHC 2 cut(s) 80, 1163
MluCI AATT 2 cut(s) 428, 987
Mly113I GGCGCC 1 cut(s) 769
MlyI GAGTC 3 cut(s) 245, 375, 452
MmeI TCCRAC 3 cut(s) 79, 946, 1005
MseI TTAA 3 cut(s) 591, 671, 990
MslI CAYNNNNRTG 4 cut(s) 239, 261, 684, 690
MspA1I CMGCKG 1 cut(s) 1144
MspI CCGG 2 cut(s) 67, 802
MspR9I CCNGG 1 cut(s) 802
Mva1269I GAATGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 769
NciI CCSGG 1 cut(s) 802
NcoI CCATGG 1 cut(s) 376
NdeII GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
NlaIV GGNNCC 5 cut(s) 53, 77, 117, 451, 770
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 248, 1017
NspI RCATGY 1 cut(s) 695
PaeI GCATGC 1 cut(s) 695
PagI TCATGA 4 cut(s) 61, 157, 219, 489
PceI AGGCCT 1 cut(s) 316
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 4 cut(s) 298, 515, 790, 1129
PkrI GCNGC 4 cut(s) 338, 544, 886, 940
PleI GAGTC 3 cut(s) 245, 374, 451
PluTI GGCGCC 1 cut(s) 772
PpsI GAGTC 3 cut(s) 245, 374, 451
Ppu21I YACGTR 1 cut(s) 880
PshBI ATTAAT 1 cut(s) 591
PsiI TTATAA 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 1163
PspN4I GGNNCC 5 cut(s) 53, 77, 117, 451, 770
PspPI GGNCC 2 cut(s) 353, 380
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 2 cut(s) 51, 913
PvuII CAGCTG 1 cut(s) 1144
RsaI GTAC 2 cut(s) 702, 1050
RsaNI GTAC 2 cut(s) 701, 1049
RseI CAYNNNNRTG 4 cut(s) 239, 261, 684, 690
SacI GAGCTC 1 cut(s) 1163
SaqAI TTAA 3 cut(s) 591, 671, 990
SatI GCNGC 4 cut(s) 337, 543, 885, 939
Sau3AI GATC 6 cut(s) 51, 160, 486, 913, 958, 1111
Sau96I GGNCC 2 cut(s) 353, 380
ScaI AGTACT 1 cut(s) 702
SchI GAGTC 3 cut(s) 245, 375, 452
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 2 cut(s) 80, 1163
SfaNI GCATC 3 cut(s) 253, 746, 786
SfcI CTRYAG 2 cut(s) 420, 519
SfoI GGCGCC 1 cut(s) 770
SinI GGWCC 2 cut(s) 353, 380
SmiMI CAYNNNNRTG 4 cut(s) 239, 261, 684, 690
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
SpeI ACTAGT 1 cut(s) 719
SphI GCATGC 1 cut(s) 695
Sse9I AATT 2 cut(s) 428, 987
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 4 cut(s) 73, 336, 386, 1004
SspDI GGCGCC 1 cut(s) 768
SspI AATATT 1 cut(s) 865
SspMI CTAG 3 cut(s) 557, 710, 720
SstI GAGCTC 1 cut(s) 1163
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 800
StyI CCWWGG 3 cut(s) 148, 376, 1007
TaaI ACNGT 4 cut(s) 21, 209, 969, 1023
TaiI ACGT 3 cut(s) 882, 948, 1041
TasI AATT 2 cut(s) 428, 987
TatI WGTACW 2 cut(s) 700, 1048
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 4 cut(s) 298, 515, 790, 1129
Tru1I TTAA 3 cut(s) 591, 671, 990
Tru9I TTAA 3 cut(s) 591, 671, 990
TseFI GTSAC 2 cut(s) 248, 1017
TseI GCWGC 3 cut(s) 542, 884, 938
Tsp45I GTSAC 2 cut(s) 248, 1017
TspDTI ATGAA 6 cut(s) 107, 236, 448, 637, 650, 987
TspGWI ACGGA 3 cut(s) 136, 325, 1165
VpaK11BI GGWCC 2 cut(s) 353, 380
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 695
XspI CTAG 3 cut(s) 557, 710, 720
ZrmI AGTACT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.