Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Forward (+)

23944650 .. 23953139

Gene Structure 8490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33770.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3429 bp

ATGTCTTCCTTGAGTAGGGAACTGGTGTTCTTGATTTTACAGTTCTTGGATGAGGAGAAGTTCAAGGAGACGGTTCATAAGCTAGAGCAAGAGTCTGGTTTTTTCTTCAATATGAAGCATTTTGAGGATCAAGTCCAGGCTGGAGAGTGGGATGAAGTCGAGCGATATTTGGGTGGCTTCACTAAAGTCGAAGACAATCGGTATTCAATGAAGATCTTCTTTGAAATCAGGAAGCAGAAGTATTTGGAAGCTCTTGACAGGCAGGATAGGGCGAAGGCTGTTGAAATTCTTGTGAAGGACCTTAAGGTGTTTGCATCTTTTAATGAGGAACTTTTCAAGGAGATCACTCAGTTGCTCACTCTTGACAACTTCAGGCAAAATGAGCAGCTTTCCAAGTACGGTGACACAAAATCGGCTCGGAATATAATGCTTATAGAACTTAAAAAGCTCATTGAAGCTAACCCATTATTTCGTGATAAACTTGCGTTTCCGTCCTTCAAAAGTTCACGTTTGAGGACTCTGATAAACCAGAGTCTCAATTGGCAGCACCAACTTTGCAAGAATCCCCGTCCAAATCCTGATATTAAAACACTATTTATGGATCATTCTTGCACTCCAAATGCTAATGGATCTCGTCCCCCTCCCACAAACAATCCCCTAGTTGGACCAATTCCAAAGGCTGGTGCTTTTCCTCCTATCGGTGCCCATGGTCCGTTTGTCTCTGTGCAGCCATTTCAGCCTGTTGTCTCCCCCTCTCCTGGTGCTATTGCTGGGTGGATGTCAAACCCTAATCCTTCTATGCCTCATCCTGCTGTTGCAGCAGCTCCTCCTGGTCTTGTGCAGCCTTCTAGTGCAGCTGCTTTCTTGAAGCATCCAAGGACGCCAACAGGTGTTACAGGGATGGATTATCAGTCAGCTGATTCAGAGCACTTGATGAAGCGTATTCGTACTGGCCCAGCTGAAGAGGTATCCTTTTCTGGTGTGATGCATGGTTCCAATGCATATTCACAAGATGACCTTCCCAAGGCTGTTGTTCGGACCCTTAGTCAAGGATCTAATGTAATGAGCATGGACTTCCATCCACAGCAACAAAATATTCTTCTAGTTGGGACAAATGTTGGTGACATCAGTCTTTGGGAATTAGGGTCCCGGGAAAGGTTGGTACATAAACCTTTCAAGGTCTGGGATATACAAGCCGCGTCAATGCCACTACAGACCGCTTTGGTGAATGATGCTACAATATCAGTGAATCGTTGTGTTTGGGGGCCAGATGGACTTATGCTTGGTGTTGCATTTTCTAAGCACATCGTTCAGATATATACTTACAATCCAACTGGAGAATTGAGACAACATTTGGAGATTGATGCTCACGTTGGCGGTGTTAATGACATTGCATTTGCTCATCCGAACAAACAAATGTGTATTGTTACTTGCGGAGATGATAAAGTGATTAAGGTGTGGGATGCTGTAGCCGGACGCAGACAATATACATTTGAAGGCCATGAAGCTCCTGTATATTCAGTGTGCCCTCATTCCAAAGAAAACATACAATTCATTTTTTCGACTGCGATTGACGGGAAGATTAAAGCTTGGCTATACGACTGTTTGGGGTCAAGGGTTGACTATGATGCTCCTGGACTTTGGTGCACCATGATGGCTTATAGTGCAGACGGAACCAGACTCTTCTCATGTGGAACGGGTAAAGACGGTGAATCTCATTTGGTGGAGTGGAATGAGAGCGAAGGGGCCATCAAAAGGACATATTCTGGGTTTAGGAAACGCTCCTCAGAGGTTGTCCAGTTTGACACAACAAGGAACCGGTTCTTAGCCGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGGACAATACCAATGTGCTGGCAGCTGTTGATGCAGATGGAGGGTTACCTGCTAGCCCAAGACTCAGATTCAACAAAGAAGGGTCCTTGTTGGCTGTAACAACGACTGACAGTGGTATAAAGATTTTAGCAAATAATGATGGTGTGCGCTTGATAAGGATGTTGGAGAGCAGAGCTATGGAGAAAAACCGAGGCACTTCTGATCCCATCAACACTAAGCCTTTGATTGTCAATGCACTAGGCCCCATTGGGAATGTTTCTAACGCAGTTGCTCCAACTCTGGAACGTGCGGATAGAATCCAACCTGCTGCTTCTATCAGTAGTCTGGGTAATATGGAGAACAGCAGGCTTGTTGATGTTAAACCACGGATCCCTGATGATTTAGACAAGATTAAGAGCTGGAAAATTTCGGATATTGCGGATCCTTCTCAAATGAAAGCTTTAAGGTTGCCTGACTCCACAACAGCTGGAAAGGTTGTGAGACTAATGTACACCAACAATGGTTTGGCTCTGTTAGCCCTCGCATCCAATGCTGTTCACAAGCTTTGGAAATGGCCACGTAATGACAGGAATAATCCATCAGGGAAGGCTAGTGCATATGTTGTTCCACAGTTGTGGCAGCCTCCGAATGGAATTCTTATGGCTAATGATGTAAATGACAATAAACCAGCTGAGGAATCTACTGCATGCATTGCTTTATCGAAAAATGATTCCTACGTAATGTCTGCATCTGGCGGGAAGGTCTCTTTGTTCAACATGATGACATTTAAGGTCATGACAACATTTGTATCTCCCCCTCCTGCTGCCACTTTTCTGGCATTCCATCCTCAAGATAATAATATAATCGCTATTGGCATGGAGGACTCTACTATTTTAATATATAATGTTAGGGTTGATGAGGTCAAAACCAAACTGAAGGGTCACCAGAATCGGATAACGGGCCTTGCGTTTTCCCAAACTCTTAACATACTGGTTTCTTCAGGAGCTGATGCCCAGTTATGTGTGTGGAGCATTGATGGGTGGGAGAAAAAGAAAACAAGGTTTATACAAGCACCAACTGGTAGGCAATCCCCATTGGTTGGAGAAACAAAAGTTCAGTTCCATAATGATCACACACATCTGTTGGTTGCCCATGAAAGTCAAATTGCTGTGTATGACAGCAAGCTTGATTGTTTACGCTCTTGGTCTCCGAAAGATGCACTGGCTGCTCCCATCTCATGTGCAATATATTCGTGTGATGGTTTGTTGGTTTATGCTACTTTTTGTGACGGTGCTGTGGGAGTTTTTGATGCTGATAGCTTAAGACTAAGATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGCAGCAGCAACCCGTCCTATCCTCTGGTTGTAGCAGCTCATCCGTCTGAGCCTAACCAGATTGCAGTAGGCATGACTGATGGGTCAGTGCATGTGGTCGAACCATCTGATGCAGAGCTAAAGTGGGGTGGCACACCCTCTCAAGATAATGGGCCTTCCAACTCATCAAATCCTTCTGCTAGTGGTCAAGCATCTGAACTTCCTTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1143

Amino Acids

125.71

Weight (kDa)

6.73

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 34	6.8e-13	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	37 - 161	1.9e-61	TPR1-like, CTLH-containing domain
zf_topless	PF21359	164 - 204	1.5e-25	TOPLESS, zinc finger domain
Beta-prop_THOC3	PF25174	339 - 502	5.7e-11	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	341 - 614	1.6e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	346 - 561	3.7e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	387 - 558	3.6e-13	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	409 - 621	4.2e-18	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	410 - 616	4.3e-06	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	423 - 526	6.2e-10	WDHD1 first WD40 domain
WD40_Prp19	PF24814	452 - 525	3.1e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	544 - 659	8.3e-07	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	835 - 958	2.2e-13	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	838 - 957	1.1e-16	WDR3 first beta-propeller domain
WDR55	PF24796	838 - 954	1.4e-06	WDR55
WD40_WDHD1_1st	PF24817	838 - 1049	1.8e-19	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	839 - 959	8.2e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	840 - 1096	1.2e-16	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	844 - 954	5e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	845 - 961	2.4e-12	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	856 - 955	6.2e-11	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	856 - 956	2.1e-11	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	861 - 964	9.6e-09	WDR90/POC16, second beta-propeller
Beta-prop_RIG_1st	PF23770	870 - 936	2.5e-07	RIG first beta-propeller
WD40_Prp19	PF24814	881 - 1078	3.3e-15	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	917 - 1097	6.4e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	3174, 3298
Acc36I	ACCTGC	2 cut(s)	1921, 2176
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	2 cut(s)	680, 2942
AccII	CGCG	1 cut(s)	1199
AciI	CCGC	8 cut(s)	1197, 1218, 1377, 1434, 1830, 2153, 2282, 2598
AclWI	GGATC	9 cut(s)	135, 609, 637, 1060, 2060, 2227, 2240, 2279, 2292
AcoI	YGGCCR	1 cut(s)	2417
AcsI	RAATTY	4 cut(s)	285, 1841, 2268, 2496
AcuI	CTGAAG	4 cut(s)	355, 981, 2798, 2826
AcyI	GRCGYC	1 cut(s)	881
AfaI	GTAC	4 cut(s)	398, 949, 1164, 2354
AflII	CTTAAG	2 cut(s)	302, 3163
AgeI	ACCGGT	1 cut(s)	1818
AhdI	GACNNNNNGTC	1 cut(s)	1044
AjnI	CCWGG	5 cut(s)	135, 757, 829, 1633, 3422
AleI	CACNNNNGTG	1 cut(s)	2476
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
Alw21I	GWGCWC	2 cut(s)	930, 1649
Alw26I	GTCTC	8 cut(s)	62, 539, 724, 751, 1339, 2338, 2611, 3054
Alw44I	GTGCAC	1 cut(s)	1645
AlwI	GGATC	9 cut(s)	135, 609, 637, 1060, 2060, 2227, 2240, 2279, 2292
AlwNI	CAGNNNCTG	1 cut(s)	2849
Ama87I	CYCGRG	1 cut(s)	1149
AoxI	GGCC	8 cut(s)	952, 1265, 1498, 1746, 2104, 2417, 2803, 3368
ApaLI	GTGCAC	1 cut(s)	1645
ApoI	RAATTY	4 cut(s)	285, 1841, 2268, 2496
ArsI	GACNNNNNNTTYG	2 cut(s)	1379, 1411
AsiGI	ACCGGT	1 cut(s)	1818
Asp700I	GAANNNNTTC	2 cut(s)	215, 1820
AspLEI	GCGC	2 cut(s)	2013, 3187
AsuC2I	CCSGG	2 cut(s)	1150, 1151
AsuHPI	GGTGA	6 cut(s)	413, 1133, 1237, 1721, 1847, 2777
AsuNHI	GCTAGC	1 cut(s)	1916
AvaI	CYCGRG	1 cut(s)	1149
AvaII	GGWCC	6 cut(s)	298, 665, 710, 1038, 1146, 1947
BaeGI	GKGCMC	3 cut(s)	706, 1529, 1649
BaeI	ACNNNNGTAYC	2 cut(s)	2634, 2667
BalI	TGGCCA	1 cut(s)	2419
BamHI	GGATCC	2 cut(s)	2232, 2284
BanI	GGYRCC	1 cut(s)	701
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	930, 1649
BbvCI	CCTCAGC	1 cut(s)	2535
BcgI	CGANNNNNNTGC	2 cut(s)	3075, 3109
BciT130I	CCWGG	5 cut(s)	137, 759, 831, 1635, 3424
BciVI	GTATCC	1 cut(s)	979
BclI	TGATCA	1 cut(s)	2971
BcnI	CCSGG	2 cut(s)	1150, 1151
BcoDI	GTCTC	8 cut(s)	62, 539, 724, 751, 1339, 2338, 2611, 3054
BfaI	CTAG	8 cut(s)	83, 659, 849, 1103, 1917, 2102, 2454, 3396
BfmI	CTRYAG	2 cut(s)	1211, 1467
BfoI	RGCGCY	1 cut(s)	3188
BfrI	CTTAAG	2 cut(s)	302, 3163
BfuAI	ACCTGC	2 cut(s)	1921, 2176
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	213
Bme1390I	CCNGG	7 cut(s)	137, 759, 831, 1150, 1151, 1635, 3424
Bme18I	GGWCC	6 cut(s)	298, 665, 710, 1038, 1146, 1947
BmeRI	GACNNNNNGTC	1 cut(s)	1044
BmeT110I	CYCGRG	1 cut(s)	1149
BmrFI	CCNGG	7 cut(s)	137, 759, 831, 1150, 1151, 1635, 3424
BmrI	ACTGGG	1 cut(s)	2851
BmtI	GCTAGC	1 cut(s)	1920
BmuI	ACTGGG	1 cut(s)	2851
BoxI	GACNNNNGTC	1 cut(s)	1128
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	2 cut(s)	162, 1356
Bpu10I	CCTNAGC	1 cut(s)	2535
BpuEI	CTTGAG	3 cut(s)	31, 2676, 3342
BpuMI	CCSGG	2 cut(s)	1150, 1151
BsaAI	YACGTR	2 cut(s)	2423, 2581
BsaHI	GRCGYC	1 cut(s)	881
BsaI	GGTCTC	2 cut(s)	2611, 3054
BsaJI	CCNNGG	6 cut(s)	706, 875, 1023, 1149, 2053, 2228
BsaWI	WCCGGW	1 cut(s)	1818
Bse118I	RCCGGY	1 cut(s)	1818
Bse1I	ACTGG	8 cut(s)	27, 955, 1339, 1798, 2838, 2857, 2926, 3069
Bse3DI	GCAATG	2 cut(s)	1389, 2553
BseBI	CCWGG	5 cut(s)	137, 759, 831, 1635, 3424
BseDI	CCNNGG	6 cut(s)	706, 875, 1023, 1149, 2053, 2228
BseMI	GCAATG	2 cut(s)	1389, 2553
BseMII	CTCAG	6 cut(s)	362, 1800, 1942, 2526, 3229, 3255
BseNI	ACTGG	8 cut(s)	27, 955, 1339, 1798, 2838, 2857, 2926, 3069
BseRI	GAGGAG	3 cut(s)	68, 816, 1774
BseSI	GKGCMC	3 cut(s)	706, 1529, 1649
BseYI	CCCAGC	2 cut(s)	770, 955
BsgI	GTGCAG	4 cut(s)	746, 860, 873, 1686
Bsh1236I	CGCG	1 cut(s)	1199
BshFI	GGCC	8 cut(s)	954, 1267, 1500, 1748, 2106, 2419, 2805, 3370
BshNI	GGYRCC	1 cut(s)	701
BshTI	ACCGGT	1 cut(s)	1818
BsiHKAI	GWGCWC	2 cut(s)	930, 1649
BsiHKCI	CYCGRG	1 cut(s)	1149
BsiSI	CCGG	3 cut(s)	1150, 1473, 1819
BslFI	GGGAC	4 cut(s)	621, 1123, 1132, 1874
BsmAI	GTCTC	8 cut(s)	62, 539, 724, 751, 1339, 2338, 2611, 3054
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	4 cut(s)	621, 1123, 1132, 1874
BsmI	GAATGC	1 cut(s)	2681
BsnI	GGCC	8 cut(s)	954, 1267, 1500, 1748, 2106, 2419, 2805, 3370
Bso31I	GGTCTC	2 cut(s)	2611, 3054
BsoBI	CYCGRG	1 cut(s)	1149
Bsp1286I	GDGCHC	4 cut(s)	706, 930, 1529, 1649
Bsp1407I	TGTACA	1 cut(s)	2352
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	8 cut(s)	1197, 1218, 1377, 1434, 1830, 2153, 2282, 2598
BspANI	GGCC	8 cut(s)	954, 1267, 1500, 1748, 2106, 2419, 2805, 3370
BspCNI	CTCAG	6 cut(s)	361, 1799, 1941, 2527, 3228, 3256
BspFNI	CGCG	1 cut(s)	1199
BspHI	TCATGA	1 cut(s)	2637
BspMI	ACCTGC	2 cut(s)	1921, 2176
BspOI	GCTAGC	1 cut(s)	1920
BspPI	GGATC	9 cut(s)	135, 609, 637, 1060, 2060, 2227, 2240, 2279, 2292
BspT107I	GGYRCC	1 cut(s)	701
BspTI	CTTAAG	2 cut(s)	302, 3163
BspTNI	GGTCTC	2 cut(s)	2611, 3054
BsrDI	GCAATG	2 cut(s)	1389, 2553
BsrFI	RCCGGY	1 cut(s)	1818
BsrGI	TGTACA	1 cut(s)	2352
BsrI	ACTGG	8 cut(s)	27, 955, 1339, 1798, 2838, 2857, 2926, 3069
BssAI	RCCGGY	1 cut(s)	1818
BssECI	CCNNGG	6 cut(s)	706, 875, 1023, 1149, 2053, 2228
BssNI	GRCGYC	1 cut(s)	881
BssT1I	CCWWGG	3 cut(s)	706, 875, 1023
Bst2UI	CCWGG	5 cut(s)	137, 759, 831, 1635, 3424
Bst4CI	ACNGT	8 cut(s)	42, 73, 401, 1604, 1709, 1976, 2475, 3134
Bst6I	CTCTTC	2 cut(s)	957, 1688
BstACI	GRCGYC	1 cut(s)	881
BstAFI	CTTAAG	2 cut(s)	302, 3163
BstAPI	GCANNNNNTGC	3 cut(s)	2393, 2555, 3068
BstAUI	TGTACA	1 cut(s)	2352
BstBAI	YACGTR	2 cut(s)	2423, 2581
BstC8I	GCNNGC	5 cut(s)	1884, 1918, 2210, 2551, 3026
BstDSI	CCRYGG	2 cut(s)	706, 2228
BstEII	GGTNACC	2 cut(s)	1908, 2783
BstENI	CCTNNNNNAGG	2 cut(s)	13, 1022
BstFNI	CGCG	1 cut(s)	1199
BstH2I	RGCGCY	1 cut(s)	3188
BstHHI	GCGC	2 cut(s)	2013, 3187
BstMAI	GTCTC	8 cut(s)	62, 539, 724, 751, 1339, 2338, 2611, 3054
BstNI	CCWGG	5 cut(s)	137, 759, 831, 1635, 3424
BstNSI	RCATGY	2 cut(s)	2553, 3311
BstPAI	GACNNNNGTC	1 cut(s)	1128
BstPI	GGTNACC	2 cut(s)	1908, 2783
BstSCI	CCNGG	7 cut(s)	135, 757, 829, 1148, 1149, 1633, 3422
BstSFI	CTRYAG	2 cut(s)	1211, 1467
BstSLI	GKGCMC	3 cut(s)	706, 1529, 1649
BstSNI	TACGTA	1 cut(s)	2581
BstUI	CGCG	1 cut(s)	1199
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	5 cut(s)	213, 629, 1052, 2232, 2284
BstXI	CCANNNNNNTGG	3 cut(s)	1882, 2478, 2677
BstYI	RGATCY	5 cut(s)	213, 629, 1052, 2232, 2284
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	8 cut(s)	954, 1267, 1500, 1748, 2106, 2419, 2805, 3370
BtgI	CCRYGG	2 cut(s)	706, 2228
BtsIMutI	CAGTG	5 cut(s)	1251, 1527, 1981, 3062, 3309
BveI	ACCTGC	2 cut(s)	1921, 2176
Cac8I	GCNNGC	5 cut(s)	1884, 1918, 2210, 2551, 3026
CaiI	CAGNNNCTG	1 cut(s)	2849
CciI	TCATGA	1 cut(s)	2637
CfoI	GCGC	2 cut(s)	2013, 3187
Cfr10I	RCCGGY	1 cut(s)	1818
Cfr9I	CCCGGG	1 cut(s)	1149
CseI	GACGC	3 cut(s)	889, 1188, 1485
Csp6I	GTAC	4 cut(s)	397, 948, 1163, 2353
CspAI	ACCGGT	1 cut(s)	1818
CviQI	GTAC	4 cut(s)	397, 948, 1163, 2353
DrdI	GACNNNNNNGTC	2 cut(s)	3174, 3298
DriI	GACNNNNNGTC	1 cut(s)	1044
DseDI	GACNNNNNNGTC	2 cut(s)	3174, 3298
EaeI	YGGCCR	1 cut(s)	2417
Eam1104I	CTCTTC	2 cut(s)	957, 1688
Eam1105I	GACNNNNNGTC	1 cut(s)	1044
EarI	CTCTTC	2 cut(s)	957, 1688
Eco105I	TACGTA	1 cut(s)	2581
Eco130I	CCWWGG	3 cut(s)	706, 875, 1023
Eco31I	GGTCTC	2 cut(s)	2611, 3054
Eco47I	GGWCC	6 cut(s)	298, 665, 710, 1038, 1146, 1947
Eco57I	CTGAAG	4 cut(s)	355, 981, 2798, 2826
Eco88I	CYCGRG	1 cut(s)	1149
Eco91I	GGTNACC	2 cut(s)	1908, 2783
EcoNI	CCTNNNNNAGG	2 cut(s)	13, 1022
EcoO109I	RGGNCCY	4 cut(s)	298, 1146, 1947, 2105
EcoO65I	GGTNACC	2 cut(s)	1908, 2783
EcoRI	GAATTC	1 cut(s)	2496
EcoRII	CCWGG	5 cut(s)	135, 757, 829, 1633, 3422
EcoT14I	CCWWGG	3 cut(s)	706, 875, 1023
EcoT22I	ATGCAT	3 cut(s)	990, 1003, 2555
ErhI	CCWWGG	3 cut(s)	706, 875, 1023
Esp3I	CGTCTC	1 cut(s)	62
FalI	AAGNNNNNCTT	4 cut(s)	203, 235, 1002, 1034
FaqI	GGGAC	4 cut(s)	621, 1123, 1132, 1874
FauI	CCCGC	1 cut(s)	2591
FauNDI	CATATG	1 cut(s)	2461
FbaI	TGATCA	1 cut(s)	2971
FspBI	CTAG	8 cut(s)	83, 659, 849, 1103, 1917, 2102, 2454, 3396
GlaI	GCGC	2 cut(s)	2012, 3186
GsaI	CCCAGC	2 cut(s)	774, 959
GsuI	CTGGAG	2 cut(s)	162, 1356
HaeII	RGCGCY	1 cut(s)	3188
HaeIII	GGCC	8 cut(s)	954, 1267, 1500, 1748, 2106, 2419, 2805, 3370
HapII	CCGG	3 cut(s)	1150, 1473, 1819
HgaI	GACGC	3 cut(s)	889, 1188, 1485
HhaI	GCGC	2 cut(s)	2013, 3187
Hin1I	GRCGYC	1 cut(s)	881
Hin6I	GCGC	2 cut(s)	2011, 3185
HinP1I	GCGC	2 cut(s)	2011, 3185
HincII	GTYRAC	1 cut(s)	1621
HindII	GTYRAC	1 cut(s)	1621
HindIII	AAGCTT	4 cut(s)	1587, 2301, 2405, 3026
HpaII	CCGG	3 cut(s)	1150, 1473, 1819
HphI	GGTGA	6 cut(s)	413, 1133, 1237, 1721, 1847, 2777
Hpy166II	GTNNAC	6 cut(s)	506, 1621, 1647, 2355, 2401, 3038
Hpy8I	GTNNAC	6 cut(s)	506, 1621, 1647, 2355, 2401, 3038
HpyCH4III	ACNGT	8 cut(s)	42, 73, 401, 1604, 1709, 1976, 2475, 3134
HpyCH4IV	ACGT	5 cut(s)	508, 1371, 2149, 2422, 2580
HpySE526I	ACGT	5 cut(s)	508, 1371, 2149, 2422, 2580
Hsp92I	GRCGYC	1 cut(s)	881
HspAI	GCGC	2 cut(s)	2011, 3185
KflI	GGGWCCC	1 cut(s)	1146
Ksp22I	TGATCA	1 cut(s)	2971
LmnI	GCTCC	8 cut(s)	829, 1513, 1636, 1787, 2140, 2846, 2871, 3076
MaeI	CTAG	8 cut(s)	83, 659, 849, 1103, 1917, 2102, 2454, 3396
MaeII	ACGT	5 cut(s)	508, 1371, 2149, 2422, 2580
MaeIII	GTNAC	8 cut(s)	401, 892, 1121, 1426, 1908, 1960, 2783, 3128
MboII	GAAGA	9 cut(s)	97, 203, 208, 223, 974, 1091, 1591, 1675, 2832
MfeI	CAATTG	1 cut(s)	538
MflI	RGATCY	5 cut(s)	213, 629, 1052, 2232, 2284
MhlI	GDGCHC	4 cut(s)	706, 930, 1529, 1649
MlsI	TGGCCA	1 cut(s)	2419
MluNI	TGGCCA	1 cut(s)	2419
MlyI	GAGTC	7 cut(s)	101, 511, 541, 1674, 1920, 2312, 2720
MmeI	TCCRAC	7 cut(s)	643, 1355, 2007, 2162, 2188, 2923, 3399
Mox20I	TGGCCA	1 cut(s)	2419
Mph1103I	ATGCAT	3 cut(s)	990, 1003, 2555
MroXI	GAANNNNTTC	2 cut(s)	215, 1820
MscI	TGGCCA	1 cut(s)	2419
MslI	CAYNNNNRTG	2 cut(s)	1652, 2476
Msp20I	TGGCCA	1 cut(s)	2419
MspA1I	CMGCKG	7 cut(s)	857, 917, 959, 1832, 1889, 2330, 2534
MspCI	CTTAAG	2 cut(s)	302, 3163
MspI	CCGG	3 cut(s)	1150, 1473, 1819
MspR9I	CCNGG	7 cut(s)	137, 759, 831, 1150, 1151, 1635, 3424
MunI	CAATTG	1 cut(s)	538
Mva1269I	GAATGC	1 cut(s)	2681
MvaI	CCWGG	5 cut(s)	137, 759, 831, 1635, 3424
MvnI	CGCG	1 cut(s)	1199
NciI	CCSGG	2 cut(s)	1150, 1151
NcoI	CCATGG	1 cut(s)	706
NdeI	CATATG	1 cut(s)	2461
NheI	GCTAGC	1 cut(s)	1916
NmuCI	GTSAC	4 cut(s)	401, 1121, 2783, 3128
NsiI	ATGCAT	3 cut(s)	990, 1003, 2555
NspI	RCATGY	2 cut(s)	2553, 3311
OliI	CACNNNNGTG	1 cut(s)	2476
PaeI	GCATGC	1 cut(s)	2553
PagI	TCATGA	1 cut(s)	2637
PcsI	WCGNNNNNNNCGW	1 cut(s)	2807
PctI	GAATGC	1 cut(s)	2681
PdmI	GAANNNNTTC	2 cut(s)	215, 1820
PfeI	GAWTC	9 cut(s)	562, 920, 1249, 1712, 1932, 2160, 2540, 2573, 2791
PflMI	CCANNNNNTGG	2 cut(s)	680, 2942
PfoI	TCCNGGA	1 cut(s)	1633
PinAI	ACCGGT	1 cut(s)	1818
PleI	GAGTC	7 cut(s)	100, 511, 540, 1674, 1920, 2312, 2720
PpsI	GAGTC	7 cut(s)	100, 511, 540, 1674, 1920, 2312, 2720
Ppu21I	YACGTR	2 cut(s)	2423, 2581
PpuMI	RGGWCCY	3 cut(s)	298, 1146, 1947
PshAI	GACNNNNGTC	1 cut(s)	1128
Psp5II	RGGWCCY	3 cut(s)	298, 1146, 1947
Psp6I	CCWGG	5 cut(s)	135, 757, 829, 1633, 3422
PspEI	GGTNACC	2 cut(s)	1908, 2783
PspFI	CCCAGC	2 cut(s)	770, 955
PspGI	CCWGG	5 cut(s)	135, 757, 829, 1633, 3422
PspPPI	RGGWCCY	3 cut(s)	298, 1146, 1947
PstNI	CAGNNNCTG	1 cut(s)	2849
PsuI	RGATCY	5 cut(s)	213, 629, 1052, 2232, 2284
PvuII	CAGCTG	6 cut(s)	857, 917, 959, 1889, 2330, 2534
RsaI	GTAC	4 cut(s)	398, 949, 1164, 2354
RsaNI	GTAC	4 cut(s)	397, 948, 1163, 2353
RseI	CAYNNNNRTG	2 cut(s)	1652, 2476
SchI	GAGTC	7 cut(s)	101, 511, 541, 1674, 1920, 2312, 2720
ScrFI	CCNGG	7 cut(s)	137, 759, 831, 1150, 1151, 1635, 3424
SduI	GDGCHC	4 cut(s)	706, 930, 1529, 1649
SfcI	CTRYAG	2 cut(s)	1211, 1467
SinI	GGWCC	6 cut(s)	298, 665, 710, 1038, 1146, 1947
SmaI	CCCGGG	1 cut(s)	1151
SmiMI	CAYNNNNRTG	2 cut(s)	1652, 2476
SmlI	CTYRAG	5 cut(s)	10, 302, 2691, 3163, 3357
SmoI	CTYRAG	5 cut(s)	10, 302, 2691, 3163, 3357
SnaBI	TACGTA	1 cut(s)	2581
SphI	GCATGC	1 cut(s)	2553
SsiI	CCGC	8 cut(s)	1197, 1218, 1377, 1434, 1830, 2153, 2282, 2598
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	8 cut(s)	83, 659, 849, 1103, 1917, 2102, 2454, 3396
StyD4I	CCNGG	7 cut(s)	135, 757, 829, 1148, 1149, 1633, 3422
StyI	CCWWGG	3 cut(s)	706, 875, 1023
TaaI	ACNGT	8 cut(s)	42, 73, 401, 1604, 1709, 1976, 2475, 3134
TaiI	ACGT	5 cut(s)	511, 1374, 2152, 2425, 2583
TaqI	TCGA	6 cut(s)	159, 189, 1562, 2564, 3178, 3315
TatI	WGTACW	1 cut(s)	2352
TauI	GCSGC	2 cut(s)	1199, 1832
TfiI	GAWTC	9 cut(s)	562, 920, 1249, 1712, 1932, 2160, 2540, 2573, 2791
TscAI	CASTG	5 cut(s)	1251, 1527, 1981, 3069, 3309
TseFI	GTSAC	4 cut(s)	401, 1121, 2783, 3128
Tsp45I	GTSAC	4 cut(s)	401, 1121, 2783, 3128
TspGWI	ACGGA	5 cut(s)	480, 702, 1686, 2245, 3249
TspMI	CCCGGG	1 cut(s)	1149
TspRI	CASTG	5 cut(s)	1251, 1527, 1981, 3069, 3309
Van91I	CCANNNNNTGG	2 cut(s)	680, 2942
Vha464I	CTTAAG	2 cut(s)	302, 3163
VneI	GTGCAC	1 cut(s)	1645
VpaK11BI	GGWCC	6 cut(s)	298, 665, 710, 1038, 1146, 1947
XagI	CCTNNNNNAGG	2 cut(s)	13, 1022
XapI	RAATTY	4 cut(s)	285, 1841, 2268, 2496
XceI	RCATGY	2 cut(s)	2553, 3311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2365
XmaI	CCCGGG	1 cut(s)	1149
XmnI	GAANNNNTTC	2 cut(s)	215, 1820
XspI	CTAG	8 cut(s)	83, 659, 849, 1103, 1917, 2102, 2454, 3396
Zsp2I	ATGCAT	3 cut(s)	990, 1003, 2555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.