Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Forward (+)

68145402 .. 68147537

Gene Structure 2136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G041180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTACACCAATGATGGCTTGGCTCTGTTAGCGCTGGCCTCCAATGCTGTTCACAAGATTTGGAAATGGCCGCGTGATGACAGGAATAATCCATCAGGAAAGGCTAGTGCATATGTTGTTCCACAGTTGTGGCAGCCTCGGAATGGAATTCTTATGGCTAATGATGTAAATGACAATAAGACTGCTGAGGAATATACTGCATGCATTGCTGTATATAAAAATGGTTCTTACATGATGTCTGCATCTGGCGGTAAGGTCTCTTTGTTCAACATGATGACATTTAAGGTCGAAACCAAACTGAAGGGTCACCGGAATCGGATAACGGGCCTTGCGTTTTCCCAAACTCTTAACATACTGGTTTCTTCAGGAGCTGATGCCCAGTGGACTCCCAAAGATGCACTTGCTGCTCCCATCTCATGGGCAATATATTCATGCGATGGTTTGTTGGTTTATGCTACTTTTTGTGACGGTGTTGTGGGAGTTTTTGATGCTAATAGCTTAAGACTCAGATGTCGAATGGTGCCTTCTGCTTATATAGTATATACCATCATTTTCTCTCAGGTGAGCACAAACGGTGGCAACCCCTCCTATCCCCTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGACGGGTCAGTGCATTTGGTTGAACCATCTGATGCAGAGCTAGCTCTGAAGTGGGGTGGCACACCCTCTCAAGGGATAATGGTCCTTCCAATTCATCAAATCCTTCTCCTAGTGGTCAAGCATCAGAACTTCCTTCCAGGTGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

265

Amino Acids

28.76

Weight (kDa)

7.69

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	43 - 127	2.3e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	67 - 174	3e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	510, 652
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	71, 249
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	3 cut(s)	320, 348, 716
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	4 cut(s)	143, 417, 719, 720
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	268, 671
AjnI	CCWGG	2 cut(s)	594, 784
AleI	CACNNNNGTG	1 cut(s)	127
AluBI	AGCT	5 cut(s)	371, 498, 608, 688, 692
AluI	AGCT	5 cut(s)	371, 498, 608, 688, 692
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	3 cut(s)	36, 68, 325
ApeKI	GCWGC	3 cut(s)	133, 404, 605
ApoI	RAATTY	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	325, 730
AsuHPI	GGTGA	2 cut(s)	299, 574
AsuNHI	GCTAGC	1 cut(s)	688
AvaII	GGWCC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	145, 391, 617
BccI	CCATC	7 cut(s)	8, 100, 419, 431, 554, 622, 682
BciT130I	CCWGG	2 cut(s)	596, 786
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	3 cut(s)	105, 689, 758
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	499
BisI	GCNGC	4 cut(s)	71, 134, 405, 606
BlsI	GCNGC	4 cut(s)	72, 135, 406, 607
Bme1390I	CCNGG	2 cut(s)	596, 786
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	2 cut(s)	325, 730
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	596, 786
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	6 cut(s)	251, 364, 385, 478, 670, 778
BmtI	GCTAGC	1 cut(s)	692
BmuI	ACTGGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	137, 594
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 417, 719, 720
Bse1I	ACTGG	2 cut(s)	360, 379
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	596, 786
BseDI	CCNNGG	2 cut(s)	137, 594
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	4 cut(s)	143, 417, 719, 720
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	177, 520, 572, 609
BseNI	ACTGG	2 cut(s)	360, 379
BseXI	GCAGC	3 cut(s)	145, 391, 617
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	38, 70, 327
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	4 cut(s)	143, 417, 719, 720
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	38, 70, 327
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	2 cut(s)	71, 249
BspANI	GGCC	3 cut(s)	38, 70, 327
BspCNI	CTCAG	4 cut(s)	178, 519, 571, 610
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	522
BspOI	GCTAGC	1 cut(s)	692
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	360, 379
BssECI	CCNNGG	2 cut(s)	137, 594
Bst2UI	CCWGG	2 cut(s)	596, 786
Bst4CI	ACNGT	3 cut(s)	126, 470, 575
BstAFI	CTTAAG	1 cut(s)	499
BstAPI	GCANNNNNTGC	2 cut(s)	206, 404
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	36, 202, 690
BstDEI	CTNAG	4 cut(s)	186, 506, 558, 618
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 404, 689
BstNI	CCWGG	2 cut(s)	596, 786
BstNSI	RCATGY	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	594, 784
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	3 cut(s)	145, 391, 617
BstXI	CCANNNNNNTGG	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	38, 70, 327
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	386, 663
Cac8I	GCNNGC	3 cut(s)	36, 202, 690
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	325, 730
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	6 cut(s)	201, 232, 271, 417, 432, 643
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	186, 506, 558, 618
DrdI	GACNNNNNNGTC	2 cut(s)	510, 652
DseDI	GACNNNNNNGTC	2 cut(s)	510, 652
EaeI	YGGCCR	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	730
Eco47III	AGCGCT	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	320, 348, 716
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	594, 784
EcoT22I	ATGCAT	1 cut(s)	206
FaeI	CATG	6 cut(s)	204, 235, 274, 420, 435, 646
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	6 cut(s)	200, 231, 270, 416, 431, 642
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	71, 134, 405, 606
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	4 cut(s)	71, 134, 405, 606
FspBI	CTAG	3 cut(s)	105, 689, 758
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	71, 134, 405, 606
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	38, 70, 327
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	6 cut(s)	204, 235, 274, 420, 435, 646
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	3 cut(s)	313, 385, 504
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	2 cut(s)	299, 574
Hpy166II	GTNNAC	3 cut(s)	6, 52, 384
Hpy188I	TCNGA	7 cut(s)	141, 318, 509, 619, 679, 696, 774
Hpy188III	TCNNGA	2 cut(s)	96, 366
Hpy8I	GTNNAC	3 cut(s)	6, 52, 384
HpyAV	CCTTC	5 cut(s)	295, 534, 743, 761, 791
HpyCH4III	ACNGT	3 cut(s)	126, 470, 575
HpyCH4V	TGCA	8 cut(s)	110, 200, 204, 242, 398, 635, 661, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 404, 689
HpyF3I	CTNAG	4 cut(s)	186, 506, 558, 618
Hsp92II	CATG	6 cut(s)	204, 235, 274, 420, 435, 646
HspAI	GCGC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	368, 412
Lsp1109I	GCAGC	3 cut(s)	145, 391, 617
LweI	GCATC	6 cut(s)	251, 364, 385, 478, 670, 778
MaeI	CTAG	3 cut(s)	105, 689, 758
MaeIII	GTNAC	2 cut(s)	305, 464
MboII	GAAGA	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	3 cut(s)	147, 738, 793
MlyI	GAGTC	2 cut(s)	379, 498
MnlI	CCTC	5 cut(s)	49, 147, 181, 595, 724
Mph1103I	ATGCAT	1 cut(s)	206
MseI	TTAA	4 cut(s)	282, 348, 500, 796
MslI	CAYNNNNRTG	1 cut(s)	127
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	596, 786
MvaI	CCWGG	2 cut(s)	596, 786
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 404, 689
NdeI	CATATG	1 cut(s)	112
NheI	GCTAGC	1 cut(s)	688
NlaIII	CATG	6 cut(s)	204, 235, 274, 420, 435, 646
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	2 cut(s)	305, 464
NsiI	ATGCAT	1 cut(s)	206
NspI	RCATGY	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	4 cut(s)	72, 135, 406, 607
PleI	GAGTC	2 cut(s)	379, 498
PpsI	GAGTC	2 cut(s)	379, 498
Psp6I	CCWGG	2 cut(s)	594, 784
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	594, 784
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	325, 730
PstNI	CAGNNNCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	4 cut(s)	282, 348, 500, 796
SatI	GCNGC	4 cut(s)	71, 134, 405, 606
Sau96I	GGNCC	2 cut(s)	325, 730
SchI	GAGTC	2 cut(s)	379, 498
ScrFI	CCNGG	2 cut(s)	596, 786
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	9 cut(s)	258, 288, 373, 500, 564, 610, 690, 694, 790
SfaNI	GCATC	6 cut(s)	251, 364, 385, 478, 670, 778
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	499, 717
SmoI	CTYRAG	2 cut(s)	499, 717
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	3 cut(s)	147, 738, 793
SsiI	CCGC	2 cut(s)	71, 249
SspMI	CTAG	3 cut(s)	105, 689, 758
StyD4I	CCNGG	2 cut(s)	594, 784
TaaI	ACNGT	3 cut(s)	126, 470, 575
TaqI	TCGA	2 cut(s)	288, 514
TasI	AATT	3 cut(s)	147, 738, 793
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	4 cut(s)	282, 348, 500, 796
Tru9I	TTAA	4 cut(s)	282, 348, 500, 796
TscAI	CASTG	2 cut(s)	386, 663
TseFI	GTSAC	2 cut(s)	305, 464
TseI	GCWGC	3 cut(s)	133, 404, 605
Tsp45I	GTSAC	2 cut(s)	305, 464
TspDTI	ATGAA	2 cut(s)	420, 731
TspRI	CASTG	2 cut(s)	386, 663
Van91I	CCANNNNNTGG	1 cut(s)	417
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	1 cut(s)	147
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 635
XspI	CTAG	3 cut(s)	105, 689, 758
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.