Rh1CG429700

Ribosomal_L40e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002550
Physical Location & Seq
Reverse (-)
68735682 .. 68736675
994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG429700.1

Sequence Viewer

Length: 465 bp
ATGAGCTTGATCAAGAAACCGGGACAGGATGGAGTTGCGGTGAATCGAGGAGATGGTAGTAATGGGGTAGTCTCTGCTGATCAGGAAGAATGTGTTGAGCCAGCTCCTTGTGGACCCTTACCAAAGGGATATATGTGGGCTCGGGAATATATCTGTGACGGCGATGTTGGACCTCCTCTCTATGCAGCTACGATGTTTTGTCTTATTTGCAGCAAGTATTTTGAGCACATGACTAAAGACTGCCCTCATTTGCATGATGAGAGTTACAATGATCGCCGTTGGAGGATTTTTCATGCCCCTCCTGTTTTTAAAACCACTAATGCATTGATAATGCAGATATTCGTCAAGACTCTCCCAGGAAAGACCCTAACCCTTGAGGTTGAAAGCTCTGACACCATTTACAATGTCAAAGCCAAAATCCGAGACAAGGAAGGCATCCCCAAGACCAGCAAAGGCCGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L40e ubiquitin

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

7.6

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 113 - 149 1.3e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 38, 457
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 6, 104, 188, 387
AluI AGCT 4 cut(s) 6, 104, 188, 387
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 76, 417
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 185, 210
AspS9I GGNCC 2 cut(s) 113, 170
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 113, 170
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 197, 222
BccI CCATC 2 cut(s) 23, 47
BceAI ACGGC 2 cut(s) 175, 261
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 2 cut(s) 9, 79
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 76, 417
BisI GCNGC 3 cut(s) 186, 211, 457
BlsI GCNGC 3 cut(s) 187, 212, 458
Bme1390I CCNGG 2 cut(s) 21, 357
Bme18I GGWCC 2 cut(s) 113, 170
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 113, 170
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 21, 357
BmsI GCATC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 34, 435
BseLI CCNNNNNNNGG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 63, 165
BseXI GCAGC 2 cut(s) 197, 222
BshFI GGCC 1 cut(s) 456
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 76, 417
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 142, 228
Bsp143I GATC 3 cut(s) 9, 79, 271
BspACI CCGC 2 cut(s) 38, 457
BspANI GGCC 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 9, 79, 271
Bst2UI CCWGG 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 102
BstF5I GGATG 2 cut(s) 34, 435
BstKTI GATC 3 cut(s) 12, 82, 274
BstMAI GTCTC 2 cut(s) 76, 417
BstMBI GATC 3 cut(s) 9, 79, 271
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 19, 355
BstV1I GCAGC 2 cut(s) 197, 222
BsuRI GGCC 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 34, 435
Cac8I GCNNGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 113, 170
CviAII CATG 3 cut(s) 229, 254, 293
CviJI RGCY 8 cut(s) 6, 100, 104, 140, 188, 387, 413, 456
CviKI_1 RGCY 8 cut(s) 6, 100, 104, 140, 188, 387, 413, 456
DpnI GATC 3 cut(s) 11, 81, 273
DpnII GATC 3 cut(s) 9, 79, 271
DraI TTTAAA 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 113, 170
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 3 cut(s) 232, 257, 296
FaiI YATR 7 cut(s) 132, 134, 150, 183, 230, 255, 294
FaqI GGGAC 1 cut(s) 36
FatI CATG 3 cut(s) 228, 253, 292
FbaI TGATCA 2 cut(s) 9, 79
Fnu4HI GCNGC 3 cut(s) 186, 211, 457
FokI GGATG 2 cut(s) 41, 422
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 186, 211, 457
GluI GCNGC 3 cut(s) 186, 211, 457
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 20
Hin1II CATG 3 cut(s) 232, 257, 296
HinfI GANTC 2 cut(s) 43, 349
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 391, 422
Hpy188III TCNNGA 4 cut(s) 13, 83, 143, 346
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 185, 210, 253, 323, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
Hsp92II CATG 3 cut(s) 232, 257, 296
Ksp22I TGATCA 2 cut(s) 9, 79
Kzo9I GATC 3 cut(s) 9, 79, 271
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 11, 33, 68, 114, 315, 342, 369, 460
Lsp1109I GCAGC 2 cut(s) 197, 222
LweI GCATC 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 155, 263
MalI GATC 3 cut(s) 11, 81, 273
MboI GATC 3 cut(s) 9, 79, 271
MboII GAAGA 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 142, 228
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 148, 260
MnlI CCTC 7 cut(s) 41, 183, 186, 255, 276, 309, 370
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 21, 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 456
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 9, 79, 271
NlaIII CATG 3 cut(s) 232, 257, 296
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 325
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 187, 212, 458
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 113, 170
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 186, 211, 457
Sau3AI GATC 3 cut(s) 9, 79, 271
Sau96I GGNCC 2 cut(s) 113, 170
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 2 cut(s) 21, 357
SduI GDGCHC 2 cut(s) 142, 228
SetI ASST 6 cut(s) 8, 106, 175, 190, 381, 389
SfaNI GCATC 1 cut(s) 444
SinI GGWCC 2 cut(s) 113, 170
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SsiI CCGC 2 cut(s) 38, 457
StyD4I CCNGG 2 cut(s) 19, 355
TaqI TCGA 1 cut(s) 46
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 2 cut(s) 185, 210
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 113, 170
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.