Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Forward (+)

27458661 .. 27465769

Gene Structure 7109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27930.18

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

ATGTCTTCGTTAAGCAGGGAGCTGGTACTCTCGATCTTACAGTTCTTAGATGAGGAGAAGTTCAAGGAAACAGTTCATAAGCTTGAGCAAGAGTCTGGTTTTTTCTTCAATATGAAGCATTTTGAGGACCAAGTCCAGGCCGGAGAGTGGGATGAAGTTGAGCGCTATTTGTGTGGCTTCACTAAAGTTGAAGACAACCGTTATTCAATGAAGATTTTTTTTGAAATTAGGAAGCAGAAGTATTTGGAAGCTCTTGACAGGCAGGATAGGGCAAGGGCTGTTGAGATTCTTGTGAAGGACCTTAAGGTTTTTTCATCATTTAATGAGGAACTTTTCAAGGAGATCACCCAGTTGCTTACTCTTGATAACTTTAGGCAAAATGAGCAGCTTTCCAAGTATGGAGATACAAAATCGGCTCGGAATATCATGCTTATAGAACTTAAAAAGCTCATTGAGGCGAACCCATTATTTCGTGATAAGCTTGCATTCCCAGCCTTCAAAAGTTCACGACTTCGAACGTTAATCAACCAGAGTCTCAATTGGCAGCACCAGCTTTGCAAGAATCCCCGTCCAAACCCTGATATTAAAACACTATTTATGGATCATTCTTGCACTCCAACTGCTAACGGATCTCGTCCTCCACCCACAAATAGTCCCCTTGTAGGACCAATTCCAAAGGCTGGTGCATTTCCTCCTATTGCTGCCCTTGGTCCATTTCAACCTGTTGTCTCCCCATCTCCTGGTGCCATTGCTGGGTGGATGTCAAGCACTAACCCTCCTTTGCCCCACCCTGGTGTTGCAGCAGCTCCTCCTGGTATGCAGCCTTCTAGTGCAGCTGCTTTCCTGAAGCACCCAAGGACCCCTACAGGTGTTACAGGGATGGATTATCAATCAGCTGATTCAGAGCACTTGATGAAGCGTATTCGCACTGGTCAAGCTGATGAGGTATCCTTTTCTGGTGTGATGCATAATTCCAATGTCTATTCACAAGATGACCTTCCCAAGGCTGTTGTTCGTACCCTTAGTCAAGGATCTAATGTGATGAGCATGGACTTCCATCCACAACAACAAACTATTCTTCTAGTTGGAACAAATGTTGGTGATATCAGCCTCTGGGAAGTAGGGTCCCGGGAGAGGTTGGTACATAAGCCTTTCAAGGTTTGGGATATACAAACTGCGTCAACACCGTTGCAGACAGCTCTGGTGAATGATGCTGCAATATCAGTTAATCGTTGTGTATGGGCGCCAGATGGGTTTATGTTGGGTGTTGCATTTTCTAAGCACATTGTTCAGATATATAATTACAATCCAACTGGAGACCTGAGACAGCATTTGGAGATTGATGCTCATGTTGGTGGTGTTAATGACATTGCATTCGCTCACCCCAACAAGCAATTGTGTATTGTTACATGTGGAGATGATAGAGTGATTAAGGTATGGGATGCTGTAGCCGGACGCAAACAGTATACATTTGAAGGCCATGAAGCTCCTGTGTATTCAGTGTGCCCTCATTACAAAGAAAATATCCAGTTCATTTTTTCAACTGCCATTGATGGGAAAATTAAAGCTTGGCTATATGATTGCTTGGGATCACGAGTGGATTATGATGCTCCTGGACTTTGGTGCACTATGATGTCATATAGTGCAGATGGAACCAGACTCTTCTCATGTGGAACAAGTAAAGAAGGTGAATCCCATCTGGTGGAGTGGAATGAGAGTGAAGGGGCTATCAAAAGGACATATTCTGGTTTTAGAAAACGCTCTTTAGATGTTGTTCAATTTGACACAACAAGGAACCGATTCTTAGCTGCTGGTGATGACTTTCAAATTAAGTTCTGGGATATGGACAATACCAATGTGTTGACAGCTGTGGATGCAGATGGCGGTTTGCCTCCTAGTCCTAGACTGAGATTCAATAAAGAAGGGTCACTGTTGGCTGTAACAACAAATGACAGTGGTATTAAGATTTTAGCAAATAATGATGGCTTGCGCTTGATTAGAATGTTCGAGGGAAGGGCTATGGAGAAAAATAGAGGCACTACTGAGCCCATCAACTCTAAGCCTCTGATGGTCAATGCAATAGGCGCCATTGTGAATGTTCCTAACACTGTTGCTCCAGCCCTGGAACGTCCTGATAGAATACAACCAACTGTGTCTATCAGTCATCTAGGTACTATGGAGAACAGCAGGCTTGTTGATGTTAAACCACGGATTTCTGATGATATAGACAAGATTAAGAGCTGGAAAATTTCCGATGTTGCCGATCCCTCTCAAATGAAAGCTCTCCGACTTCCTGACTCTACAATTGCTGGAAAGATTGTGAGACTAATGTACACCAACAATGGCCTGGCTTTGTTAGCCCTTGCCTCCAATGCTGTTCACAAGCTTTGGAAATGGCAGCGTAATGAAAGGAATCCATCCGGGAAGGCTACTGCATATGTTGCACCACAGTTGTGGCAGCCTCCCAATGGAACTCTTATGACTAACGATGTAAATGACAATAAACCAGCTGAGGAGTCTACTGCGTGCATTGCTTTATCCAAGAATGATTCTTACGTCATGTCTGCATCTGGTGGGAAGGTCTCTTTGTTCAACATGATGACATTTAAGGTCATGACAACATTTGTATCTCCGCCTCCCGCAGCCACTTTTTTGGCATTTCATCCTCAAGACAATAATATAATTGCAATTGGCATGGAGGATTCTACTATATTAATATATAATGTTAGGGTTGATGATGTCAAAACCAAACTGAAAGGTCACCAGAATCGGATTACTGGCCTTGCATTTTCCCAAATTCATAATGTACTGGTATCTTCAGGTGCTGATACCCAGTTATGTGTGTGGAGCATTGATGGATGGGAGAAAAAGAAAACAAGGTTCATACAAGCACCAGCTGGTCGCCAACCCCCGATGGTTGGAGAAACAAAAGTTCAGTTTCATAATGATCACACACACCTGTTGGTTGCCCATGAAAGCCAAATTGCTGTGTATGATTGCAAGCTTGAATGTTTGTGCTCTTGGTCTCCGAAAGATGCACTCACTGCTTCCATATCAAGTGCAATATATTCATGCGATGGTCTACTGGTTTATGCTTCTTTTTGTGACGGTGCTGTTGGAGTTTTTGATGCTGATACCTTAAGACTGAGATGTCGAATAGCACCTACTGCTTATATACCATCATTTTCTCTCAGCGGAAACCCCAGCTATGCTTTGGTTATAGCAGCTCATCCGTCTGAGCCTAATCAGATTGCACTTGGCATGACTGACGGCTCAGTGCATGTAGTTGAACCATCTGAGGCAGAGCTGAAGTGGGGTGGGGCGCCCCCTCAAGACAACGGCCCTTCCAATTCGTCAAATCCTTCTCCTAGCGGTCAAGCATCTGAGCATCCTTCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1134

Amino Acids

125.26

Weight (kDa)

6.67

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3150
AccB1I	GGYRCC	4 cut(s)	743, 1243, 2084, 3322
AccB7I	CCANNNNNTGG	3 cut(s)	680, 740, 1702
AccI	GTMKAC	3 cut(s)	1466, 2519, 3082
AciI	CCGC	5 cut(s)	1884, 2633, 2640, 3195, 3372
AclI	AACGTT	1 cut(s)	518
AclWI	GGATC	5 cut(s)	609, 637, 1039, 1597, 2258
AcsI	RAATTY	2 cut(s)	2247, 2796
AcuI	CTGAAG	3 cut(s)	866, 2802, 3329
AcyI	GRCGYC	3 cut(s)	1244, 2085, 3323
AfaI	GTAC	6 cut(s)	27, 1018, 1143, 2173, 2333, 2808
AfeI	AGCGCT	1 cut(s)	164
AflII	CTTAAG	2 cut(s)	302, 3139
AflIII	ACRYGT	1 cut(s)	1409
AjnI	CCWGG	7 cut(s)	135, 739, 790, 811, 1612, 2121, 2346
AleI	CACNNNNGTG	2 cut(s)	792, 2452
Alw21I	GWGCWC	3 cut(s)	909, 1628, 3020
Alw26I	GTCTC	7 cut(s)	539, 733, 1311, 1318, 2317, 2587, 3030
Alw44I	GTGCAC	1 cut(s)	1624
AlwI	GGATC	5 cut(s)	609, 637, 1039, 1597, 2258
AlwNI	CAGNNNCTG	2 cut(s)	1113, 2825
Ama87I	CYCGRG	1 cut(s)	1128
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	5 cut(s)	138, 1477, 2344, 2779, 3340
ApaLI	GTGCAC	1 cut(s)	1624
ApoI	RAATTY	2 cut(s)	2247, 2796
ArsI	GACNNNNNNTTYG	2 cut(s)	1358, 1390
AseI	ATTAAT	1 cut(s)	2714
Asp700I	GAANNNNTTC	2 cut(s)	72, 1799
AspLEI	GCGC	5 cut(s)	165, 1246, 1992, 2087, 3325
AspS9I	GGNCC	7 cut(s)	127, 298, 665, 710, 858, 1125, 3341
AsuC2I	CCSGG	4 cut(s)	1129, 1130, 2422, 3397
AsuHPI	GGTGA	7 cut(s)	337, 1112, 1216, 1373, 1700, 1826, 2753
AsuII	TTCGAA	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	1128
AvaII	GGWCC	6 cut(s)	127, 298, 665, 710, 858, 1125
BaeGI	GKGCMC	2 cut(s)	1508, 1628
BaeI	ACNNNNGTAYC	2 cut(s)	2610, 2643
BanI	GGYRCC	4 cut(s)	743, 1243, 2084, 3322
BanII	GRGCYC	1 cut(s)	2049
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
BauI	CACGAG	1 cut(s)	1593
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	3 cut(s)	909, 1628, 3020
BbvCI	CCTCAGC	1 cut(s)	2511
BceAI	ACGGC	2 cut(s)	3286, 3355
BciT130I	CCWGG	7 cut(s)	137, 741, 792, 813, 1614, 2123, 2348
BciVI	GTATCC	1 cut(s)	958
BclI	TGATCA	1 cut(s)	2947
BcnI	CCSGG	4 cut(s)	1129, 1130, 2422, 3397
BcoDI	GTCTC	7 cut(s)	539, 733, 1311, 1318, 2317, 2587, 3030
BfaI	CTAG	6 cut(s)	828, 1082, 1896, 1902, 2168, 3369
BfmI	CTRYAG	2 cut(s)	864, 1446
BfoI	RGCGCY	4 cut(s)	166, 1247, 2088, 3326
BfrI	CTTAAG	2 cut(s)	302, 3139
BfuI	GTATCC	1 cut(s)	958
Bme18I	GGWCC	6 cut(s)	127, 298, 665, 710, 858, 1125
BmeT110I	CYCGRG	1 cut(s)	1128
BmgT120I	GGNCC	7 cut(s)	127, 298, 665, 710, 858, 1125, 3341
BmiI	GGNNCC	9 cut(s)	745, 860, 1126, 1127, 1245, 1654, 1796, 2086, 3324
BmrI	ACTGGG	2 cut(s)	343, 2827
BmuI	ACTGGG	2 cut(s)	343, 2827
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	2 cut(s)	1335, 2100
Bpu10I	CCTNAGC	1 cut(s)	2511
Bpu14I	TTCGAA	1 cut(s)	514
BpuEI	CTTGAG	3 cut(s)	104, 2652, 3315
BpuMI	CCSGG	4 cut(s)	1129, 1130, 2422, 3397
BsaHI	GRCGYC	3 cut(s)	1244, 2085, 3323
BsaI	GGTCTC	3 cut(s)	1311, 2587, 3030
BsaJI	CCNNGG	7 cut(s)	706, 790, 854, 1002, 1128, 2121, 2207
BsaXI	ACNNNNNCTCC	4 cut(s)	760, 790, 2098, 2128
Bse1I	ACTGG	8 cut(s)	349, 934, 1318, 1528, 2782, 2814, 2833, 3090
Bse3DI	GCAATG	3 cut(s)	747, 1368, 2529
BseBI	CCWGG	7 cut(s)	137, 741, 792, 813, 1614, 2123, 2348
BseDI	CCNNGG	7 cut(s)	706, 790, 854, 1002, 1128, 2121, 2207
BseMI	GCAATG	3 cut(s)	747, 1368, 2529
BseNI	ACTGG	8 cut(s)	349, 934, 1318, 1528, 2782, 2814, 2833, 3090
BseRI	GAGGAG	3 cut(s)	68, 798, 2528
BseSI	GKGCMC	2 cut(s)	1508, 1628
BseYI	CCCAGC	3 cut(s)	490, 752, 3203
BsgI	GTGCAG	2 cut(s)	852, 1665
BshFI	GGCC	5 cut(s)	140, 1479, 2346, 2781, 3342
BshNI	GGYRCC	4 cut(s)	743, 1243, 2084, 3322
BsiHKAI	GWGCWC	3 cut(s)	909, 1628, 3020
BsiHKCI	CYCGRG	1 cut(s)	1128
BsiSI	CCGG	5 cut(s)	141, 1129, 1452, 2421, 3397
BslFI	GGGAC	2 cut(s)	639, 1111
BsmAI	GTCTC	7 cut(s)	539, 733, 1311, 1318, 2317, 2587, 3030
BsmFI	GGGAC	2 cut(s)	639, 1111
BsmI	GAATGC	2 cut(s)	485, 1373
BsnI	GGCC	5 cut(s)	140, 1479, 2346, 2781, 3342
Bso31I	GGTCTC	3 cut(s)	1311, 2587, 3030
BsoBI	CYCGRG	1 cut(s)	1128
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	5 cut(s)	909, 1508, 1628, 2049, 3020
Bsp1407I	TGTACA	1 cut(s)	2331
Bsp143I	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
BspACI	CCGC	5 cut(s)	1884, 2633, 2640, 3195, 3372
BspANI	GGCC	5 cut(s)	140, 1479, 2346, 2781, 3342
BspHI	TCATGA	1 cut(s)	2613
BspLI	GGNNCC	9 cut(s)	745, 860, 1126, 1127, 1245, 1654, 1796, 2086, 3324
BspPI	GGATC	5 cut(s)	609, 637, 1039, 1597, 2258
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	4 cut(s)	743, 1243, 2084, 3322
BspTI	CTTAAG	2 cut(s)	302, 3139
BspTNI	GGTCTC	3 cut(s)	1311, 2587, 3030
BsrDI	GCAATG	3 cut(s)	747, 1368, 2529
BsrGI	TGTACA	1 cut(s)	2331
BsrI	ACTGG	8 cut(s)	349, 934, 1318, 1528, 2782, 2814, 2833, 3090
BssECI	CCNNGG	7 cut(s)	706, 790, 854, 1002, 1128, 2121, 2207
BssMI	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
BssNAI	GTATAC	1 cut(s)	1467
BssNI	GRCGYC	3 cut(s)	1244, 2085, 3323
BssSI	CACGAG	1 cut(s)	1593
BssT1I	CCWWGG	3 cut(s)	706, 854, 1002
Bst1107I	GTATAC	1 cut(s)	1467
Bst2BI	CACGAG	1 cut(s)	1593
Bst2UI	CCWGG	7 cut(s)	137, 741, 792, 813, 1614, 2123, 2348
Bst6I	CTCTTC	1 cut(s)	1667
BstACI	GRCGYC	3 cut(s)	1244, 2085, 3323
BstAFI	CTTAAG	2 cut(s)	302, 3139
BstAPI	GCANNNNNTGC	3 cut(s)	2441, 3044, 3167
BstAUI	TGTACA	1 cut(s)	2331
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	5 cut(s)	483, 1988, 2189, 2527, 3002
BstDSI	CCRYGG	1 cut(s)	2207
BstEII	GGTNACC	1 cut(s)	2759
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstH2I	RGCGCY	4 cut(s)	166, 1247, 2088, 3326
BstHHI	GCGC	5 cut(s)	165, 1246, 1992, 2087, 3325
BstKTI	GATC	8 cut(s)	36, 345, 604, 632, 1034, 1592, 2266, 2950
BstMAI	GTCTC	7 cut(s)	539, 733, 1311, 1318, 2317, 2587, 3030
BstMBI	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
BstNI	CCWGG	7 cut(s)	137, 741, 792, 813, 1614, 2123, 2348
BstNSI	RCATGY	2 cut(s)	1413, 3284
BstPI	GGTNACC	1 cut(s)	2759
BstSFI	CTRYAG	2 cut(s)	864, 1446
BstSLI	GKGCMC	2 cut(s)	1508, 1628
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	629, 1031
BstXI	CCANNNNNNTGG	2 cut(s)	2454, 2653
BstYI	RGATCY	2 cut(s)	629, 1031
BstZ17I	GTATAC	1 cut(s)	1467
BsuI	GTATCC	1 cut(s)	958
BsuRI	GGCC	5 cut(s)	140, 1479, 2346, 2781, 3342
BtgI	CCRYGG	1 cut(s)	2207
BtgZI	GCGATG	1 cut(s)	3090
BtsI	GCAGTG	1 cut(s)	3042
BtsIMutI	CAGTG	7 cut(s)	927, 1506, 1928, 1960, 2106, 3042, 3282
Cac8I	GCNNGC	5 cut(s)	483, 1988, 2189, 2527, 3002
CaiI	CAGNNNCTG	2 cut(s)	1113, 2825
CciI	TCATGA	1 cut(s)	2613
CfoI	GCGC	5 cut(s)	165, 1246, 1992, 2087, 3325
Cfr13I	GGNCC	7 cut(s)	127, 298, 665, 710, 858, 1125, 3341
Cfr9I	CCCGGG	1 cut(s)	1128
CseI	GACGC	2 cut(s)	1167, 1464
Csp6I	GTAC	6 cut(s)	26, 1017, 1142, 2172, 2332, 2807
CviQI	GTAC	6 cut(s)	26, 1017, 1142, 2172, 2332, 2807
DinI	GGCGCC	3 cut(s)	1245, 2086, 3324
DpnI	GATC	8 cut(s)	35, 344, 603, 631, 1033, 1591, 2265, 2949
DpnII	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
DrdI	GACNNNNNNGTC	1 cut(s)	3150
DseDI	GACNNNNNNGTC	1 cut(s)	3150
Eam1104I	CTCTTC	1 cut(s)	1667
EarI	CTCTTC	1 cut(s)	1667
EciI	GGCGGA	1 cut(s)	2622
Eco130I	CCWWGG	3 cut(s)	706, 854, 1002
Eco24I	GRGCYC	1 cut(s)	2049
Eco31I	GGTCTC	3 cut(s)	1311, 2587, 3030
Eco32I	GATATC	1 cut(s)	1105
Eco47I	GGWCC	6 cut(s)	127, 298, 665, 710, 858, 1125
Eco47III	AGCGCT	1 cut(s)	164
Eco57I	CTGAAG	3 cut(s)	866, 2802, 3329
Eco88I	CYCGRG	1 cut(s)	1128
Eco91I	GGTNACC	1 cut(s)	2759
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoO109I	RGGNCCY	3 cut(s)	298, 858, 1125
EcoO65I	GGTNACC	1 cut(s)	2759
EcoRII	CCWGG	7 cut(s)	135, 739, 790, 811, 1612, 2121, 2346
EcoRV	GATATC	1 cut(s)	1105
EcoT14I	CCWWGG	3 cut(s)	706, 854, 1002
EcoT22I	ATGCAT	1 cut(s)	969
EcoT38I	GRGCYC	1 cut(s)	2049
EgeI	GGCGCC	3 cut(s)	1245, 2086, 3324
EheI	GGCGCC	3 cut(s)	1245, 2086, 3324
ErhI	CCWWGG	3 cut(s)	706, 854, 1002
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	2 cut(s)	639, 1111
FauI	CCCGC	1 cut(s)	2647
FauNDI	CATATG	1 cut(s)	2437
FbaI	TGATCA	1 cut(s)	2947
FblI	GTMKAC	3 cut(s)	1466, 2519, 3082
FriOI	GRGCYC	1 cut(s)	2049
FspBI	CTAG	6 cut(s)	828, 1082, 1896, 1902, 2168, 3369
GlaI	GCGC	5 cut(s)	164, 1245, 1991, 2086, 3324
GsaI	CCCAGC	3 cut(s)	494, 756, 3207
GsuI	CTGGAG	2 cut(s)	1335, 2100
HaeII	RGCGCY	4 cut(s)	166, 1247, 2088, 3326
HaeIII	GGCC	5 cut(s)	140, 1479, 2346, 2781, 3342
HapII	CCGG	5 cut(s)	141, 1129, 1452, 2421, 3397
HgaI	GACGC	2 cut(s)	1167, 1464
HhaI	GCGC	5 cut(s)	165, 1246, 1992, 2087, 3325
Hin1I	GRCGYC	3 cut(s)	1244, 2085, 3323
Hin6I	GCGC	5 cut(s)	163, 1244, 1990, 2085, 3323
HinP1I	GCGC	5 cut(s)	163, 1244, 1990, 2085, 3323
HincII	GTYRAC	2 cut(s)	1182, 1863
HindII	GTYRAC	2 cut(s)	1182, 1863
HindIII	AAGCTT	5 cut(s)	80, 479, 1566, 2384, 3002
HpaII	CCGG	5 cut(s)	141, 1129, 1452, 2421, 3397
HphI	GGTGA	7 cut(s)	337, 1112, 1216, 1373, 1700, 1826, 2753
Hpy166II	GTNNAC	9 cut(s)	506, 1182, 1467, 1626, 1863, 2334, 2380, 2520, 3083
Hpy8I	GTNNAC	9 cut(s)	506, 1182, 1467, 1626, 1863, 2334, 2380, 2520, 3083
HpyCH4IV	ACGT	3 cut(s)	518, 2128, 2556
HpySE526I	ACGT	3 cut(s)	518, 2128, 2556
Hsp92I	GRCGYC	3 cut(s)	1244, 2085, 3323
HspAI	GCGC	5 cut(s)	163, 1244, 1990, 2085, 3323
KasI	GGCGCC	3 cut(s)	1243, 2084, 3322
KflI	GGGWCCC	1 cut(s)	1125
Ksp22I	TGATCA	1 cut(s)	2947
Kzo9I	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
LmnI	GCTCC	6 cut(s)	19, 811, 1492, 1615, 2119, 2847
MaeI	CTAG	6 cut(s)	828, 1082, 1896, 1902, 2168, 3369
MaeII	ACGT	3 cut(s)	518, 2128, 2556
MaeIII	GTNAC	6 cut(s)	871, 1405, 1926, 1939, 2759, 3104
MalI	GATC	8 cut(s)	35, 344, 603, 631, 1033, 1591, 2265, 2949
MboI	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
MboII	GAAGA	6 cut(s)	97, 203, 223, 1070, 1654, 2808
MfeI	CAATTG	4 cut(s)	538, 1394, 2304, 2688
MflI	RGATCY	2 cut(s)	629, 1031
MhlI	GDGCHC	5 cut(s)	909, 1508, 1628, 2049, 3020
Mly113I	GGCGCC	3 cut(s)	1244, 2085, 3323
MlyI	GAGTC	5 cut(s)	101, 541, 1653, 2291, 2525
MmeI	TCCRAC	6 cut(s)	641, 1066, 1334, 2311, 2899, 3097
Mph1103I	ATGCAT	1 cut(s)	969
MroXI	GAANNNNTTC	2 cut(s)	72, 1799
MslI	CAYNNNNRTG	4 cut(s)	792, 1353, 1631, 2452
MspA1I	CMGCKG	6 cut(s)	836, 896, 1868, 2510, 2897, 3195
MspCI	CTTAAG	2 cut(s)	302, 3139
MspI	CCGG	5 cut(s)	141, 1129, 1452, 2421, 3397
MunI	CAATTG	4 cut(s)	538, 1394, 2304, 2688
Mva1269I	GAATGC	2 cut(s)	485, 1373
MvaI	CCWGG	7 cut(s)	137, 741, 792, 813, 1614, 2123, 2348
NarI	GGCGCC	3 cut(s)	1244, 2085, 3323
NciI	CCSGG	4 cut(s)	1129, 1130, 2422, 3397
NdeI	CATATG	1 cut(s)	2437
NdeII	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
NlaIV	GGNNCC	9 cut(s)	745, 860, 1126, 1127, 1245, 1654, 1796, 2086, 3324
NmuCI	GTSAC	3 cut(s)	1926, 2759, 3104
NsiI	ATGCAT	1 cut(s)	969
NspI	RCATGY	2 cut(s)	1413, 3284
NspV	TTCGAA	1 cut(s)	514
OliI	CACNNNNGTG	2 cut(s)	792, 2452
PagI	TCATGA	1 cut(s)	2613
PciI	ACATGT	1 cut(s)	1409
PctI	GAATGC	2 cut(s)	485, 1373
PdmI	GAANNNNTTC	2 cut(s)	72, 1799
PflFI	GACNNNGTC	1 cut(s)	131
PflMI	CCANNNNNTGG	3 cut(s)	680, 740, 1702
PfoI	TCCNGGA	2 cut(s)	1612, 2420
PleI	GAGTC	5 cut(s)	100, 540, 1653, 2291, 2524
PluTI	GGCGCC	3 cut(s)	1247, 2088, 3326
PpsI	GAGTC	5 cut(s)	100, 540, 1653, 2291, 2524
PpuMI	RGGWCCY	3 cut(s)	298, 858, 1125
PscI	ACATGT	1 cut(s)	1409
PshBI	ATTAAT	1 cut(s)	2714
Psp1406I	AACGTT	1 cut(s)	518
Psp5II	RGGWCCY	3 cut(s)	298, 858, 1125
Psp6I	CCWGG	7 cut(s)	135, 739, 790, 811, 1612, 2121, 2346
PspEI	GGTNACC	1 cut(s)	2759
PspFI	CCCAGC	3 cut(s)	490, 752, 3203
PspGI	CCWGG	7 cut(s)	135, 739, 790, 811, 1612, 2121, 2346
PspN4I	GGNNCC	9 cut(s)	745, 860, 1126, 1127, 1245, 1654, 1796, 2086, 3324
PspPI	GGNCC	7 cut(s)	127, 298, 665, 710, 858, 1125, 3341
PspPPI	RGGWCCY	3 cut(s)	298, 858, 1125
PstNI	CAGNNNCTG	2 cut(s)	1113, 2825
PsuI	RGATCY	2 cut(s)	629, 1031
PsyI	GACNNNGTC	1 cut(s)	131
PvuII	CAGCTG	5 cut(s)	836, 896, 1868, 2510, 2897
RsaI	GTAC	6 cut(s)	27, 1018, 1143, 2173, 2333, 2808
RsaNI	GTAC	6 cut(s)	26, 1017, 1142, 2172, 2332, 2807
RseI	CAYNNNNRTG	4 cut(s)	792, 1353, 1631, 2452
Sau3AI	GATC	8 cut(s)	33, 342, 601, 629, 1031, 1589, 2263, 2947
Sau96I	GGNCC	7 cut(s)	127, 298, 665, 710, 858, 1125, 3341
SchI	GAGTC	5 cut(s)	101, 541, 1653, 2291, 2525
SduI	GDGCHC	5 cut(s)	909, 1508, 1628, 2049, 3020
SfcI	CTRYAG	2 cut(s)	864, 1446
SfoI	GGCGCC	3 cut(s)	1245, 2086, 3324
SfuI	TTCGAA	1 cut(s)	514
SinI	GGWCC	6 cut(s)	127, 298, 665, 710, 858, 1125
SmaI	CCCGGG	1 cut(s)	1130
SmiMI	CAYNNNNRTG	4 cut(s)	792, 1353, 1631, 2452
SmlI	CTYRAG	5 cut(s)	83, 302, 2667, 3139, 3330
SmoI	CTYRAG	5 cut(s)	83, 302, 2667, 3139, 3330
SsiI	CCGC	5 cut(s)	1884, 2633, 2640, 3195, 3372
SspDI	GGCGCC	3 cut(s)	1243, 2084, 3322
SspMI	CTAG	6 cut(s)	828, 1082, 1896, 1902, 2168, 3369
StyI	CCWWGG	3 cut(s)	706, 854, 1002
TaiI	ACGT	3 cut(s)	521, 2131, 2559
TaqI	TCGA	4 cut(s)	32, 514, 2007, 3154
TatI	WGTACW	2 cut(s)	2331, 2806
TscAI	CASTG	7 cut(s)	934, 1506, 1935, 1960, 2113, 3049, 3282
TseFI	GTSAC	3 cut(s)	1926, 2759, 3104
Tsp45I	GTSAC	3 cut(s)	1926, 2759, 3104
TspGWI	ACGGA	3 cut(s)	642, 2224, 3222
TspMI	CCCGGG	1 cut(s)	1128
TspRI	CASTG	7 cut(s)	934, 1506, 1935, 1960, 2113, 3049, 3282
Tth111I	GACNNNGTC	1 cut(s)	131
Van91I	CCANNNNNTGG	3 cut(s)	680, 740, 1702
Vha464I	CTTAAG	2 cut(s)	302, 3139
VneI	GTGCAC	1 cut(s)	1624
VpaK11BI	GGWCC	6 cut(s)	127, 298, 665, 710, 858, 1125
VspI	ATTAAT	1 cut(s)	2714
XagI	CCTNNNNNAGG	1 cut(s)	1001
XapI	RAATTY	2 cut(s)	2247, 2796
XceI	RCATGY	2 cut(s)	1413, 3284
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2344, 3211
XmaI	CCCGGG	1 cut(s)	1128
XmiI	GTMKAC	3 cut(s)	1466, 2519, 3082
XmnI	GAANNNNTTC	2 cut(s)	72, 1799
XspI	CTAG	6 cut(s)	828, 1082, 1896, 1902, 2168, 3369
Zsp2I	ATGCAT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.