Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Reverse (-)

67737039 .. 67737458

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG459200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTGGGCTCGCGAATATATCTGTGACGATGATGTTGGACCCCCTCTCTATGCAGCTCCTATGTTTTGTCTTATTTGCAGCAAGTATTTTGAGCACATGACTAAAGACTGCCCTCATTTGTATGATGAGAGTTACAGCGATCGCCGTTGGAGGATTTTTCATGTCCCTCCTGTTTTTAAAACCGCTAATGCATTGATAATGCAGATATTTGTCAGGACTCTCCCTGGAAAGATCCTAACCCTTGAGGTTGAAAGCTCTGACACCATTTACAATGTCAAAGCCAAAATCCGAGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGCTGCTTTTGAATCGCATGCTTCTCGAGGAGGGGCGCACCCTTGCTGACTACAATATCCAAAACGAATCCACTCTTCACCTGGTGCTAAGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

139

Amino Acids

16.32

Weight (kDa)

6.07

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	67 - 137	7.4e-11	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	69 - 139	4.1e-24	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	251, 334
AjnI	CCWGG	2 cut(s)	223, 402
AluBI	AGCT	2 cut(s)	56, 255
AluI	AGCT	2 cut(s)	56, 255
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	53, 78, 325
AsiSI	GCGATCGC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	65, 90, 312
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	2 cut(s)	225, 404
BcoDI	GTCTC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	54, 79, 326
BlsI	GCNGC	3 cut(s)	55, 80, 327
Bme1390I	CCNGG	2 cut(s)	225, 404
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	225, 404
BmsI	GCATC	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	225, 404
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	65, 90, 312
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	10, 96
Bsp143I	GATC	2 cut(s)	139, 231
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	139, 231
Bst2UI	CCWGG	2 cut(s)	225, 404
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	10, 341
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	2 cut(s)	142, 234
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	139, 231
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	2 cut(s)	225, 404
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	223, 402
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	65, 90, 312
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	303
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	10, 341
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	402
CviAII	CATG	3 cut(s)	97, 161, 340
CviJI	RGCY	5 cut(s)	8, 56, 255, 281, 325
CviKI_1	RGCY	5 cut(s)	8, 56, 255, 281, 325
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	2 cut(s)	141, 233
DpnII	GATC	2 cut(s)	139, 231
DraI	TTTAAA	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	223, 402
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	3 cut(s)	100, 164, 343
FaiI	YATR	7 cut(s)	18, 51, 62, 98, 123, 162, 341
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	96, 160, 339
Fnu4HI	GCNGC	3 cut(s)	54, 79, 326
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	54, 79, 326
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	54, 79, 326
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	100, 164, 343
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	217, 334, 389
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	259, 290
Hpy188III	TCNNGA	3 cut(s)	11, 214, 347
HpyAV	CCTTC	1 cut(s)	293
HpyCH4V	TGCA	4 cut(s)	53, 78, 191, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	100, 164, 343
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	139, 231
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	8 cut(s)	183, 199, 210, 237, 324, 329, 389, 416
Lsp1109I	GCAGC	3 cut(s)	65, 90, 312
LweI	GCATC	1 cut(s)	312
MabI	ACCWGGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	23, 131
MalI	GATC	2 cut(s)	141, 233
MboI	GATC	2 cut(s)	139, 231
MboII	GAAGA	1 cut(s)	389
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	10, 96
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	16, 128
MnlI	CCTC	7 cut(s)	54, 123, 144, 177, 238, 343, 346
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	225, 404
MvaI	CCWGG	2 cut(s)	225, 404
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	2 cut(s)	139, 231
NlaIII	CATG	3 cut(s)	100, 164, 343
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	23
NruI	TCGCGA	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	334, 389
PkrI	GCNGC	3 cut(s)	55, 80, 327
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	223, 402
PspGI	CCWGG	2 cut(s)	223, 402
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	142
RgaI	GCGATCGC	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	3 cut(s)	54, 79, 326
Sau3AI	GATC	2 cut(s)	139, 231
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	225, 404
SduI	GDGCHC	2 cut(s)	10, 96
SetI	ASST	5 cut(s)	58, 249, 257, 405, 416
SexAI	ACCWGGT	1 cut(s)	402
SfaAI	GCGATCGC	1 cut(s)	142
SfaNI	GCATC	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	347
SgfI	GCGATCGC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	242, 347
SmoI	CTYRAG	2 cut(s)	242, 347
SphI	GCATGC	1 cut(s)	343
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	223, 402
TaqI	TCGA	1 cut(s)	348
TfiI	GAWTC	2 cut(s)	334, 389
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	3 cut(s)	53, 78, 325
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	38
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.