Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Forward (+)

30007912 .. 30016651

Gene Structure 8740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3393 bp

ATGTCTTCGTTAAGTAGGGAACTGGTATTCTTGATATTGCAGTTCTTAGACGAAGAGAAGTTCAAGGAAACAGTTCATAAGCTTGAGCAAGAGTCTGGATTTTTCTTCAATATGAAACATTTTGAGGATCAAGTTCAGGCTGGAGAGTGGGATGAAGTTGAGCGCTATTTGTGTGGCTTCACTAAAGTGGAAGACAACCGATATTCAATGAAGATTTTTTTTGAAATTAGGAAGCAGAAGTATTTGGAAGCTCTTGACAGGCAGGATAGGGCGAAGGCTGTTGAGATTCTTGTGAAGGACCTTAAGGTTTTTGCATCATTTAATGAGGAACTTTTCAAGGAGATCACCCAGTTGCTAACTCTTGATAACTTTAGGCAAAACGAGCAGCTTTCCAAGTATGGAGACACAAAATCGGCTCGGAATATTATGCTTATAGAACTTAAAAAGCTCATTGAGGCGAACCCATTATTTCGCGATAAGCTTGCGTTTCCAGCCTTCAAAAGCTCACGTCTACGGACGTTAATAAATCAGAGTCTCAATTGGCAGCACCAGCTTTGCAAGAATCCCCGTCCAAACCCTGATATTAAAACACTATTTATGGATCATTCTTGCACTCCAACTGCTAATGGATCTCGTCCTCCTCCGACAAACAGTCCCCTTGTAGGACCAATTCCAAAGGCTGGCGCATTTCCTCCTATTGGTGCCCATGGCCCATTCCAACCTGTTGTCTCCCCATCTCCTGGTTGGATGTCTAGCACTAATCCTTCATTGCCTCACCCTGCTGTGGCAGCAGCTCCTCCTGGTCTCGTGCAGCCTTCTAGTGCAGCTGCTTTCTTGAAGCACCCAAGGACTCCTACAGGTGTTACAGGGATGGATTATCAATCAGCTGATTCGGAGCACTTGATGAAGCGTATTCGCACTGGCCAAGCTGATGAGGTGTCATTTTCTGGTGTGATGCATAATTCCAATGTCTACTCGCAAGATGACCTTCCTAAGGCTGTTGTTCGTACCCTTAGTCAAGGATCTAATGTAATGAGCATGGACTTTCATCCACAACAACAAACTATTCTTCTAGTTGGGACAAATGTTGGTGACATCAGTCTTTGGGAAGTAGGGTCCCGGGAAAGGCTGGTACATAAACCTTTCAAGGTTTGGGATATGCAAACTGCCTCAACGCCATTGCAGACAGCTTTGGTGAATGATGCTGCAATATCAGTGAATCGTTGTGTTTGGGGGCCAGATGGACTTATGCTTGGTGTTGCATTTTCGAAGCACATTGTTCAGATATATACTTACAATCCAACTGGAGAACTGAGACAACATTTTGAGATTGATGCTCATGTTGGTGGGGTTAATGACATTGCATTCGCTCATCCCAACAAGCAATTGTGTATTGTTACGTGTGGAGATGATAAAGTGATTAAGGTGTGGGATGCTGCAGGTGGACGCCGACAATATACATTTGAAGGCCATGAAGCTCCTGTGTATTCAGTTTGCCCTCATTACAAAGAAAATATTCAGTTCATTTTTTCAACTGCTATTGATGGGAAGATTAAAGCTTGGCTATACGATTGCTTGGGATCAAGGGTGGACTATGATGCTCCTGGACTTTGGTGCACCATGATGTCATATAGTGCAGATGGAACCAGGCTCTTCTCATGCGGAACAAGTAAAGAAGGTGAATCCCATCTGGTGGAGTGGAATGAGAGTGAAGGGGCTATCAAACGGACATATTCTGGATTTAGGAAGCGCTCTTTAGACGTTGTCCAGTTTGACACAACAAGGAACCGATTCTTAGCTGCTGGTGATGAATTTCAAATTAAGTTCTGGGATATGGATAATACCAATGTGTTGACAGCAGTTGATGCAGATGGCGGTTTGCCTGCTAGTCCTAGACTGAGATTCAACAAAGAAGGGTCACTGTTGGCTGTAACAACGAATGACAGTGGTATTAAGATCTTAGCAAATAATGATGGTTTGCGCTTGATTAGAATGTTGGAGGGAAGGGCTATGGAGAAAAATCGAGGCACTTCTGAGCCCATCAACTCTAAGCCTCTGATTGTTAATGCACTAGGCCCCATTGTGAATGTTCCTAATGCTGTTCCTCCAGCCCTGGAACGTCCTGATAGAATCCAACCAGCTGTGTCTATCAGTAATCTGGGTACTATGGAGAACAGCAGGCTCGTTGATGTTAAACCTCGGATTTCCGAGGATATAGACAAGATTAAGAGCTGGAAAATTTCTGATATTGCGGATCCCTCACAAATGAAAGCTCTGCGATTGCCTGACTCTACAACTGCTGGAAAGATTGTGAGACTAATGTACACAAACAATGGCCTGGCTCTGTTAGCCCTCACCTCCAATGCCGTTCACAAGCTTTGGAAATGGCAGCGTAATGAAAGGAATCCATCAGGGAAGGCTACTGCATATGTTACACCACAGTTGTGGCAGCCTCCCAATGGAACTCTCATGACTAATGATGTGAATGACAATAAACCAGCTGAGGAATCTACTGCGTGTATTGCTTTATCCAAAAATGATTCTTATGTCATGTCTGCATCTGGTGGGAAAGTCTCTCTGTTCAACATGATGACGTTTAAGGTCATGACAACATTTGTTTCTCCCCCTCCCGCAGCCACTTTTTTGGCATTTCATCCTCAAGACAATAATATAATTGCTATTGGCATGGAGGATTCTACTATTTTAATATATAATGTTAGGGTTGATGAGGTTAAAACCAAACTGAAGGGTCATCAGAATCGGATTACAGGCCTTGCATTTTCTCAAAGTCTTAATGTACTGGTTTCTTCAGGTGCTGATACCCAGTTATGCGTGTGGAGCATTGATGGATGGGAGAAAAAGAAAACAAGGTTTATACAAGCACCAGCTGGTCGCCAATCCCCGTTGGTTGGAGAAACAAAAGTTCAGTTTCATAATGATCACACACACCTGTTGGTTGCTCATGAAAGCCAACTTGCTGTGTATGATTGCAAGCTTGATTGTTTGCGCTCATGGTCTCCAAAAGATGCACTTGCCGCTCCCATCTCAAGTGCAATATATTCATGCGATGGTCTATTGGTTTATGCTACCTTTTGTGACGGTGCTGTTGGAGTTTTTGATGCTGATACCTTAAGACTCAGATGTCGAGTAGCACCTACTGCGTATATACCATCATTTTCTCTCAGCGGCAACCCCACCTATCCTTTGGTTATAGCAGCTCATCCGTCTGAGCCTAACCAGATTGCAGTCGGCATGACTGATGGCTCAGTGCATGTAGTTGAACCGTCTGATGTAGAGCTGAAGTGGGGCGGGGCACCGTCTCAAGATAATGGCCCTTCCAATTCGTCAAATCCTTCGCCTAGTGGTCAAGCATCAGAACTTCCTTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1131

Amino Acids

124.95

Weight (kDa)

6.73

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1430
AasI	GACNNNNNNGTC	1 cut(s)	3141
Acc36I	ACCTGC	1 cut(s)	1430
AccB1I	GGYRCC	2 cut(s)	701, 3313
AccB7I	CCANNNNNTGG	3 cut(s)	680, 740, 1693
AccBSI	CCGCTC	1 cut(s)	3038
AccI	GTMKAC	2 cut(s)	511, 972
AccII	CGCG	1 cut(s)	474
AciI	CCGC	7 cut(s)	1662, 1875, 2252, 2631, 3036, 3186, 3309
AclWI	GGATC	7 cut(s)	135, 609, 637, 1030, 1588, 2249, 2262
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	2 cut(s)	1811, 2238
AcuI	CTGAAG	3 cut(s)	2765, 2793, 3320
AcyI	GRCGYC	1 cut(s)	1447
AfaI	GTAC	5 cut(s)	1009, 1134, 2164, 2324, 2799
AfeI	AGCGCT	2 cut(s)	164, 1751
AflII	CTTAAG	2 cut(s)	302, 3130
AflIII	ACRYGT	1 cut(s)	1400
AhdI	GACNNNNNGTC	1 cut(s)	651
AjiI	CACGTC	1 cut(s)	509
AjnI	CCWGG	7 cut(s)	739, 799, 1603, 1646, 2112, 2337, 3386
AleI	CACNNNNGTG	2 cut(s)	185, 2443
Alw21I	GWGCWC	2 cut(s)	900, 1619
Alw26I	GTCTC	9 cut(s)	396, 539, 733, 809, 1309, 2308, 2578, 3021, 3324
Alw44I	GTGCAC	1 cut(s)	1615
AlwI	GGATC	7 cut(s)	135, 609, 637, 1030, 1588, 2249, 2262
AlwNI	CAGNNNCTG	1 cut(s)	2816
Ama87I	CYCGRG	1 cut(s)	1119
Aor51HI	AGCGCT	2 cut(s)	164, 1751
AoxI	GGCC	8 cut(s)	709, 922, 1235, 1468, 2074, 2335, 2770, 3331
ApaLI	GTGCAC	1 cut(s)	1615
ApoI	RAATTY	2 cut(s)	1811, 2238
ArsI	GACNNNNNNTTYG	2 cut(s)	1349, 1381
Asp700I	GAANNNNTTC	3 cut(s)	72, 1515, 1790
AspLEI	GCGC	5 cut(s)	165, 686, 1752, 1983, 3009
AspS9I	GGNCC	7 cut(s)	298, 665, 710, 1116, 1235, 2075, 3332
AsuC2I	CCSGG	2 cut(s)	1120, 1121
AsuHPI	GGTGA	7 cut(s)	337, 767, 1103, 1207, 1691, 1817, 2347
AsuII	TTCGAA	1 cut(s)	1268
AvaI	CYCGRG	1 cut(s)	1119
AvaII	GGWCC	3 cut(s)	298, 665, 1116
AxyI	CCTNAGG	1 cut(s)	993
BaeGI	GKGCMC	3 cut(s)	706, 1619, 3316
BalI	TGGCCA	1 cut(s)	924
BamHI	GGATCC	1 cut(s)	2254
BanI	GGYRCC	2 cut(s)	701, 3313
BanII	GRGCYC	1 cut(s)	2040
BauI	CACGAG	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	900, 1619
BbvCI	CCTCAGC	1 cut(s)	2502
BceAI	ACGGC	1 cut(s)	2351
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	7 cut(s)	741, 801, 1605, 1648, 2114, 2339, 3388
BclI	TGATCA	1 cut(s)	2938
BcnI	CCSGG	2 cut(s)	1120, 1121
BcoDI	GTCTC	9 cut(s)	396, 539, 733, 809, 1309, 2308, 2578, 3021, 3324
BfaI	CTAG	7 cut(s)	753, 819, 1073, 1887, 1893, 2072, 3360
BfmI	CTRYAG	2 cut(s)	855, 1437
BfoI	RGCGCY	2 cut(s)	166, 1753
BfrI	CTTAAG	2 cut(s)	302, 3130
BfuAI	ACCTGC	1 cut(s)	1430
BglII	AGATCT	1 cut(s)	1956
Bme1390I	CCNGG	9 cut(s)	741, 801, 1120, 1121, 1605, 1648, 2114, 2339, 3388
Bme18I	GGWCC	3 cut(s)	298, 665, 1116
BmeRI	GACNNNNNGTC	1 cut(s)	651
BmeT110I	CYCGRG	1 cut(s)	1119
BmgBI	CACGTC	1 cut(s)	509
BmgT120I	GGNCC	7 cut(s)	298, 665, 710, 1116, 1235, 2075, 3332
BmiI	GGNNCC	9 cut(s)	703, 1117, 1118, 1236, 1645, 1787, 2077, 2256, 3315
BmrFI	CCNGG	9 cut(s)	741, 801, 1120, 1121, 1605, 1648, 2114, 2339, 3388
BmrI	ACTGGG	2 cut(s)	343, 2818
BmuI	ACTGGG	2 cut(s)	343, 2818
BoxI	GACNNNNGTC	1 cut(s)	1098
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	3 cut(s)	162, 1326, 2091
Bpu10I	CCTNAGC	1 cut(s)	2502
Bpu14I	TTCGAA	1 cut(s)	1268
BpuEI	CTTGAG	4 cut(s)	104, 2643, 3031, 3306
BpuMI	CCSGG	2 cut(s)	1120, 1121
BsaAI	YACGTR	1 cut(s)	1401
BsaHI	GRCGYC	1 cut(s)	1447
BsaI	GGTCTC	2 cut(s)	809, 3021
BsaJI	CCNNGG	6 cut(s)	706, 845, 1119, 2112, 2198, 2208
Bse1I	ACTGG	7 cut(s)	27, 349, 925, 1309, 1768, 2805, 2824
Bse21I	CCTNAGG	1 cut(s)	993
Bse3DI	GCAATG	3 cut(s)	767, 1178, 1359
BseBI	CCWGG	7 cut(s)	741, 801, 1605, 1648, 2114, 2339, 3388
BseDI	CCNNGG	6 cut(s)	706, 845, 1119, 2112, 2198, 2208
BseGI	GGATG	9 cut(s)	157, 753, 876, 1048, 1372, 1438, 2653, 2855, 3220
BseMI	GCAATG	3 cut(s)	767, 1178, 1359
BseMII	CTCAG	8 cut(s)	1304, 1889, 2025, 2493, 3151, 3196, 3219, 3279
BseNI	ACTGG	7 cut(s)	27, 349, 925, 1309, 1768, 2805, 2824
BseRI	GAGGAG	2 cut(s)	630, 786
BseSI	GKGCMC	3 cut(s)	706, 1619, 3316
BsgI	GTGCAG	3 cut(s)	830, 843, 1656
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	8 cut(s)	711, 924, 1237, 1470, 2076, 2337, 2772, 3333
BshNI	GGYRCC	2 cut(s)	701, 3313
BsiHKAI	GWGCWC	2 cut(s)	900, 1619
BsiHKCI	CYCGRG	1 cut(s)	1119
BsiSI	CCGG	1 cut(s)	1120
BslFI	GGGAC	3 cut(s)	639, 1093, 1102
BsmAI	GTCTC	9 cut(s)	396, 539, 733, 809, 1309, 2308, 2578, 3021, 3324
BsmBI	CGTCTC	1 cut(s)	3324
BsmFI	GGGAC	3 cut(s)	639, 1093, 1102
BsmI	GAATGC	1 cut(s)	1364
BsnI	GGCC	8 cut(s)	711, 924, 1237, 1470, 2076, 2337, 2772, 3333
Bso31I	GGTCTC	2 cut(s)	809, 3021
BsoBI	CYCGRG	1 cut(s)	1119
Bsp119I	TTCGAA	1 cut(s)	1268
Bsp1286I	GDGCHC	5 cut(s)	706, 900, 1619, 2040, 3316
Bsp1407I	TGTACA	1 cut(s)	2322
Bsp143I	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
Bsp19I	CCATGG	1 cut(s)	706
Bsp68I	TCGCGA	1 cut(s)	474
BspACI	CCGC	7 cut(s)	1662, 1875, 2252, 2631, 3036, 3186, 3309
BspANI	GGCC	8 cut(s)	711, 924, 1237, 1470, 2076, 2337, 2772, 3333
BspCNI	CTCAG	8 cut(s)	1305, 1890, 2026, 2494, 3150, 3195, 3220, 3278
BspFNI	CGCG	1 cut(s)	474
BspHI	TCATGA	3 cut(s)	2469, 2604, 2962
BspLI	GGNNCC	9 cut(s)	703, 1117, 1118, 1236, 1645, 1787, 2077, 2256, 3315
BspMAI	CTGCAG	1 cut(s)	1441
BspMI	ACCTGC	1 cut(s)	1430
BspPI	GGATC	7 cut(s)	135, 609, 637, 1030, 1588, 2249, 2262
BspQI	GCTCTTC	1 cut(s)	1658
BspT104I	TTCGAA	1 cut(s)	1268
BspT107I	GGYRCC	2 cut(s)	701, 3313
BspTI	CTTAAG	2 cut(s)	302, 3130
BspTNI	GGTCTC	2 cut(s)	809, 3021
BsrBI	CCGCTC	1 cut(s)	3038
BsrDI	GCAATG	3 cut(s)	767, 1178, 1359
BsrGI	TGTACA	1 cut(s)	2322
BsrI	ACTGG	7 cut(s)	27, 349, 925, 1309, 1768, 2805, 2824
BssECI	CCNNGG	6 cut(s)	706, 845, 1119, 2112, 2198, 2208
BssMI	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
BssNI	GRCGYC	1 cut(s)	1447
BssSI	CACGAG	1 cut(s)	806
BssT1I	CCWWGG	2 cut(s)	706, 845
Bst2BI	CACGAG	1 cut(s)	806
Bst2UI	CCWGG	7 cut(s)	741, 801, 1605, 1648, 2114, 2339, 3388
Bst4CI	ACNGT	8 cut(s)	73, 653, 1923, 1946, 2442, 3101, 3285, 3318
Bst6I	CTCTTC	2 cut(s)	48, 1658
BstACI	GRCGYC	1 cut(s)	1447
BstAFI	CTTAAG	2 cut(s)	302, 3130
BstAPI	GCANNNNNTGC	2 cut(s)	1865, 3158
BstAUI	TGTACA	1 cut(s)	2322
BstBAI	YACGTR	1 cut(s)	1401
BstBI	TTCGAA	1 cut(s)	1268
BstC8I	GCNNGC	5 cut(s)	483, 682, 1884, 2180, 2993
BstDSI	CCRYGG	1 cut(s)	706
BstENI	CCTNNNNNAGG	1 cut(s)	992
BstF5I	GGATG	9 cut(s)	157, 753, 876, 1048, 1372, 1438, 2653, 2855, 3220
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	2 cut(s)	166, 1753
BstHHI	GCGC	5 cut(s)	165, 686, 1752, 1983, 3009
BstKTI	GATC	9 cut(s)	130, 345, 604, 632, 1025, 1583, 1959, 2257, 2941
BstMAI	GTCTC	9 cut(s)	396, 539, 733, 809, 1309, 2308, 2578, 3021, 3324
BstMBI	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
BstNI	CCWGG	7 cut(s)	741, 801, 1605, 1648, 2114, 2339, 3388
BstNSI	RCATGY	1 cut(s)	3275
BstPAI	GACNNNNGTC	1 cut(s)	1098
BstSCI	CCNGG	9 cut(s)	739, 799, 1118, 1119, 1603, 1646, 2112, 2337, 3386
BstSFI	CTRYAG	2 cut(s)	855, 1437
BstSLI	GKGCMC	3 cut(s)	706, 1619, 3316
BstUI	CGCG	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	4 cut(s)	629, 1022, 1956, 2254
BstXI	CCANNNNNNTGG	2 cut(s)	2445, 2644
BstYI	RGATCY	4 cut(s)	629, 1022, 1956, 2254
Bsu36I	CCTNAGG	1 cut(s)	993
BsuRI	GGCC	8 cut(s)	711, 924, 1237, 1470, 2076, 2337, 2772, 3333
BtgI	CCRYGG	1 cut(s)	706
BtgZI	GCGATG	1 cut(s)	3081
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	9 cut(s)	157, 753, 876, 1048, 1372, 1438, 2653, 2855, 3220
BtsIMutI	CAGTG	5 cut(s)	918, 1221, 1919, 1951, 3273
BtuMI	TCGCGA	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	1430
Cac8I	GCNNGC	5 cut(s)	483, 682, 1884, 2180, 2993
CaiI	CAGNNNCTG	1 cut(s)	2816
CciI	TCATGA	3 cut(s)	2469, 2604, 2962
CfoI	GCGC	5 cut(s)	165, 686, 1752, 1983, 3009
Cfr13I	GGNCC	7 cut(s)	298, 665, 710, 1116, 1235, 2075, 3332
Cfr9I	CCCGGG	1 cut(s)	1119
CseI	GACGC	1 cut(s)	1455
Csp6I	GTAC	5 cut(s)	1008, 1133, 2163, 2323, 2798
CviQI	GTAC	5 cut(s)	1008, 1133, 2163, 2323, 2798
DpnI	GATC	9 cut(s)	129, 344, 603, 631, 1024, 1582, 1958, 2256, 2940
DpnII	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
DrdI	GACNNNNNNGTC	1 cut(s)	3141
DriI	GACNNNNNGTC	1 cut(s)	651
DseDI	GACNNNNNNGTC	1 cut(s)	3141
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	48, 1658
Eam1105I	GACNNNNNGTC	1 cut(s)	651
EarI	CTCTTC	2 cut(s)	48, 1658
Eco130I	CCWWGG	2 cut(s)	706, 845
Eco147I	AGGCCT	1 cut(s)	2772
Eco24I	GRGCYC	1 cut(s)	2040
Eco31I	GGTCTC	2 cut(s)	809, 3021
Eco47I	GGWCC	3 cut(s)	298, 665, 1116
Eco47III	AGCGCT	2 cut(s)	164, 1751
Eco57I	CTGAAG	3 cut(s)	2765, 2793, 3320
Eco81I	CCTNAGG	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	1119
EcoNI	CCTNNNNNAGG	1 cut(s)	992
EcoO109I	RGGNCCY	3 cut(s)	298, 1116, 2075
EcoRII	CCWGG	7 cut(s)	739, 799, 1603, 1646, 2112, 2337, 3386
EcoT14I	CCWWGG	2 cut(s)	706, 845
EcoT22I	ATGCAT	1 cut(s)	960
EcoT38I	GRGCYC	1 cut(s)	2040
ErhI	CCWWGG	2 cut(s)	706, 845
Esp3I	CGTCTC	1 cut(s)	3324
FalI	AAGNNNNNCTT	4 cut(s)	972, 1004, 3015, 3047
FaqI	GGGAC	3 cut(s)	639, 1093, 1102
FauI	CCCGC	2 cut(s)	2638, 3302
FauNDI	CATATG	1 cut(s)	2428
FbaI	TGATCA	1 cut(s)	2938
FblI	GTMKAC	2 cut(s)	511, 972
FokI	GGATG	9 cut(s)	164, 760, 883, 1035, 1359, 1445, 2640, 2862, 3207
FriOI	GRGCYC	1 cut(s)	2040
FspBI	CTAG	7 cut(s)	753, 819, 1073, 1887, 1893, 2072, 3360
GlaI	GCGC	5 cut(s)	164, 685, 1751, 1982, 3008
GsuI	CTGGAG	3 cut(s)	162, 1326, 2091
HaeII	RGCGCY	2 cut(s)	166, 1753
HaeIII	GGCC	8 cut(s)	711, 924, 1237, 1470, 2076, 2337, 2772, 3333
HapII	CCGG	1 cut(s)	1120
HgaI	GACGC	1 cut(s)	1455
HhaI	GCGC	5 cut(s)	165, 686, 1752, 1983, 3009
Hin1I	GRCGYC	1 cut(s)	1447
Hin6I	GCGC	5 cut(s)	163, 684, 1750, 1981, 3007
HinP1I	GCGC	5 cut(s)	163, 684, 1750, 1981, 3007
HincII	GTYRAC	1 cut(s)	1854
HindII	GTYRAC	1 cut(s)	1854
HindIII	AAGCTT	5 cut(s)	80, 479, 1557, 2375, 2993
HpaII	CCGG	1 cut(s)	1120
HphI	GGTGA	7 cut(s)	337, 767, 1103, 1207, 1691, 1817, 2347
Hpy166II	GTNNAC	8 cut(s)	512, 973, 1445, 1591, 1617, 1854, 2325, 2371
Hpy8I	GTNNAC	8 cut(s)	512, 973, 1445, 1591, 1617, 1854, 2325, 2371
HpyCH4III	ACNGT	8 cut(s)	73, 653, 1923, 1946, 2442, 3101, 3285, 3318
HpyCH4IV	ACGT	6 cut(s)	508, 518, 1400, 1761, 2119, 2594
HpySE526I	ACGT	6 cut(s)	508, 518, 1400, 1761, 2119, 2594
Hsp92I	GRCGYC	1 cut(s)	1447
HspAI	GCGC	5 cut(s)	163, 684, 1750, 1981, 3007
KflI	GGGWCCC	1 cut(s)	1116
Ksp22I	TGATCA	1 cut(s)	2938
Kzo9I	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
LguI	GCTCTTC	1 cut(s)	1658
LmnI	GCTCC	6 cut(s)	799, 895, 1483, 1606, 2838, 3043
MaeI	CTAG	7 cut(s)	753, 819, 1073, 1887, 1893, 2072, 3360
MaeII	ACGT	6 cut(s)	508, 518, 1400, 1761, 2119, 2594
MaeIII	GTNAC	7 cut(s)	862, 1091, 1396, 1917, 1930, 2431, 3095
MalI	GATC	9 cut(s)	129, 344, 603, 631, 1024, 1582, 1958, 2256, 2940
MbiI	CCGCTC	1 cut(s)	3038
MboI	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
MboII	GAAGA	8 cut(s)	65, 97, 203, 223, 1061, 1561, 1645, 2799
MfeI	CAATTG	2 cut(s)	538, 1385
MflI	RGATCY	4 cut(s)	629, 1022, 1956, 2254
MhlI	GDGCHC	5 cut(s)	706, 900, 1619, 2040, 3316
MlsI	TGGCCA	1 cut(s)	924
MluNI	TGGCCA	1 cut(s)	924
MlyI	GAGTC	5 cut(s)	101, 541, 844, 2282, 3129
MmeI	TCCRAC	9 cut(s)	641, 668, 725, 742, 1325, 1977, 2158, 2890, 3088
Mox20I	TGGCCA	1 cut(s)	924
Mph1103I	ATGCAT	1 cut(s)	960
MroXI	GAANNNNTTC	3 cut(s)	72, 1515, 1790
MscI	TGGCCA	1 cut(s)	924
MslI	CAYNNNNRTG	4 cut(s)	185, 1344, 1622, 2443
Msp20I	TGGCCA	1 cut(s)	924
MspA1I	CMGCKG	6 cut(s)	827, 887, 2141, 2501, 2888, 3186
MspCI	CTTAAG	2 cut(s)	302, 3130
MspI	CCGG	1 cut(s)	1120
MspR9I	CCNGG	9 cut(s)	741, 801, 1120, 1121, 1605, 1648, 2114, 2339, 3388
MunI	CAATTG	2 cut(s)	538, 1385
Mva1269I	GAATGC	1 cut(s)	1364
MvaI	CCWGG	7 cut(s)	741, 801, 1605, 1648, 2114, 2339, 3388
MvnI	CGCG	1 cut(s)	474
NciI	CCSGG	2 cut(s)	1120, 1121
NcoI	CCATGG	1 cut(s)	706
NdeI	CATATG	1 cut(s)	2428
NdeII	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
NlaIV	GGNNCC	9 cut(s)	703, 1117, 1118, 1236, 1645, 1787, 2077, 2256, 3315
NmuCI	GTSAC	3 cut(s)	1091, 1917, 3095
NruI	TCGCGA	1 cut(s)	474
NsiI	ATGCAT	1 cut(s)	960
NspI	RCATGY	1 cut(s)	3275
NspV	TTCGAA	1 cut(s)	1268
OliI	CACNNNNGTG	2 cut(s)	185, 2443
PagI	TCATGA	3 cut(s)	2469, 2604, 2962
PaqCI	CACCTGC	1 cut(s)	1430
PceI	AGGCCT	1 cut(s)	2772
PciSI	GCTCTTC	1 cut(s)	1658
PctI	GAATGC	1 cut(s)	1364
PdmI	GAANNNNTTC	3 cut(s)	72, 1515, 1790
PflFI	GACNNNGTC	1 cut(s)	1763
PflMI	CCANNNNNTGG	3 cut(s)	680, 740, 1693
PfoI	TCCNGGA	1 cut(s)	1603
PleI	GAGTC	5 cut(s)	100, 540, 844, 2282, 3129
PpsI	GAGTC	5 cut(s)	100, 540, 844, 2282, 3129
Ppu21I	YACGTR	1 cut(s)	1401
PpuMI	RGGWCCY	2 cut(s)	298, 1116
PshAI	GACNNNNGTC	1 cut(s)	1098
Psp5II	RGGWCCY	2 cut(s)	298, 1116
Psp6I	CCWGG	7 cut(s)	739, 799, 1603, 1646, 2112, 2337, 3386
PspGI	CCWGG	7 cut(s)	739, 799, 1603, 1646, 2112, 2337, 3386
PspN4I	GGNNCC	9 cut(s)	703, 1117, 1118, 1236, 1645, 1787, 2077, 2256, 3315
PspPI	GGNCC	7 cut(s)	298, 665, 710, 1116, 1235, 2075, 3332
PspPPI	RGGWCCY	2 cut(s)	298, 1116
PstI	CTGCAG	1 cut(s)	1441
PstNI	CAGNNNCTG	1 cut(s)	2816
PsuI	RGATCY	4 cut(s)	629, 1022, 1956, 2254
PsyI	GACNNNGTC	1 cut(s)	1763
PvuII	CAGCTG	5 cut(s)	827, 887, 2141, 2501, 2888
RruI	TCGCGA	1 cut(s)	474
RsaI	GTAC	5 cut(s)	1009, 1134, 2164, 2324, 2799
RsaNI	GTAC	5 cut(s)	1008, 1133, 2163, 2323, 2798
RseI	CAYNNNNRTG	4 cut(s)	185, 1344, 1622, 2443
SapI	GCTCTTC	1 cut(s)	1658
Sau3AI	GATC	9 cut(s)	127, 342, 601, 629, 1022, 1580, 1956, 2254, 2938
Sau96I	GGNCC	7 cut(s)	298, 665, 710, 1116, 1235, 2075, 3332
SchI	GAGTC	5 cut(s)	101, 541, 844, 2282, 3129
ScrFI	CCNGG	9 cut(s)	741, 801, 1120, 1121, 1605, 1648, 2114, 2339, 3388
SduI	GDGCHC	5 cut(s)	706, 900, 1619, 2040, 3316
SfcI	CTRYAG	2 cut(s)	855, 1437
SfuI	TTCGAA	1 cut(s)	1268
SinI	GGWCC	3 cut(s)	298, 665, 1116
SmaI	CCCGGG	1 cut(s)	1121
SmiMI	CAYNNNNRTG	4 cut(s)	185, 1344, 1622, 2443
SmlI	CTYRAG	6 cut(s)	83, 302, 2658, 3046, 3130, 3321
SmoI	CTYRAG	6 cut(s)	83, 302, 2658, 3046, 3130, 3321
SseBI	AGGCCT	1 cut(s)	2772
SsiI	CCGC	7 cut(s)	1662, 1875, 2252, 2631, 3036, 3186, 3309
SspI	AATATT	2 cut(s)	424, 1516
SspMI	CTAG	7 cut(s)	753, 819, 1073, 1887, 1893, 2072, 3360
StuI	AGGCCT	1 cut(s)	2772
StyD4I	CCNGG	9 cut(s)	739, 799, 1118, 1119, 1603, 1646, 2112, 2337, 3386
StyI	CCWWGG	2 cut(s)	706, 845
TaaI	ACNGT	8 cut(s)	73, 653, 1923, 1946, 2442, 3101, 3285, 3318
TaiI	ACGT	6 cut(s)	511, 521, 1403, 1764, 2122, 2597
TaqI	TCGA	3 cut(s)	1268, 2023, 3145
TatI	WGTACW	2 cut(s)	2322, 2797
TauI	GCSGC	2 cut(s)	3038, 3189
TscAI	CASTG	5 cut(s)	925, 1221, 1926, 1951, 3273
TseFI	GTSAC	3 cut(s)	1091, 1917, 3095
Tsp45I	GTSAC	3 cut(s)	1091, 1917, 3095
TspGWI	ACGGA	3 cut(s)	529, 1741, 3213
TspMI	CCCGGG	1 cut(s)	1119
TspRI	CASTG	5 cut(s)	925, 1221, 1926, 1951, 3273
Tth111I	GACNNNGTC	1 cut(s)	1763
Van91I	CCANNNNNTGG	3 cut(s)	680, 740, 1693
Vha464I	CTTAAG	2 cut(s)	302, 3130
VneI	GTGCAC	1 cut(s)	1615
VpaK11BI	GGWCC	3 cut(s)	298, 665, 1116
XagI	CCTNNNNNAGG	1 cut(s)	992
XapI	RAATTY	2 cut(s)	1811, 2238
XceI	RCATGY	1 cut(s)	3275
XcmI	CCANNNNNNNNNTGG	2 cut(s)	741, 3202
XmaI	CCCGGG	1 cut(s)	1119
XmiI	GTMKAC	2 cut(s)	511, 972
XmnI	GAANNNNTTC	3 cut(s)	72, 1515, 1790
XspI	CTAG	7 cut(s)	753, 819, 1073, 1887, 1893, 2072, 3360
Zsp2I	ATGCAT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.