Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Forward (+)

956764 .. 958953

Gene Structure 2190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTACACCAATGATGGCTTGGCTCTGTTAGCGCTGGCCTCCAATGCTGTTCACAAGATTTGGAAATGGCAGCGTGATGGCAGGAATAATCCATCAGGAAAGGCTAGTGCATATGTTGTTCCACAGTTGTGGCAGCCTCGGAATGGAATTCTTATGGCTAATGATGTAAATGACAATAAGACTGCTGAGGAATATACTGCATGCATTGCTGTATATAAAAATGGTTCTTACATGATGTCTGCATCTGGCGGTAAGGTCTCTTTGTTCAACATGATGACATTTAAGGTCGAAACCAAACTGAAGGGTCACCGGAATCGGATAACAGGCCTTGCGTTTTCCCAAACTCTTAACATACTGGTTTCTTCAGGAGCTGATGCCCAGTTATGTGTGTGGAGCACTGATGGGTGGGAGAAAAAGAAAACAAGGTTCATACAAGCACCAACTGGTTGGCAATCCCCATTGGTTGGAGAAACAAAAGTTCAGTTTCATAACGATCACACACATCTCAAGCTTGATTTTTTTTTTTTTTTTTTTTATGATTGTGCAATCACACGGTGTCCTCAAATTGCTGTGTATGACAGCAAGCTTGATTGTTTACACTCTCCAAATGCACTTGCTGCTCCCATCTCATGTGCAATATATTCATGCGATGGTTTGTTGGTTTATGCTACTTTTTGTGACGGTGCTGTGGGAGTTTTTGATGCTAATAGCTTAAGATTCAGATGTCGAAAAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGCGGTGGCAAATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGACGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAGCTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCTTTCCAATTCATCAAATCATTCTCTTAGTAGTCAAGCATCAGAACTTCCTTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

315

Amino Acids

34.36

Weight (kDa)

8.31

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	22 - 141	4.7e-08	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	43 - 132	1.3e-10	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	51 - 141	6.5e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2	PF23414	56 - 143	8.2e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	59 - 137	9.1e-07	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	65 - 237	1.3e-08	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	68 - 134	2.3e-08	WDR5 beta-propeller domain
WD40_Prp19	PF24814	68 - 237	1.3e-07	Prp19 WD40 domain
WD40	PF00400	97 - 132	8.2e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	814
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	2 cut(s)	249, 768
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	3 cut(s)	320, 348, 872
AdeI	CACNNNGTG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	143, 464
AflII	CTTAAG	1 cut(s)	712
AgsI	TTSAA	2 cut(s)	268, 833
AjnI	CCWGG	1 cut(s)	938
AleI	CACNNNNGTG	1 cut(s)	127
AluBI	AGCT	5 cut(s)	371, 511, 586, 711, 850
AluI	AGCT	5 cut(s)	371, 511, 586, 711, 850
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	371
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	2 cut(s)	36, 325
ApeKI	GCWGC	3 cut(s)	70, 133, 617
ApoI	RAATTY	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	34, 736
AsuHPI	GGTGA	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	82, 145, 604
BccI	CCATC	8 cut(s)	8, 71, 100, 395, 632, 644, 760, 844
BciT130I	CCWGG	1 cut(s)	940
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	2 cut(s)	35, 737
BfrI	CTTAAG	1 cut(s)	712
BisI	GCNGC	3 cut(s)	71, 134, 618
BlsI	GCNGC	3 cut(s)	72, 135, 619
Bme1390I	CCNGG	1 cut(s)	940
BmrFI	CCNGG	1 cut(s)	940
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	5 cut(s)	251, 364, 691, 832, 932
BmuI	ACTGGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	2 cut(s)	491, 858
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 464
Bse1I	ACTGG	3 cut(s)	360, 379, 448
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	940
BseDI	CCNNGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	143, 464
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	177, 771, 778
BseNI	ACTGG	3 cut(s)	360, 379, 448
BseXI	GCAGC	3 cut(s)	82, 145, 604
BshFI	GGCC	2 cut(s)	38, 327
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	143, 464
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	38, 327
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	2 cut(s)	249, 768
BspANI	GGCC	2 cut(s)	38, 327
BspCNI	CTCAG	3 cut(s)	178, 772, 777
BspTI	CTTAAG	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	360, 379, 448
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	940
Bst4CI	ACNGT	3 cut(s)	126, 555, 683
BstAFI	CTTAAG	1 cut(s)	712
BstAPI	GCANNNNNTGC	2 cut(s)	206, 617
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	36, 202, 584
BstDEI	CTNAG	4 cut(s)	186, 764, 780, 911
BstEII	GGTNACC	1 cut(s)	305
BstH2I	RGCGCY	2 cut(s)	35, 737
BstHHI	GCGC	2 cut(s)	34, 736
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 617, 740
BstNI	CCWGG	1 cut(s)	940
BstNSI	RCATGY	2 cut(s)	204, 827
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	938
BstV1I	GCAGC	3 cut(s)	82, 145, 604
BstXI	CCANNNNNNTGG	2 cut(s)	129, 447
BsuRI	GGCC	2 cut(s)	38, 327
BtgZI	GCGATG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	396, 825
Cac8I	GCNNGC	3 cut(s)	36, 202, 584
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	2 cut(s)	34, 736
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	7 cut(s)	201, 232, 271, 630, 645, 805, 824
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	186, 764, 780, 911
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
DraIII	CACNNNGTG	1 cut(s)	555
DrdI	GACNNNNNNGTC	1 cut(s)	814
DseDI	GACNNNNNNGTC	1 cut(s)	814
Eco147I	AGGCCT	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	262
Eco47III	AGCGCT	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	320, 348, 872
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	938
EcoT22I	ATGCAT	1 cut(s)	206
FaeI	CATG	7 cut(s)	204, 235, 274, 633, 648, 808, 827
FatI	CATG	7 cut(s)	200, 231, 270, 629, 644, 804, 823
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	71, 134, 618
Fsp4HI	GCNGC	3 cut(s)	71, 134, 618
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	2 cut(s)	33, 735
GluI	GCNGC	3 cut(s)	71, 134, 618
HaeII	RGCGCY	2 cut(s)	35, 737
HaeIII	GGCC	2 cut(s)	38, 327
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	2 cut(s)	34, 736
Hin1II	CATG	7 cut(s)	204, 235, 274, 633, 648, 808, 827
Hin6I	GCGC	2 cut(s)	32, 734
HinP1I	GCGC	2 cut(s)	32, 734
HindIII	AAGCTT	2 cut(s)	509, 584
HinfI	GANTC	2 cut(s)	313, 717
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	3 cut(s)	6, 52, 596
Hpy188I	TCNGA	6 cut(s)	141, 318, 722, 781, 841, 928
Hpy188III	TCNNGA	3 cut(s)	96, 366, 875
Hpy8I	GTNNAC	3 cut(s)	6, 52, 596
HpyAV	CCTTC	3 cut(s)	295, 747, 945
HpyCH4III	ACNGT	3 cut(s)	126, 555, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 617, 740
HpyF3I	CTNAG	4 cut(s)	186, 764, 780, 911
Hsp92II	CATG	7 cut(s)	204, 235, 274, 633, 648, 808, 827
HspAI	GCGC	2 cut(s)	32, 734
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	3 cut(s)	368, 393, 625
Lsp1109I	GCAGC	3 cut(s)	82, 145, 604
LweI	GCATC	5 cut(s)	251, 364, 691, 832, 932
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	305, 677
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	3 cut(s)	147, 564, 892
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	5 cut(s)	49, 147, 181, 570, 880
Mph1103I	ATGCAT	1 cut(s)	206
MseI	TTAA	3 cut(s)	282, 348, 713
MslI	CAYNNNNRTG	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	768
MspCI	CTTAAG	1 cut(s)	712
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	940
MvaI	CCWGG	1 cut(s)	940
MwoI	GCNNNNNNNGC	5 cut(s)	29, 44, 206, 617, 740
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	7 cut(s)	204, 235, 274, 633, 648, 808, 827
NmuCI	GTSAC	2 cut(s)	305, 677
NsiI	ATGCAT	1 cut(s)	206
NspI	RCATGY	2 cut(s)	204, 827
OliI	CACNNNNGTG	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	313, 717
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	72, 135, 619
Psp6I	CCWGG	1 cut(s)	938
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	938
PstNI	CAGNNNCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	282, 348, 713
SatI	GCNGC	3 cut(s)	71, 134, 618
Sau3AI	GATC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	940
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	9 cut(s)	258, 288, 373, 428, 513, 588, 713, 852, 944
SfaNI	GCATC	5 cut(s)	251, 364, 691, 832, 932
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	3 cut(s)	506, 712, 873
SmoI	CTYRAG	3 cut(s)	506, 712, 873
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	3 cut(s)	147, 564, 892
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	2 cut(s)	249, 768
SspMI	CTAG	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	938
TaaI	ACNGT	3 cut(s)	126, 555, 683
TaqI	TCGA	2 cut(s)	288, 727
TasI	AATT	3 cut(s)	147, 564, 892
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	313, 717
Tru1I	TTAA	3 cut(s)	282, 348, 713
Tru9I	TTAA	3 cut(s)	282, 348, 713
TscAI	CASTG	2 cut(s)	403, 825
TseFI	GTSAC	2 cut(s)	305, 677
TseI	GCWGC	3 cut(s)	70, 133, 617
Tsp45I	GTSAC	2 cut(s)	305, 677
TspDTI	ATGAA	4 cut(s)	418, 476, 633, 885
TspRI	CASTG	2 cut(s)	403, 825
Van91I	CCANNNNNTGG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	712
XapI	RAATTY	1 cut(s)	147
XceI	RCATGY	2 cut(s)	204, 827
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 797
XspI	CTAG	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.