Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Reverse (-)

65644279 .. 65652038

Gene Structure 7760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG447900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATAAAAGCCAGCCCGCCGCCGATCGAGGAGGGGTTCAACTTGCTGACAGAGAACGTGAAGAATGTGGAGAAGCTAGCCGGAAAAGGAGTGGAGCGTTGCTTGAAGCGGACGGGCTTCGAGTATAGCACTCTGCAGGCGCCAGAGTTGGGGACGGCAAGGTCGCGAGTGAGACGCACGCTGCCATTGTTCAAGTGGGCGTCGCTGAGGAGCTTGAGGCTGCTGAGGCTTGAAATTAACGCTGGTTTACGCTTGATAAGGATGTTTGAGGGCAAAGCTTTGAAGAGAAACCGAGGCACTACTGAGCCCATCAACACCAAGCATTTGATTGGCTATGCAGTTGTAGGCCCCATTGGGAATGTTTCTAACACTGTTGCTTCAACCCTGGAACGCGCTGATAGAATCCAACCTGCTGTTTCTGTCAGTAATGTGGGTAATATGGAGAACAGCGGGCTTGTTGATGTTAAACCATGGATCCCTGATGTTATAGACAAGATTAAGAGATGGAAAGTTTCTGATATTGCGGATCCTTCTCAAATGAAAGCTTTAAGATTGCCCGACTCTAAAACAGCTGGAAAGGTTGTGAGACTAATGCATGTACACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

202

Amino Acids

22.48

Weight (kDa)

10.37

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	139
AccII	CGCG	2 cut(s)	166, 393
AciI	CCGC	5 cut(s)	17, 20, 109, 450, 524
AclWI	GGATC	4 cut(s)	469, 482, 521, 534
AcyI	GRCGYC	2 cut(s)	140, 200
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	6 cut(s)	40, 106, 193, 233, 283, 381
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	5 cut(s)	76, 213, 278, 545, 572
AluI	AGCT	5 cut(s)	76, 213, 278, 545, 572
Alw26I	GTCTC	2 cut(s)	166, 580
AlwI	GGATC	4 cut(s)	469, 482, 521, 534
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	181, 220
AspLEI	GCGC	2 cut(s)	142, 395
AspS9I	GGNCC	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	76
BamHI	GGATCC	2 cut(s)	474, 526
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	309
BbvCI	CCTCAGC	2 cut(s)	206, 224
BbvI	GCAGC	2 cut(s)	168, 207
BccI	CCATC	2 cut(s)	317, 498
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	166, 580
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	3 cut(s)	20, 182, 221
BlsI	GCNGC	3 cut(s)	21, 183, 222
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	4 cut(s)	141, 349, 476, 528
BmrFI	CCNGG	1 cut(s)	386
BmtI	GCTAGC	1 cut(s)	80
Bpu10I	CCTNAGC	2 cut(s)	206, 224
BpuEI	CTTGAG	1 cut(s)	235
BsaHI	GRCGYC	2 cut(s)	140, 200
BsaJI	CCNNGG	3 cut(s)	292, 384, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	3 cut(s)	292, 384, 470
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	3 cut(s)	197, 215, 294
BseRI	GAGGAG	2 cut(s)	44, 223
BseXI	GCAGC	2 cut(s)	168, 207
Bsh1236I	CGCG	2 cut(s)	166, 393
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	166, 580
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	24, 474, 526
Bsp19I	CCATGG	1 cut(s)	470
Bsp68I	TCGCGA	1 cut(s)	166
BspACI	CCGC	5 cut(s)	17, 20, 109, 450, 524
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	3 cut(s)	198, 216, 295
BspFNI	CGCG	2 cut(s)	166, 393
BspLI	GGNNCC	4 cut(s)	141, 349, 476, 528
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	418
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	4 cut(s)	469, 482, 521, 534
BspT107I	GGYRCC	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	598
BssECI	CCNNGG	3 cut(s)	292, 384, 470
BssMI	GATC	3 cut(s)	24, 474, 526
BssNI	GRCGYC	2 cut(s)	140, 200
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	2 cut(s)	140, 200
BstAUI	TGTACA	1 cut(s)	598
BstC8I	GCNNGC	6 cut(s)	13, 17, 78, 138, 179, 452
BstDEI	CTNAG	3 cut(s)	206, 224, 303
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	2 cut(s)	166, 393
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 395
BstKTI	GATC	3 cut(s)	27, 477, 529
BstMAI	GTCTC	2 cut(s)	166, 580
BstMBI	GATC	3 cut(s)	24, 474, 526
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	2 cut(s)	166, 393
BstV1I	GCAGC	2 cut(s)	168, 207
BstX2I	RGATCY	2 cut(s)	474, 526
BstYI	RGATCY	2 cut(s)	474, 526
BsuRI	GGCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	369
BtuMI	TCGCGA	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	6 cut(s)	13, 17, 78, 138, 179, 452
CfoI	GCGC	2 cut(s)	142, 395
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	2 cut(s)	183, 189
Csp6I	GTAC	1 cut(s)	599
CviAII	CATG	2 cut(s)	471, 596
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	3 cut(s)	206, 224, 303
DinI	GGCGCC	1 cut(s)	141
DpnI	GATC	3 cut(s)	26, 476, 528
DpnII	GATC	3 cut(s)	24, 474, 526
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	474, 599
FaiI	YATR	6 cut(s)	126, 336, 440, 472, 488, 597
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	470, 595
FauI	CCCGC	2 cut(s)	24, 443
Fnu4HI	GCNGC	3 cut(s)	20, 182, 221
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	20, 182, 221
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	2 cut(s)	141, 394
GluI	GCNGC	3 cut(s)	20, 182, 221
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	2 cut(s)	183, 189
HhaI	GCGC	2 cut(s)	142, 395
Hin1I	GRCGYC	2 cut(s)	140, 200
Hin1II	CATG	2 cut(s)	474, 599
Hin6I	GCGC	2 cut(s)	140, 393
HinP1I	GCGC	2 cut(s)	140, 393
HindIII	AAGCTT	2 cut(s)	276, 543
HinfI	GANTC	2 cut(s)	402, 560
HpaII	CCGG	1 cut(s)	81
Hpy166II	GTNNAC	2 cut(s)	248, 601
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	2 cut(s)	248, 601
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	540
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	136, 338, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	3 cut(s)	206, 224, 303
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	2 cut(s)	140, 200
Hsp92II	CATG	2 cut(s)	474, 599
HspAI	GCGC	2 cut(s)	140, 393
KasI	GGCGCC	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	24, 474, 526
LmnI	GCTCC	2 cut(s)	94, 210
Lsp1109I	GCAGC	2 cut(s)	168, 207
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	57
MalI	GATC	3 cut(s)	26, 476, 528
MboI	GATC	3 cut(s)	24, 474, 526
MboII	GAAGA	2 cut(s)	73, 295
MflI	RGATCY	2 cut(s)	474, 526
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	1 cut(s)	234
Mly113I	GGCGCC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	7 cut(s)	22, 25, 201, 210, 219, 262, 287
Mph1103I	ATGCAT	1 cut(s)	597
MseI	TTAA	4 cut(s)	237, 465, 498, 548
MspA1I	CMGCKG	2 cut(s)	450, 572
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	2 cut(s)	166, 393
MwoI	GCNNNNNNNGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	470
NdeII	GATC	3 cut(s)	24, 474, 526
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	474, 599
NlaIV	GGNNCC	4 cut(s)	141, 349, 476, 528
NruI	TCGCGA	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	21, 183, 222
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	1 cut(s)	554
PluTI	GGCGCC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	4 cut(s)	141, 349, 476, 528
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	474, 526
PvuI	CGATCG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	572
RruI	TCGCGA	1 cut(s)	166
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
SaqAI	TTAA	4 cut(s)	237, 465, 498, 548
SatI	GCNGC	3 cut(s)	20, 182, 221
Sau3AI	GATC	3 cut(s)	24, 474, 526
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	9 cut(s)	60, 78, 164, 215, 280, 412, 547, 574, 582
SfcI	CTRYAG	1 cut(s)	134
SfoI	GGCGCC	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	5 cut(s)	17, 20, 109, 450, 524
SspDI	GGCGCC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	27, 120
TasI	AATT	1 cut(s)	234
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	4 cut(s)	237, 465, 498, 548
Tru9I	TTAA	4 cut(s)	237, 465, 498, 548
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	181, 220
TspDTI	ATGAA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	376
XceI	RCATGY	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.