Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Reverse (-)

67757473 .. 67757865

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG459600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTGGGCTCGCGAATATATCTATGACGACGATGTTGGACCTCCTCTCTATGCAGCTCCTATGTTTTGTCTTATTTGCAGCAAGTATTTTGAGCACATGACTAAAGACTGCCCTCATTTGCATGATGAGAGTTACAGCGATCGCCGTTGGAGGATTTTTCATGCCCCTCCTGTTTTTAAAACCACTAATGCATTGATAATGCAGATATTCGTCAGGACTCTCCCTGGAAGGATCCTAACCCTTGAGGTTGAAAGCTCTGACACCATTTACAATGTCAAAGCCAAAATCCGAGACAAGGAAGGCATCCCCCCACCGCCCCCAGACCAGCAAAGGCTGCTTTTGAATCGCAAGCTTCTCGAGGAGGGGCACACCCTTGCTGACTACAATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

130

Amino Acids

15.25

Weight (kDa)

6.19

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	67 - 130	3.5e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	69 - 130	1.1e-15	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	226, 239
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	251, 343
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	56, 255, 352
AluI	AGCT	3 cut(s)	56, 255, 352
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	226, 239
Ama87I	CYCGRG	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	53, 78, 334
AsiSI	GCGATCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	65, 90, 321
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	54, 79, 335
BlsI	GCNGC	3 cut(s)	55, 80, 336
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseRI	GAGGAG	2 cut(s)	33, 374
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	3 cut(s)	65, 90, 321
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	10, 96, 369
Bsp143I	GATC	2 cut(s)	139, 231
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	2 cut(s)	226, 239
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	139, 231
Bst2UI	CCWGG	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	10, 350
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	142, 234
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	139, 231
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	65, 90, 321
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	303
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	10, 350
Cfr13I	GGNCC	1 cut(s)	38
CviAII	CATG	3 cut(s)	97, 122, 161
CviJI	RGCY	6 cut(s)	8, 56, 255, 281, 334, 352
CviKI_1	RGCY	6 cut(s)	8, 56, 255, 281, 334, 352
DpnI	GATC	2 cut(s)	141, 233
DpnII	GATC	2 cut(s)	139, 231
DraI	TTTAAA	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	3 cut(s)	100, 125, 164
FaiI	YATR	7 cut(s)	18, 24, 51, 62, 98, 123, 162
FatI	CATG	3 cut(s)	96, 121, 160
Fnu4HI	GCNGC	3 cut(s)	54, 79, 335
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	54, 79, 335
GluI	GCNGC	3 cut(s)	54, 79, 335
Hin1II	CATG	3 cut(s)	100, 125, 164
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	2 cut(s)	217, 343
Hpy188I	TCNGA	2 cut(s)	259, 290
Hpy188III	TCNNGA	3 cut(s)	11, 214, 356
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	222, 293
HpyCH4V	TGCA	5 cut(s)	53, 78, 121, 191, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	100, 125, 164
Kzo9I	GATC	2 cut(s)	139, 231
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	183, 199, 210, 237, 333, 338
Lsp1109I	GCAGC	3 cut(s)	65, 90, 321
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	141, 233
MboI	GATC	2 cut(s)	139, 231
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	3 cut(s)	10, 96, 369
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	16, 128
MnlI	CCTC	8 cut(s)	51, 54, 123, 144, 177, 238, 352, 355
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeII	GATC	2 cut(s)	139, 231
NlaIII	CATG	3 cut(s)	100, 125, 164
NlaIV	GGNNCC	1 cut(s)	233
NruI	TCGCGA	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	193
PaeR7I	CTCGAG	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	55, 80, 336
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	142
RgaI	GCGATCGC	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	3 cut(s)	54, 79, 335
Sau3AI	GATC	2 cut(s)	139, 231
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	3 cut(s)	10, 96, 369
SetI	ASST	5 cut(s)	43, 58, 249, 257, 354
SfaAI	GCGATCGC	1 cut(s)	142
SfaNI	GCATC	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	356
SgfI	GCGATCGC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	242, 356
SmoI	CTYRAG	2 cut(s)	242, 356
SsiI	CCGC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	223
TaqI	TCGA	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	3 cut(s)	53, 78, 334
TspDTI	ATGAA	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	38
XhoI	CTCGAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.