Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Reverse (-)

67332013 .. 67332297

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCGTCTCCTATGTCTTGTCTTATTTGCAGCCAGTATTTTGCGCACATTGACAAAAAACTGCCCTCATTTGCATGATGAGAGTTACAGTGATAGCCGTTGGAAAATTTTTCATGTCCCTCCTGTTTTTAAAACCACTGATGCATTGATAATGCAGATATTCGTCAAGACTCTTATTGGAAAGACCTTAACCCTTGAGGTTTTTAGCTCTGACACCATTTACAATGTCAAAGCCAAAATCCGAGACAAGGAAGGCATCCCCCAAACCAGCAAAGGCTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005700 GO:0005704 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0051603 GO:0070647 GO:0071704 GO:0098687 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

94

Amino Acids

10.73

Weight (kDa)

9.33

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	53 - 88	4.9e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	11, 237
ApeKI	GCWGC	2 cut(s)	29, 276
ApoI	RAATTY	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	41, 263
BceAI	ACGGC	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	11, 237
BisI	GCNGC	2 cut(s)	30, 277
BlsI	GCNGC	2 cut(s)	31, 278
BmsI	GCATC	2 cut(s)	130, 264
BpuEI	CTTGAG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	41, 263
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	11, 237
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	11, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	41, 263
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	94, 135
CfoI	GCGC	1 cut(s)	45
CviAII	CATG	2 cut(s)	74, 113
CviJI	RGCY	5 cut(s)	32, 96, 207, 233, 276
CviKI_1	RGCY	5 cut(s)	32, 96, 207, 233, 276
DraI	TTTAAA	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	77, 116
FaiI	YATR	3 cut(s)	13, 75, 114
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	73, 112
Fnu4HI	GCNGC	2 cut(s)	30, 277
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	30, 277
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	30, 277
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	77, 116
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	211, 242
Hpy188III	TCNNGA	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	29, 73, 143, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	77, 116
HspAI	GCGC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	46, 135, 280
Lsp1109I	GCAGC	2 cut(s)	41, 263
LweI	GCATC	2 cut(s)	130, 264
MaeIII	GTNAC	1 cut(s)	83
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	75, 129, 190
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	2 cut(s)	129, 188
MslI	CAYNNNNRTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	276
NlaIII	CATG	2 cut(s)	77, 116
NsbI	TGCGCA	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	31, 278
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	129, 188
SatI	GCNGC	2 cut(s)	30, 277
SchI	GAGTC	1 cut(s)	163
SetI	ASST	3 cut(s)	188, 201, 209
SfaNI	GCATC	2 cut(s)	130, 264
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	89
TasI	AATT	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	129, 188
Tru9I	TTAA	2 cut(s)	129, 188
TscAI	CASTG	2 cut(s)	94, 142
TseI	GCWGC	2 cut(s)	29, 276
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	94, 142
XapI	RAATTY	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.