Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003885.1

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Forward (+)

33426 .. 33729

Gene Structure 304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003885.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atgtacaccaatgatggcttggctctgttagcgctggcctccaatgctgttcacaagatttggaaatggccgcgggatgacaggaataatattccatcaggaaaggctagtgcatatgttgttccacagttgtggaagcctcggaatggaattcttatggctaatgatgtaaatgacaataagactgctgaggaatatactgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

68

Amino Acids

7.63

Weight (kDa)

8.06

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	71, 73
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	146
AleI	CACNNNNGTG	1 cut(s)	130
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	2 cut(s)	36, 68
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	8, 103
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	71, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	71, 140
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	38, 70
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	2 cut(s)	38, 70
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	2 cut(s)	71, 73
BspANI	GGCC	2 cut(s)	38, 70
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	2 cut(s)	71, 140
Bst4CI	ACNGT	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 44
BstUI	CGCG	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	38, 70
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	34
Cfr42I	CCGCGG	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	7 cut(s)	18, 23, 38, 70, 107, 139, 161
CviKI_1	RGCY	7 cut(s)	18, 23, 38, 70, 107, 139, 161
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	150
FaeI	CATG	1 cut(s)	207
FaiI	YATR	5 cut(s)	115, 117, 158, 198, 205
FatI	CATG	1 cut(s)	203
FauI	CCCGC	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	38, 70
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	6, 52
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	2 cut(s)	6, 52
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	113, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 44
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	207
HspAI	GCGC	1 cut(s)	32
KspI	CCGCGG	1 cut(s)	74
LpnPI	CCDG	3 cut(s)	20, 67, 84
MaeI	CTAG	1 cut(s)	108
MluCI	AATT	1 cut(s)	150
MnlI	CCTC	3 cut(s)	49, 150, 184
MslI	CAYNNNNRTG	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	2 cut(s)	29, 44
NdeI	CATATG	1 cut(s)	115
NlaIII	CATG	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	72
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	74
SatI	GCNGC	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	74
SgeI	CNNG	9 cut(s)	31, 47, 67, 84, 86, 94, 111, 120, 153
SgrBI	CCGCGG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	71, 73
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	129
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.