Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Forward (+)

1000950 .. 1003243

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTACACCAATGATGGCTTGGCTCTGTTAGCGCTGGCCTCCAATGTTGTTCACAAGATTTGGAAATGGCCGCGTGATGACATGAATAATCCATCAGGAAAGGCTAGTGCATATGTTGTTCCACAGTTGTGGCAGGCTGCTGAGGAATATACTGCATGCATTGCTGTATATAAAAATGATTCTTACATGATGTCTGCATCTGGCGGTCGTGACAACATTTGTGTCTCCCCCTCCTCCAGTGCTGCTGCCACTTTTCTGGCATTCCATCCTCAAGATAATAGTCTAATTGCTATTGGCATGGACGACACTACTATTTTAATGTATAGTGTCAGGGTTAATGAGTTATGTGTGTGGAGCACTGATGGGTGGGAGAAAAAGAAAACAAGGTTCATACAAGCACCAACTGGTTGGCAATCCCCATTGGTTGGAGAAACAAAAGTTCAGTTTCATAACGATCACACACATCTGTTGGTTTCCCATGAAAGCCAAATTGCTGTGTATGACAGCAAGCTTGATTGTTTGCAATCTGTAAATGCACTTGCTGCTCCCATCTCATGTGCAATATATTCATGCGATGGTATGTTGGTTTATGCTACTTTTTGTGGCGGTGCTGTGGGAGTTTTTGATGCTAATAGCTTAAGATTCAGATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGCGGTGGCAACCCCTCCTATCCTCTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGACGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAGCTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCCTTCCAATTCATCAAATCCTTCTCCTAGTGGTCAAGCATCAGAACTTCCTTCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

301

Amino Acids

32.23

Weight (kDa)

5.27

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccII	CGCG	1 cut(s)	73
AciI	CCGC	4 cut(s)	71, 204, 606, 693
AcoI	YGGCCR	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	425
AflII	CTTAAG	1 cut(s)	637
AgsI	TTSAA	1 cut(s)	791
AjnI	CCWGG	1 cut(s)	896
AleI	CACNNNNGTG	1 cut(s)	127
AluBI	AGCT	4 cut(s)	511, 636, 728, 808
AluI	AGCT	4 cut(s)	511, 636, 728, 808
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	2 cut(s)	36, 68
ApeKI	GCWGC	5 cut(s)	137, 242, 245, 542, 725
AspLEI	GCGC	2 cut(s)	34, 661
AspS9I	GGNCC	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	5 cut(s)	124, 229, 232, 529, 737
BccI	CCATC	9 cut(s)	8, 100, 273, 356, 557, 569, 685, 742, 802
BciT130I	CCWGG	1 cut(s)	898
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	105, 870
BfoI	RGCGCY	2 cut(s)	35, 662
BfrI	CTTAAG	1 cut(s)	637
BisI	GCNGC	6 cut(s)	71, 138, 243, 246, 543, 726
BlsI	GCNGC	6 cut(s)	72, 139, 244, 247, 544, 727
Bme1390I	CCNGG	1 cut(s)	898
Bme18I	GGWCC	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	842
BmrFI	CCNGG	1 cut(s)	898
BmsI	GCATC	4 cut(s)	206, 616, 790, 890
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	255, 816
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	237, 409
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	898
BseGI	GGATG	2 cut(s)	265, 730
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	132, 703, 729
BseNI	ACTGG	2 cut(s)	237, 409
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	5 cut(s)	124, 229, 232, 529, 737
Bsh1236I	CGCG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	38, 70
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	38, 70
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	4 cut(s)	71, 204, 606, 693
BspANI	GGCC	2 cut(s)	38, 70
BspCNI	CTCAG	3 cut(s)	133, 702, 730
BspFNI	CGCG	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	237, 409
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	898
Bst4CI	ACNGT	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	637
BstAPI	GCANNNNNTGC	2 cut(s)	161, 542
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	36, 135, 157, 509
BstDEI	CTNAG	3 cut(s)	141, 689, 738
BstF5I	GGATG	2 cut(s)	265, 730
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	2 cut(s)	35, 662
BstHHI	GCGC	2 cut(s)	34, 661
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 161, 542, 665
BstNI	CCWGG	1 cut(s)	898
BstNSI	RCATGY	2 cut(s)	159, 785
BstSCI	CCNGG	1 cut(s)	896
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	5 cut(s)	124, 229, 232, 529, 737
BstXI	CCANNNNNNTGG	3 cut(s)	129, 256, 408
BsuRI	GGCC	2 cut(s)	38, 70
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	265, 730
BtsIMutI	CAGTG	3 cut(s)	244, 357, 783
Cac8I	GCNNGC	4 cut(s)	36, 135, 157, 509
CfoI	GCGC	2 cut(s)	34, 661
Cfr13I	GGNCC	1 cut(s)	842
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	9 cut(s)	82, 156, 187, 298, 479, 555, 570, 763, 782
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	141, 689, 738
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	842
Eco47III	AGCGCT	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	896
EcoT22I	ATGCAT	1 cut(s)	161
FaeI	CATG	9 cut(s)	85, 159, 190, 301, 482, 558, 573, 766, 785
FatI	CATG	9 cut(s)	81, 155, 186, 297, 478, 554, 569, 762, 781
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	6 cut(s)	71, 138, 243, 246, 543, 726
FokI	GGATG	2 cut(s)	252, 717
Fsp4HI	GCNGC	6 cut(s)	71, 138, 243, 246, 543, 726
FspBI	CTAG	2 cut(s)	105, 870
GlaI	GCGC	2 cut(s)	33, 660
GluI	GCNGC	6 cut(s)	71, 138, 243, 246, 543, 726
GsuI	CTGGAG	1 cut(s)	220
HaeII	RGCGCY	2 cut(s)	35, 662
HaeIII	GGCC	2 cut(s)	38, 70
HhaI	GCGC	2 cut(s)	34, 661
Hin1II	CATG	9 cut(s)	85, 159, 190, 301, 482, 558, 573, 766, 785
Hin6I	GCGC	2 cut(s)	32, 659
HinP1I	GCGC	2 cut(s)	32, 659
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	2 cut(s)	179, 642
Hpy166II	GTNNAC	2 cut(s)	6, 52
Hpy188I	TCNGA	4 cut(s)	647, 739, 799, 886
Hpy188III	TCNNGA	4 cut(s)	96, 209, 272, 833
Hpy8I	GTNNAC	2 cut(s)	6, 52
HpyAV	CCTTC	4 cut(s)	672, 855, 873, 903
HpyCH4III	ACNGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 161, 542, 665
HpyF3I	CTNAG	3 cut(s)	141, 689, 738
Hsp92II	CATG	9 cut(s)	85, 159, 190, 301, 482, 558, 573, 766, 785
HspAI	GCGC	2 cut(s)	32, 659
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	354, 550
Lsp1109I	GCAGC	5 cut(s)	124, 229, 232, 529, 737
LweI	GCATC	4 cut(s)	206, 616, 790, 890
MaeI	CTAG	2 cut(s)	105, 870
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	3 cut(s)	285, 489, 850
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	8 cut(s)	49, 136, 241, 244, 279, 715, 723, 838
Mph1103I	ATGCAT	1 cut(s)	161
MseI	TTAA	3 cut(s)	317, 336, 638
MslI	CAYNNNNRTG	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	693
MspCI	CTTAAG	1 cut(s)	637
MspR9I	CCNGG	1 cut(s)	898
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	898
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	4 cut(s)	29, 161, 542, 665
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	9 cut(s)	85, 159, 190, 301, 482, 558, 573, 766, 785
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	161
NspI	RCATGY	2 cut(s)	159, 785
OliI	CACNNNNGTG	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	179, 642
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	72, 139, 244, 247, 544, 727
Psp6I	CCWGG	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	896
PspPI	GGNCC	1 cut(s)	842
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	317, 336, 638
SatI	GCNGC	6 cut(s)	71, 138, 243, 246, 543, 726
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	842
ScrFI	CCNGG	1 cut(s)	898
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	6 cut(s)	389, 513, 638, 730, 810, 902
SfaNI	GCATC	4 cut(s)	206, 616, 790, 890
SinI	GGWCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	3 cut(s)	270, 637, 831
SmoI	CTYRAG	3 cut(s)	270, 637, 831
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	285, 489, 850
SsiI	CCGC	4 cut(s)	71, 204, 606, 693
SspMI	CTAG	2 cut(s)	105, 870
StyD4I	CCNGG	1 cut(s)	896
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	652
TasI	AATT	3 cut(s)	285, 489, 850
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	179, 642
Tru1I	TTAA	3 cut(s)	317, 336, 638
Tru9I	TTAA	3 cut(s)	317, 336, 638
TscAI	CASTG	3 cut(s)	244, 364, 783
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	5 cut(s)	137, 242, 245, 542, 725
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	6 cut(s)	98, 379, 437, 495, 558, 843
TspRI	CASTG	3 cut(s)	244, 364, 783
Van91I	CCANNNNNTGG	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	842
XceI	RCATGY	2 cut(s)	159, 785
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 755
XspI	CTAG	2 cut(s)	105, 870
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.