Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Reverse (-)

67332956 .. 67335120

Gene Structure 2165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAAGCTTTAAGATTGCCTGACTCTAAAACAGCTGGAAAGGCTAGTGCATATGTTGTTCCACAGTTGTGGCAGCCTCGGAATGGAATTCTTATGGCTAATGATGTAAATGACAATAAGACTGCTGAGGAATATACTGCATGCATTGCTGTATATAAAAATGGTTCTTACATGATGTCTGCATCTGGCGGTAAAGTCTCTTTGTTCAACATGATGACATTTAAGGTCGAAACCAAACTGAAGGGTCACCGGAATCGGATAACGGGCCTTGCGTTTTCCCAAACTCTTAACATACTGGTTTGTTCAGGAGCTGATGCCCAGTTATGTGTGTGGAGCATTTTTGGGTGGGAGAAAAAGAAAACAAGGTTAATACAAGCACCAACTGGTCGGCAATCCCCATTGGTTGGAGAAACAAAAATTCAGTTTCATAACGATCACACACAATTGTTGGTTGCCCATGAAAGCCAAATTGCTGTGTATGACAGCAAGCTTGATTGTTTACGCTCTTGGACTCCCAAAGATGCACTTGCTGCTCCCATCTCATGGGCAATATATTCATGCGATGGTTTGTTGGTTTATGCTACTTTTTGTGACGGTGTTGTGGTTTATTCTACTCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

207

Amino Acids

22.85

Weight (kDa)

8.93

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	23 - 115	7.4e-11	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	31 - 129	6.7e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	41 - 114	5.6e-06	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	42 - 119	1.6e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	44 - 199	4.7e-10	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	45 - 202	3e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	48 - 192	5.7e-07	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	404, 543
AciI	CCGC	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	87, 417
AcuI	CTGAAG	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	83, 404, 543
AgsI	TTSAA	1 cut(s)	208
AleI	CACNNNNGTG	1 cut(s)	67
AluBI	AGCT	4 cut(s)	8, 35, 311, 490
AluI	AGCT	4 cut(s)	8, 35, 311, 490
Alw26I	GTCTC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	73, 530
ApoI	RAATTY	2 cut(s)	87, 417
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	85, 517
BccI	CCATC	2 cut(s)	545, 557
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	74, 531
BlsI	GCNGC	2 cut(s)	75, 532
BmgT120I	GGNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	3 cut(s)	191, 304, 511
BmuI	ACTGGG	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 404, 543
Bse1I	ACTGG	3 cut(s)	300, 319, 388
Bse3DI	GCAATG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	3 cut(s)	83, 404, 543
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	3 cut(s)	300, 319, 388
BseXI	GCAGC	2 cut(s)	85, 517
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	83, 404, 543
BsmAI	GTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	3 cut(s)	300, 319, 388
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	66, 596
BstAPI	GCANNNNNTGC	2 cut(s)	146, 530
BstC8I	GCNNGC	2 cut(s)	142, 488
BstDEI	CTNAG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 146, 530
BstNSI	RCATGY	1 cut(s)	144
BstPI	GGTNACC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	85, 517
BstXI	CCANNNNNNTGG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	576
Cac8I	GCNNGC	2 cut(s)	142, 488
CaiI	CAGNNNCTG	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	6 cut(s)	141, 172, 211, 458, 543, 558
CviJI	RGCY	9 cut(s)	8, 35, 44, 76, 98, 267, 311, 465, 490
CviKI_1	RGCY	9 cut(s)	8, 35, 44, 76, 98, 267, 311, 465, 490
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	146
FaeI	CATG	6 cut(s)	144, 175, 214, 461, 546, 561
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	6 cut(s)	140, 171, 210, 457, 542, 557
FauNDI	CATATG	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	74, 531
Fsp4HI	GCNGC	2 cut(s)	74, 531
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	74, 531
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	6 cut(s)	144, 175, 214, 461, 546, 561
HindIII	AAGCTT	2 cut(s)	6, 488
HinfI	GANTC	3 cut(s)	23, 253, 511
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	81, 258
Hpy188III	TCNNGA	1 cut(s)	306
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	66, 596
HpyCH4V	TGCA	5 cut(s)	50, 140, 144, 182, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 146, 530
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	6 cut(s)	144, 175, 214, 461, 546, 561
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	3 cut(s)	308, 333, 538
LpnPI	CCDG	8 cut(s)	21, 33, 171, 263, 281, 291, 332, 369
Lsp1109I	GCAGC	2 cut(s)	85, 517
LweI	GCATC	3 cut(s)	191, 304, 511
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	245, 590
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MfeI	CAATTG	1 cut(s)	443
MluCI	AATT	4 cut(s)	87, 417, 443, 468
MlyI	GAGTC	2 cut(s)	17, 505
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	2 cut(s)	87, 121
Mph1103I	ATGCAT	1 cut(s)	146
MseI	TTAA	4 cut(s)	11, 222, 288, 368
MslI	CAYNNNNRTG	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	443
MwoI	GCNNNNNNNGC	3 cut(s)	41, 146, 530
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	6 cut(s)	144, 175, 214, 461, 546, 561
NmuCI	GTSAC	2 cut(s)	245, 590
NsiI	ATGCAT	1 cut(s)	146
NspI	RCATGY	1 cut(s)	144
OliI	CACNNNNGTG	1 cut(s)	67
PaeI	GCATGC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	404, 543
PkrI	GCNGC	2 cut(s)	75, 532
PleI	GAGTC	2 cut(s)	17, 505
PpsI	GAGTC	2 cut(s)	17, 505
PspEI	GGTNACC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	11, 222, 288, 368
SatI	GCNGC	2 cut(s)	74, 531
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	17, 505
SetI	ASST	6 cut(s)	10, 37, 228, 313, 368, 492
SfaNI	GCATC	3 cut(s)	191, 304, 511
SmiMI	CAYNNNNRTG	1 cut(s)	67
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	4 cut(s)	87, 417, 443, 468
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	66, 596
TaqI	TCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	87, 417, 443, 468
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	4 cut(s)	11, 222, 288, 368
Tru9I	TTAA	4 cut(s)	11, 222, 288, 368
TseFI	GTSAC	2 cut(s)	245, 590
TseI	GCWGC	2 cut(s)	73, 530
Tsp45I	GTSAC	2 cut(s)	245, 590
TspDTI	ATGAA	4 cut(s)	17, 416, 474, 546
Van91I	CCANNNNNTGG	2 cut(s)	404, 543
XapI	RAATTY	2 cut(s)	87, 417
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.