Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

44333020 .. 44333931

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1186900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTATTCAGGCAGCTAGCAAAGCATATGTTTGGCGCTTCAAAAGTAGCAGCTACAGCGAGCACGAAAAAACTCGATCCTTTGAGAAGCTTGGGTGCTGATTTGGCTATTGATTACACCAAGGAGAACTTCGAAGACCTGCCCGAGAAATTCGATGTGGTTTATGATGCAGTTGGGCAGAGTGACAGGGCATTGAAGGCGGTGAAGGAAGGCGGGAAGGTTGTGACAATCGTAGGTCCAGTAACGCCACCGGCAATCATATTTATACTGACTTCAACCGGAACTATATTAGAGAAACTGAAGCCTTACTTGGAGAGTGGGAAGGTGAAGCCGGTGCTTGATCCCACAGGCCCGTATCCATTTTCGAAGACTGTTGAAGCATTTGCCTATCTTGAAACCTCCAGAGCTGCCGGAAAGGTGGTTGTGTATCCCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

147

Amino Acids

15.77

Weight (kDa)

9.02

Isoelectric Point (pI)

21.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	5 - 79	3e-11	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	31 - 142	5.6e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AciI	CCGC	2 cut(s)	200, 213
AclWI	GGATC	2 cut(s)	71, 335
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	320
AgsI	TTSAA	5 cut(s)	42, 196, 276, 377, 395
AjuI	GAANNNNNNNTTGG	4 cut(s)	113, 145, 293, 325
AluBI	AGCT	4 cut(s)	16, 53, 90, 407
AluI	AGCT	4 cut(s)	16, 53, 90, 407
Alw21I	GWGCWC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	71, 335
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	13, 50, 407
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	236, 350
AsuHPI	GGTGA	2 cut(s)	214, 337
AsuII	TTCGAA	2 cut(s)	132, 365
AsuNHI	GCTAGC	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	141, 374
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	25, 62, 394
BccI	CCATC	1 cut(s)	440
BciVI	GTATCC	2 cut(s)	366, 438
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	147
BfuI	GTATCC	2 cut(s)	366, 438
BisI	GCNGC	3 cut(s)	14, 51, 408
BlsI	GCNGC	3 cut(s)	15, 52, 409
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	236, 350
BmsI	GCATC	1 cut(s)	157
BmtI	GCTAGC	1 cut(s)	20
BpiI	GAAGAC	2 cut(s)	141, 374
BpmI	CTGGAG	1 cut(s)	385
Bpu14I	TTCGAA	2 cut(s)	132, 365
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	278
Bse118I	RCCGGY	2 cut(s)	250, 331
Bse1I	ACTGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	25, 62, 394
BshFI	GGCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	4 cut(s)	251, 279, 332, 411
BsnI	GGCC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	2 cut(s)	132, 365
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	76, 340
BspACI	CCGC	2 cut(s)	200, 213
BspANI	GGCC	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	147
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	71, 335
BspT104I	TTCGAA	2 cut(s)	132, 365
BsrFI	RCCGGY	2 cut(s)	250, 331
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	2 cut(s)	250, 331
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	76, 340
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	373
BstBI	TTCGAA	2 cut(s)	132, 365
BstC8I	GCNNGC	2 cut(s)	18, 61
BstF5I	GGATG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	79, 343
BstMBI	GATC	2 cut(s)	76, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 56, 104, 197
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	25, 62, 394
BstV2I	GAAGAC	2 cut(s)	141, 374
BsuI	GTATCC	2 cut(s)	366, 438
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	18, 61
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	2 cut(s)	250, 331
Cfr13I	GGNCC	2 cut(s)	236, 350
CviAII	CATG	1 cut(s)	438
CviJI	RGCY	8 cut(s)	16, 53, 90, 107, 304, 331, 351, 407
CviKI_1	RGCY	8 cut(s)	16, 53, 90, 107, 304, 331, 351, 407
DpnI	GATC	2 cut(s)	78, 342
DpnII	GATC	2 cut(s)	76, 340
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	441
FaiI	YATR	7 cut(s)	27, 29, 165, 260, 266, 287, 439
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 293, 325
FatI	CATG	1 cut(s)	437
FauI	CCCGC	1 cut(s)	206
FauNDI	CATATG	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	14, 51, 408
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	14, 51, 408
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	3 cut(s)	14, 51, 408
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	4 cut(s)	251, 279, 332, 411
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	441
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	88
HpaII	CCGG	4 cut(s)	251, 279, 332, 411
HphI	GGTGA	2 cut(s)	214, 337
Hpy188III	TCNNGA	2 cut(s)	392, 402
HpyAV	CCTTC	5 cut(s)	190, 199, 203, 211, 316
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 56, 104, 197
Hsp92II	CATG	1 cut(s)	441
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	76, 340
LpnPI	CCDG	9 cut(s)	152, 172, 252, 264, 292, 333, 345, 415, 424
Lsp1109I	GCAGC	3 cut(s)	25, 62, 394
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	182, 223, 241
MalI	GATC	2 cut(s)	78, 342
MboI	GATC	2 cut(s)	76, 340
MboII	GAAGA	2 cut(s)	146, 379
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	1 cut(s)	149
MnlI	CCTC	1 cut(s)	409
MspI	CCGG	4 cut(s)	251, 279, 332, 411
MwoI	GCNNNNNNNGC	4 cut(s)	22, 56, 104, 197
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	2 cut(s)	76, 340
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	441
NmuCI	GTSAC	2 cut(s)	182, 223
NspV	TTCGAA	2 cut(s)	132, 365
PkrI	GCNGC	3 cut(s)	15, 52, 409
PspPI	GGNCC	2 cut(s)	236, 350
SatI	GCNGC	3 cut(s)	14, 51, 408
Sau3AI	GATC	2 cut(s)	76, 340
Sau96I	GGNCC	2 cut(s)	236, 350
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	54
SfuI	TTCGAA	2 cut(s)	132, 365
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	200, 213
SspMI	CTAG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	4 cut(s)	75, 132, 153, 365
TasI	AATT	1 cut(s)	149
TseFI	GTSAC	2 cut(s)	182, 223
TseI	GCWGC	3 cut(s)	13, 50, 407
Tsp45I	GTSAC	2 cut(s)	182, 223
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.