Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018612.1

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

654 .. 3698

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgtcactgattttgggtttgggtggtgcaggcattgctgagattgatattgattttggggcatttggattttcaatcaggatgcgattgtatgagacgatagagatgagagtgcatatggactgccccggatgcgagagcaaggctagaaatagacatggccctgcagaaggtcacagtgaccaggtgggcaagggcaagagggttgtctttttgaagcagctttcttctggcttgcttttggtcactgggccatttaagattaatggtgttcctcttagacaggtgaaccaatcttatgttattggaacttcaaccaaggttgacagctctggtgttaacatggagaagtttgatgacaagtactttgccaaggagggtcaaaagaagaaaaagaagggagaaggcaagttctttgaagtggagaaggagactgacaagacggtgaaggtggcgagggaaggtggaaaggtggtcacaatagtaggtccagtaatgcctccggcgttcagatttgtgctcacccctacaggttctatcttggagaaactgaagccgtactcgggtagcaggaaggtgaagccagtgcttgatcccacaggtccatatcacttttataaagttgttgaagcacttggttaccttgagacttcaagagctacaggaaaggttgttgtgtaccccatcccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

230

Amino Acids

25.2

Weight (kDa)

9.6

Isoelectric Point (pI)

22.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AclWI	GGATC	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	3 cut(s)	365, 560, 680
AfiI	CCNNNNNNNGG	2 cut(s)	170, 563
AgsI	TTSAA	6 cut(s)	75, 217, 315, 419, 629, 654
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	223, 330, 659
AluI	AGCT	3 cut(s)	223, 330, 659
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	89, 425, 641
AlwI	GGATC	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	2 cut(s)	160, 251
ApeKI	GCWGC	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AseI	ATTAAT	1 cut(s)	264
AspS9I	GGNCC	4 cut(s)	161, 251, 488, 602
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	4 cut(s)	298, 457, 514, 589
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	488, 602
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	3 cut(s)	89, 425, 641
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	3 cut(s)	165, 528, 660
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	129, 185
Bme18I	GGWCC	2 cut(s)	488, 602
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	4 cut(s)	161, 251, 488, 602
BmrFI	CCNGG	2 cut(s)	129, 185
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	72, 122
BmuI	ACTGGG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	127, 318, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 563
Bse1I	ACTGG	3 cut(s)	253, 491, 584
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	3 cut(s)	127, 318, 372
BseGI	GGATG	3 cut(s)	87, 137, 684
BseLI	CCNNNNNNNGG	2 cut(s)	170, 563
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	3 cut(s)	253, 491, 584
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	162, 253
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	129, 503
BslI	CCNNNNNNNGG	2 cut(s)	170, 563
BsmAI	GTCTC	3 cut(s)	89, 425, 641
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	162, 253
BsoBI	CYCGRG	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	592
BspANI	GGCC	2 cut(s)	162, 253
BspCNI	CTCAG	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	3 cut(s)	253, 491, 584
BssECI	CCNNGG	3 cut(s)	127, 318, 372
BssMI	GATC	1 cut(s)	592
BssT1I	CCWWGG	2 cut(s)	318, 372
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	179, 445
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	31, 236
BstDEI	CTNAG	2 cut(s)	39, 278
BstEII	GGTNACC	1 cut(s)	638
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	87, 137, 684
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	3 cut(s)	89, 425, 641
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 132
BstNI	CCWGG	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	127, 183
BstSFI	CTRYAG	3 cut(s)	165, 528, 660
BstV1I	GCAGC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	162, 253
BtsCI	GGATG	3 cut(s)	87, 137, 684
BtsIMutI	CAGTG	4 cut(s)	5, 184, 246, 591
Cac8I	GCNNGC	2 cut(s)	31, 236
Cfr13I	GGNCC	4 cut(s)	161, 251, 488, 602
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	364, 559, 679
CviAII	CATG	3 cut(s)	158, 343, 690
CviJI	RGCY	9 cut(s)	146, 162, 223, 234, 253, 330, 556, 583, 659
CviKI_1	RGCY	9 cut(s)	146, 162, 223, 234, 253, 330, 556, 583, 659
CviQI	GTAC	3 cut(s)	364, 559, 679
DdeI	CTNAG	2 cut(s)	39, 278
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	318, 372
Eco47I	GGWCC	2 cut(s)	488, 602
Eco57I	CTGAAG	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	562
Eco91I	GGTNACC	1 cut(s)	638
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	2 cut(s)	318, 372
ErhI	CCWWGG	2 cut(s)	318, 372
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	3 cut(s)	161, 346, 693
FaiI	YATR	9 cut(s)	93, 117, 119, 159, 300, 344, 607, 618, 691
FatI	CATG	3 cut(s)	157, 342, 689
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	3 cut(s)	94, 144, 671
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	162, 253
HapII	CCGG	2 cut(s)	129, 503
Hin1II	CATG	3 cut(s)	161, 346, 693
HincII	GTYRAC	2 cut(s)	325, 340
HindII	GTYRAC	2 cut(s)	325, 340
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	129, 503
HphI	GGTGA	4 cut(s)	298, 457, 514, 589
Hpy166II	GTNNAC	4 cut(s)	289, 325, 340, 679
Hpy188I	TCNGA	1 cut(s)	512
Hpy188III	TCNNGA	2 cut(s)	79, 654
Hpy8I	GTNNAC	4 cut(s)	289, 325, 340, 679
HpyAV	CCTTC	7 cut(s)	164, 391, 398, 421, 442, 455, 568
HpyCH4III	ACNGT	2 cut(s)	179, 445
HpyCH4V	TGCA	3 cut(s)	29, 115, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 132
HpyF3I	CTNAG	2 cut(s)	39, 278
Hsp92II	CATG	3 cut(s)	161, 346, 693
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	72, 122
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	6 cut(s)	3, 173, 179, 244, 475, 638
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	2 cut(s)	219, 400
MhlI	GDGCHC	1 cut(s)	522
MnlI	CCTC	5 cut(s)	195, 285, 370, 450, 510
MseI	TTAA	3 cut(s)	258, 264, 339
MspI	CCGG	2 cut(s)	129, 503
MspR9I	CCNGG	2 cut(s)	129, 185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	35, 132
NciI	CCSGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	3 cut(s)	161, 346, 693
NmuCI	GTSAC	5 cut(s)	3, 173, 179, 244, 475
PkrI	GCNGC	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	183
PspPI	GGNCC	4 cut(s)	161, 251, 488, 602
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	3 cut(s)	365, 560, 680
RsaNI	GTAC	3 cut(s)	364, 559, 679
SaqAI	TTAA	3 cut(s)	258, 264, 339
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	4 cut(s)	161, 251, 488, 602
ScaI	AGTACT	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	129, 185
SduI	GDGCHC	1 cut(s)	522
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	2 cut(s)	72, 122
SfcI	CTRYAG	3 cut(s)	165, 528, 660
SinI	GGWCC	2 cut(s)	488, 602
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	127, 183
StyI	CCWWGG	2 cut(s)	318, 372
TaaI	ACNGT	2 cut(s)	179, 445
TatI	WGTACW	1 cut(s)	363
Tru1I	TTAA	3 cut(s)	258, 264, 339
Tru9I	TTAA	3 cut(s)	258, 264, 339
TscAI	CASTG	4 cut(s)	12, 184, 253, 591
TseFI	GTSAC	5 cut(s)	3, 173, 179, 244, 475
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	5 cut(s)	3, 173, 179, 244, 475
TspRI	CASTG	4 cut(s)	12, 184, 253, 591
VpaK11BI	GGWCC	2 cut(s)	488, 602
VspI	ATTAAT	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	168
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.