Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

86099882 .. 86101062

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG635600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTTGGCTCTCAAACCCAAAAACCTGAGCTTTATTGAAGCTGCTAGCCTTCCCTTAGCTATTGAGACTGCGTATGGAGCGCTTGAAAGAGCGGAGCTTTCGGCTGGTAAATCCGTCCTTGTTTTGGGAGGCGCTGGGGGTGTTGGGACACATGTGATTCAGCTAGCTAAGCATGTTTTCGGGGCTTCCAAAGTAGCAGCTACTGCAAGCACTAAAAAACTGGATTTGTTGAGAAGCTTGGGTGCGGATTTGGCTATCGATTACACCAAGGAGAACATTGAAGACCTGCCAGAGAAATTTGATGTAGTCTATGATGCAGTTGGGCAGACTGACAAGGCAGTGAAGGCGGTGAAGGAAGGTGGGAAGGTAGTCACAATAGTAGGTCCAGTAACTCCTCCGGCGTTCAGATTTGTGGCCACCCCTACAGGGTCTATCTTGGAGAAACTGAAGCCTTACTTGGAGAGCGAGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCCCTTTTCTAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCAAAAGCTACAGGAAAGGTGGTTGTGTACCCCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

195

Amino Acids

20.48

Weight (kDa)

8.6

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_dehyd_C	PF16912	20 - 119	8.3e-07	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	47 - 127	3.2e-15	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	80 - 191	2.2e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	92
AciI	CCGC	3 cut(s)	92, 245, 347
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	575
AfeI	AGCGCT	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	124, 426
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	38, 86, 281, 524, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	9 cut(s)	30, 41, 59, 97, 163, 167, 200, 237, 554
AluI	AGCT	9 cut(s)	30, 41, 59, 97, 163, 167, 200, 237, 554
Alw26I	GTCTC	2 cut(s)	59, 536
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	203
Aor51HI	AGCGCT	1 cut(s)	81
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	41, 197
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	82, 134
AspS9I	GGNCC	2 cut(s)	383, 497
AsuHPI	GGTGA	2 cut(s)	361, 484
AsuNHI	GCTAGC	2 cut(s)	44, 163
AvaII	GGWCC	2 cut(s)	383, 497
BalI	TGGCCA	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	28, 209
BccI	CCATC	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	59, 536
BfaI	CTAG	2 cut(s)	45, 164
BfmI	CTRYAG	2 cut(s)	423, 555
BfoI	RGCGCY	2 cut(s)	83, 135
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	42, 198
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	43, 199
Bme18I	GGWCC	2 cut(s)	383, 497
BmgT120I	GGNCC	2 cut(s)	383, 497
BmsI	GCATC	1 cut(s)	304
BmtI	GCTAGC	2 cut(s)	48, 167
BpiI	GAAGAC	1 cut(s)	288
Bpu10I	CCTNAGC	2 cut(s)	26, 55
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	560
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 426
Bse1I	ACTGG	3 cut(s)	225, 386, 479
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	124, 426
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	3 cut(s)	225, 386, 479
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	28, 209
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	124, 426
BsmAI	GTCTC	2 cut(s)	59, 536
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	487
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	92, 245, 347
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	294
BspOI	GCTAGC	2 cut(s)	48, 167
BspPI	GGATC	1 cut(s)	482
BsrBI	CCGCTC	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	225, 386, 479
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	46, 165, 208
BstDEI	CTNAG	3 cut(s)	26, 55, 168
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	579
BstH2I	RGCGCY	2 cut(s)	83, 135
BstHHI	GCGC	2 cut(s)	82, 134
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	2 cut(s)	59, 536
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 169, 203, 251, 344
BstNSI	RCATGY	2 cut(s)	155, 176
BstPI	GGTNACC	1 cut(s)	533
BstSFI	CTRYAG	2 cut(s)	423, 555
BstV1I	GCAGC	2 cut(s)	28, 209
BstV2I	GAAGAC	1 cut(s)	288
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	416
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 486
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	46, 165, 208
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	2 cut(s)	82, 134
Cfr13I	GGNCC	2 cut(s)	383, 497
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	3 cut(s)	152, 173, 585
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	3 cut(s)	26, 55, 168
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	383, 497
Eco47III	AGCGCT	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	467
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	155, 176, 588
FaiI	YATR	6 cut(s)	75, 153, 174, 312, 502, 586
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	151, 172, 584
Fnu4HI	GCNGC	2 cut(s)	42, 198
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	42, 198
FspBI	CTAG	2 cut(s)	45, 164
GlaI	GCGC	2 cut(s)	81, 133
GluI	GCNGC	2 cut(s)	42, 198
GsaI	CCCAGC	1 cut(s)	138
HaeII	RGCGCY	2 cut(s)	83, 135
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	2 cut(s)	82, 134
Hin1II	CATG	3 cut(s)	155, 176, 588
Hin6I	GCGC	2 cut(s)	80, 132
HinP1I	GCGC	2 cut(s)	80, 132
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	2 cut(s)	361, 484
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	1 cut(s)	407
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	6 cut(s)	59, 337, 346, 350, 358, 463
HpyCH4V	TGCA	2 cut(s)	206, 317
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 169, 203, 251, 344
HpyF3I	CTNAG	3 cut(s)	26, 55, 168
Hsp92II	CATG	3 cut(s)	155, 176, 588
HspAI	GCGC	2 cut(s)	80, 132
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	2 cut(s)	77, 94
Lsp1109I	GCAGC	2 cut(s)	28, 209
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	45, 164
MaeIII	GTNAC	3 cut(s)	370, 388, 533
MalI	GATC	1 cut(s)	489
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	2 cut(s)	122, 405
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	5 cut(s)	77, 169, 203, 251, 344
NdeII	GATC	1 cut(s)	487
NheI	GCTAGC	2 cut(s)	44, 163
NlaIII	CATG	3 cut(s)	155, 176, 588
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	2 cut(s)	155, 176
PciI	ACATGT	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	43, 199
PscI	ACATGT	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	383, 497
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SatI	GCNGC	2 cut(s)	42, 198
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	2 cut(s)	383, 497
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	2 cut(s)	423, 555
SinI	GGWCC	2 cut(s)	383, 497
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	92, 245, 347
SspMI	CTAG	2 cut(s)	45, 164
StyI	CCWWGG	1 cut(s)	267
TaqI	TCGA	1 cut(s)	258
TasI	AATT	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	2 cut(s)	345, 486
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	41, 197
Tsp45I	GTSAC	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	345, 486
VpaK11BI	GGWCC	2 cut(s)	383, 497
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	2 cut(s)	155, 176
XspI	CTAG	2 cut(s)	45, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.