Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Forward (+)

61616946 .. 61622260

Gene Structure 5315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33441

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTCACTGATTTTGGGTTTGGGTGGTGCGGTAGTTGCTGAGATTGATATTGATTTTGGGGCATTTGGATTTTCAATCAGGATGAGAGCAGTATCGAAATTGTCTGAGACGATAGAGATTAGAGTGCATATAGACTTCCCCGGGTGCGAGAGCAAGGTTAGAAGTACACTTCAGAAGCTAAAAGGTATTGACAATGTTGAGATAGACATGGCTTTGCAGAAGGTCACAGTGACCGGGTGGGCAAGGGCAAGAGGGTTGTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

88

Amino Acids

9.58

Weight (kDa)

7.92

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	48 - 79	2.2e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	140
AsuC2I	CCSGG	3 cut(s)	141, 142, 235
AvaI	CYCGRG	1 cut(s)	140
BcnI	CCSGG	3 cut(s)	141, 142, 235
BcoDI	GTCTC	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	141, 142, 235
BmeT110I	CYCGRG	1 cut(s)	140
BmrFI	CCNGG	3 cut(s)	141, 142, 235
BpuMI	CCSGG	3 cut(s)	141, 142, 235
BsaJI	CCNNGG	2 cut(s)	139, 140
BseDI	CCNNGG	2 cut(s)	139, 140
BseGI	GGATG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	30, 96
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	141, 234
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	140
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	31, 97
BssECI	CCNNGG	2 cut(s)	139, 140
Bst4CI	ACNGT	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	39, 105
BstF5I	GGATG	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSCI	CCNGG	3 cut(s)	139, 140, 233
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	5, 234
Cfr9I	CCCGGG	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	2 cut(s)	178, 212
CviKI_1	RGCY	2 cut(s)	178, 212
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	39, 105
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	211
FaiI	YATR	3 cut(s)	129, 131, 209
FatI	CATG	1 cut(s)	207
FokI	GGATG	1 cut(s)	94
HapII	CCGG	2 cut(s)	141, 234
Hin1II	CATG	1 cut(s)	211
HpaII	CCGG	2 cut(s)	141, 234
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	106, 174
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	127, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	39, 105
Hsp92II	CATG	1 cut(s)	211
LpnPI	CCDG	3 cut(s)	64, 154, 247
MaeIII	GTNAC	3 cut(s)	3, 223, 229
MluCI	AATT	1 cut(s)	98
MnlI	CCTC	1 cut(s)	245
MspI	CCGG	2 cut(s)	141, 234
MspR9I	CCNGG	3 cut(s)	141, 142, 235
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	3 cut(s)	141, 142, 235
NlaIII	CATG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	3, 223, 229
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
ScrFI	CCNGG	3 cut(s)	141, 142, 235
SetI	ASST	4 cut(s)	159, 180, 187, 225
SmaI	CCCGGG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	139, 140, 233
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	164
TscAI	CASTG	2 cut(s)	12, 234
TseFI	GTSAC	3 cut(s)	3, 223, 229
Tsp45I	GTSAC	3 cut(s)	3, 223, 229
TspMI	CCCGGG	1 cut(s)	140
TspRI	CASTG	2 cut(s)	12, 234
XmaI	CCCGGG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.