Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Forward (+)

40696242 .. 40697633

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACAACGATAGAGATGAGAGTGCATATGGACTTCCCCGGATGCAAGAGCAAGGTTAGAAGTACACTTCAGAAGCTAAAAGATACGTCAATTCGGGAAGGTCATAGTGACTGGGTGGGCAAGGGAAAGAGGGTTGTCTTTTTGAAGCAGCTTTCTTCTGGCTTGCTTTTGGTCACTGGGCCATTTAAGATTAATGGTGTTCCTCTTAGACGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACAGCTCTGGTGTTAACGTGGAGAAGTTTGATGACGAGCACTTTTCCAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGTGGAGAAGGAGGTGCTTCGATTCTTTTTTCCGATGAGGGATGACTTGCCACTCAAGGCTTCCTCCTCACAAGCAAAGATATGTTTTATAAAGCCTACTCCAAGTTCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

153

Amino Acids

17.31

Weight (kDa)

9.81

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	64 - 120	1.2e-18	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	145, 243, 347, 456
AluBI	AGCT	3 cut(s)	76, 151, 258
AluI	AGCT	3 cut(s)	76, 151, 258
Alw21I	GWGCWC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	2 cut(s)	121, 186
BmsI	GCATC	1 cut(s)	32
BmuI	ACTGGG	2 cut(s)	121, 186
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	37, 246, 300
Bse1I	ACTGG	2 cut(s)	116, 181
BseDI	CCNNGG	3 cut(s)	37, 246, 300
BseGI	GGATG	2 cut(s)	47, 394
BseNI	ACTGG	2 cut(s)	116, 181
BseRI	GAGGAG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	39
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	116, 181
BssECI	CCNNGG	3 cut(s)	37, 246, 300
BssT1I	CCWWGG	2 cut(s)	246, 300
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	47, 394
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	47, 394
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	63
CviJI	RGCY	7 cut(s)	76, 151, 162, 181, 258, 407, 442
CviKI_1	RGCY	7 cut(s)	76, 151, 162, 181, 258, 407, 442
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	246, 300
Eco57I	CTGAAG	1 cut(s)	53
EcoT14I	CCWWGG	2 cut(s)	246, 300
ErhI	CCWWGG	2 cut(s)	246, 300
FaiI	YATR	6 cut(s)	27, 29, 105, 228, 430, 437
FauNDI	CATATG	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	54, 401
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	253, 268
HindII	GTYRAC	2 cut(s)	253, 268
HinfI	GANTC	1 cut(s)	369
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	4 cut(s)	65, 217, 253, 268
Hpy188I	TCNGA	2 cut(s)	72, 381
Hpy188III	TCNNGA	2 cut(s)	95, 456
Hpy8I	GTNNAC	4 cut(s)	65, 217, 253, 268
HpyAV	CCTTC	4 cut(s)	92, 319, 326, 349
HpyCH4IV	ACGT	2 cut(s)	86, 270
HpyCH4V	TGCA	2 cut(s)	25, 45
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	2 cut(s)	86, 270
KspAI	GTTAAC	1 cut(s)	268
LpnPI	CCDG	5 cut(s)	52, 97, 144, 162, 246
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	32
MaeII	ACGT	2 cut(s)	86, 270
MaeIII	GTNAC	2 cut(s)	107, 172
MboII	GAAGA	2 cut(s)	147, 328
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	7 cut(s)	123, 213, 298, 352, 378, 421, 424
MseI	TTAA	3 cut(s)	186, 192, 267
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	39
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	107, 172
PfeI	GAWTC	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	150
PshBI	ATTAAT	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	186, 192, 267
SatI	GCNGC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	9 cut(s)	57, 78, 89, 103, 153, 252, 260, 273, 363
SfaNI	GCATC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	246, 300
TaiI	ACGT	2 cut(s)	89, 273
TaqI	TCGA	1 cut(s)	367
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	3 cut(s)	186, 192, 267
Tru9I	TTAA	3 cut(s)	186, 192, 267
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	107, 172
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	2 cut(s)	107, 172
TspRI	CASTG	1 cut(s)	181
VspI	ATTAAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.