Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

80044823 .. 80048199

Gene Structure 3377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACAAAAGGAGAGCAAATAAAGAAGGGAGTTCCAAGGGGAAGGACACTACAATCAGAGACCAAGTTTCAGTGCTATGAACCTGCAACCATGAAATACTTTGGATATTACCATGCATTGACACCTGATGAGGTCAAGGAGCGGGTAGCGCTAGCAAGGAAGGCGCAAAAAACATCGGCAAAGATCAAGCAAAGACGCATACATGGCTCTGCAGAAGGTCACAGTGACCAGGTGGGCAAGGGCAAGAGGGTTGTCTTTTTGAAGCAGCTTTCTTCTGGCTTGCTTTTGGTCACTGGGCCATTTAAGATTAATGGTGTTCCTCTTAGACAGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACAGCTCTGGTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTGCCAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCAAGTTCTTTGAAGTGGAGAAGGAGCTGAGCTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

164

Amino Acids

18.25

Weight (kDa)

9.92

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	103 - 159	2.3e-18	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	410
AfeI	AGCGCT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	262, 360, 464
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	4 cut(s)	268, 375, 478, 483
AluI	AGCT	4 cut(s)	268, 375, 478, 483
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AseI	ATTAAT	1 cut(s)	309
AspLEI	GCGC	2 cut(s)	151, 166
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	267
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	303
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	303
BplI	GAGNNNNNCTC	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	35, 363, 417
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	35, 363, 417
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	479
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	471
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	35, 363, 417
BssMI	GATC	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	35, 363, 417
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	153, 281
BstDEI	CTNAG	2 cut(s)	323, 479
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 166
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 161, 204
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	77, 229, 291
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	153, 281
CfoI	GCGC	2 cut(s)	151, 166
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	204
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	91, 113, 203
CviJI	RGCY	7 cut(s)	207, 268, 279, 298, 375, 478, 483
CviKI_1	RGCY	7 cut(s)	207, 268, 279, 298, 375, 478, 483
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	323, 479
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	483
Eco130I	CCWWGG	3 cut(s)	35, 363, 417
Eco24I	GRGCYC	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	53
Eco47III	AGCGCT	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	3 cut(s)	35, 363, 417
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	485
ErhI	CCWWGG	3 cut(s)	35, 363, 417
FaeI	CATG	3 cut(s)	94, 116, 206
FaiI	YATR	6 cut(s)	78, 92, 114, 200, 204, 345
FatI	CATG	3 cut(s)	90, 112, 202
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	2 cut(s)	150, 165
GluI	GCNGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	298
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	2 cut(s)	151, 166
Hin1II	CATG	3 cut(s)	94, 116, 206
Hin6I	GCGC	2 cut(s)	149, 164
HinP1I	GCGC	2 cut(s)	149, 164
HincII	GTYRAC	2 cut(s)	370, 385
HindII	GTYRAC	2 cut(s)	370, 385
HpaI	GTTAAC	1 cut(s)	385
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	334, 370, 385
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	489
Hpy8I	GTNNAC	3 cut(s)	334, 370, 385
HpyAV	CCTTC	7 cut(s)	19, 36, 154, 209, 436, 443, 466
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	86, 116, 212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 161, 204
HpyF3I	CTNAG	2 cut(s)	323, 479
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	94, 116, 206
HspAI	GCGC	2 cut(s)	149, 164
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	139, 475
LpnPI	CCDG	8 cut(s)	96, 138, 215, 242, 261, 279, 314, 363
Lsp1109I	GCAGC	1 cut(s)	277
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	218, 224, 289
MalI	GATC	1 cut(s)	185
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	1 cut(s)	183
MboII	GAAGA	3 cut(s)	264, 445, 477
MhlI	GDGCHC	1 cut(s)	485
MnlI	CCTC	4 cut(s)	124, 240, 330, 415
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	3 cut(s)	303, 309, 384
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	148, 161, 204
NdeII	GATC	1 cut(s)	183
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	94, 116, 206
NmuCI	GTSAC	3 cut(s)	218, 224, 289
NsiI	ATGCAT	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	267
PshBI	ATTAAT	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	485
SaqAI	TTAA	3 cut(s)	303, 309, 384
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	485
SexAI	ACCWGGT	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	210
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	3 cut(s)	35, 363, 417
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	390
TatI	WGTACW	1 cut(s)	408
Tru1I	TTAA	3 cut(s)	303, 309, 384
Tru9I	TTAA	3 cut(s)	303, 309, 384
TscAI	CASTG	3 cut(s)	77, 229, 298
TseFI	GTSAC	3 cut(s)	218, 224, 289
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	3 cut(s)	218, 224, 289
TspDTI	ATGAA	2 cut(s)	93, 107
TspRI	CASTG	3 cut(s)	77, 229, 298
VspI	ATTAAT	1 cut(s)	309
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.