Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

36074629 .. 36075345

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAACGGGGGTGCTCTGTTTATGACTTTTCTAGAAGATCATCCTAAGGAGTATTGGTCATATGCCTATTTTAAGGGCAATCGATATGGTGAAATGTGTAACAAAGTTTCTGGATCGTTTAGTTCTTGGATTTTGGAGCTGTGCACTTTGCCTATCTGTCAAATGGTTGATGGCATCAGGATTAAGCTCATGGCATTCATGGCTGAAAAACGTTGTGAAGCAGAGGAATGGAGTTCTGTTTTTTGTCCTGAGATGGAGAAAACCTTGAACAACAACTTGATGGTCTGTAGGAATTGGAAGGCTTATCGTTCTAGTCAATCTGTTTTTGAAGTTCATGCTGAATATTCTGTGATGGTTGATTTGGATAATCGTTTCTGCTCATGTCATGAGTGGCAGATAAAAGGCTTTCCCTGTGCTCATGCACTAGTTGCTATTCAGAAAAATAACTGGTGCATTTATGATTATGTTGATGATTACTTCAAGTCAAGCTACTTTAGAAGTTCATGTGCTACTCTTATGTCTCCCATACCTGACATTAGGAATGTGATGCATGAGATCCCAGACGACGTTGTCATCATGCCTCCGCTTGCTAAGAGGCGTCCAGGTAGGCCAAAGAATAAAATGGCTGAATCTATTGGTCAAGTTTCAAAAGTCAGAAATTCTAGTCGATGTGGTGTGGTTGGAAAGCATAATAAGAAGTGTACTGCAAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

238

Amino Acids

27.44

Weight (kDa)

8.51

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	115 - 147	1.8e-09	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AciI	CCGC	1 cut(s)	584
AclI	AACGTT	1 cut(s)	211
AclWI	GGATC	2 cut(s)	121, 550
AcsI	RAATTY	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	598
AfaI	GTAC	1 cut(s)	703
AgsI	TTSAA	4 cut(s)	268, 329, 481, 648
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	3 cut(s)	139, 187, 489
AluI	AGCT	3 cut(s)	139, 187, 489
Alw21I	GWGCWC	3 cut(s)	16, 146, 418
Alw26I	GTCTC	1 cut(s)	525
Alw44I	GTGCAC	1 cut(s)	142
AlwI	GGATC	2 cut(s)	121, 550
AoxI	GGCC	1 cut(s)	608
ApaLI	GTGCAC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	658
AsuHPI	GGTGA	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	146
Bbv12I	GWGCWC	3 cut(s)	16, 146, 418
BccI	CCATC	4 cut(s)	164, 247, 274, 346
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	525
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	4 cut(s)	32, 312, 425, 663
BfmI	CTRYAG	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	2 cut(s)	183, 537
Bsa29I	ATCGAT	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse1I	ACTGG	1 cut(s)	452
Bse21I	CCTNAGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	603
BseCI	ATCGAT	1 cut(s)	82
BseGI	GGATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	610
BshVI	ATCGAT	1 cut(s)	82
BsiHKAI	GWGCWC	3 cut(s)	16, 146, 418
BsmAI	GTCTC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	16, 146, 418
Bsp143I	GATC	3 cut(s)	37, 113, 555
BspACI	CCGC	1 cut(s)	584
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	385
BspPI	GGATC	2 cut(s)	121, 550
BsrI	ACTGG	1 cut(s)	452
BssMI	GATC	3 cut(s)	37, 113, 555
BssNI	GRCGYC	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	3 cut(s)	45, 249, 591
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	3 cut(s)	40, 116, 558
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	3 cut(s)	37, 113, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 428
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
Bsu15I	ATCGAT	1 cut(s)	82
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	610
BsuTUI	ATCGAT	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	588
CciI	TCATGA	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	82
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	702
CviAII	CATG	9 cut(s)	190, 199, 335, 381, 386, 419, 504, 551, 577
CviJI	RGCY	8 cut(s)	139, 187, 203, 302, 405, 489, 610, 626
CviKI_1	RGCY	8 cut(s)	139, 187, 203, 302, 405, 489, 610, 626
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	3 cut(s)	45, 249, 591
DpnI	GATC	3 cut(s)	39, 115, 557
DpnII	GATC	3 cut(s)	37, 113, 555
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
Eco81I	CCTNAGG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	601
EcoT22I	ATGCAT	1 cut(s)	552
FaeI	CATG	9 cut(s)	193, 202, 338, 384, 389, 422, 507, 554, 580
FatI	CATG	9 cut(s)	189, 198, 334, 380, 385, 418, 503, 550, 576
FauNDI	CATATG	1 cut(s)	61
FokI	GGATG	1 cut(s)	27
FspBI	CTAG	4 cut(s)	32, 312, 425, 663
HaeIII	GGCC	1 cut(s)	610
HgaI	GACGC	1 cut(s)	587
Hin1I	GRCGYC	1 cut(s)	598
Hin1II	CATG	9 cut(s)	193, 202, 338, 384, 389, 422, 507, 554, 580
HinfI	GANTC	1 cut(s)	629
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	144, 702
Hpy188I	TCNGA	3 cut(s)	438, 656, 716
Hpy188III	TCNNGA	5 cut(s)	32, 111, 178, 248, 386
Hpy8I	GTNNAC	2 cut(s)	144, 702
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	211, 567
HpyCH4V	TGCA	5 cut(s)	144, 422, 453, 550, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 428
HpyF3I	CTNAG	3 cut(s)	45, 249, 591
HpySE526I	ACGT	2 cut(s)	211, 567
Hsp92I	GRCGYC	1 cut(s)	598
Hsp92II	CATG	9 cut(s)	193, 202, 338, 384, 389, 422, 507, 554, 580
Kzo9I	GATC	3 cut(s)	37, 113, 555
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	9 cut(s)	96, 163, 261, 424, 433, 543, 573, 588, 615
LweI	GCATC	2 cut(s)	183, 537
MaeI	CTAG	4 cut(s)	32, 312, 425, 663
MaeII	ACGT	2 cut(s)	211, 567
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	39, 115, 557
MboI	GATC	3 cut(s)	37, 113, 555
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	3 cut(s)	16, 146, 418
MluCI	AATT	2 cut(s)	292, 658
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	3 cut(s)	217, 588, 591
Mph1103I	ATGCAT	1 cut(s)	552
MseI	TTAA	2 cut(s)	72, 183
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	2 cut(s)	200, 428
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	37, 113, 555
NlaIII	CATG	9 cut(s)	193, 202, 338, 384, 389, 422, 507, 554, 580
NsiI	ATGCAT	1 cut(s)	552
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	629
PflFI	GACNNNGTC	1 cut(s)	569
Psp1406I	AACGTT	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	555
PsyI	GACNNNGTC	1 cut(s)	569
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	72, 183
Sau3AI	GATC	3 cut(s)	37, 113, 555
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	3 cut(s)	16, 146, 418
SetI	ASST	8 cut(s)	141, 189, 214, 266, 491, 532, 570, 607
SfaNI	GCATC	2 cut(s)	183, 537
SfcI	CTRYAG	1 cut(s)	286
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	2 cut(s)	292, 658
SsiI	CCGC	1 cut(s)	584
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	4 cut(s)	32, 312, 425, 663
StyD4I	CCNGG	1 cut(s)	601
TaiI	ACGT	2 cut(s)	214, 570
TaqI	TCGA	2 cut(s)	82, 667
TasI	AATT	2 cut(s)	292, 658
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	72, 183
Tru9I	TTAA	2 cut(s)	72, 183
TspDTI	ATGAA	4 cut(s)	17, 187, 323, 492
Tth111I	GACNNNGTC	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	658
XbaI	TCTAGA	1 cut(s)	31
XspI	CTAG	4 cut(s)	32, 312, 425, 663
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.