Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Forward (+)

63624666 .. 63625692

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG401900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATAGAGATGAGAGTGCATATAGACTGCCCCGGATGCGAGAGCAAGGTTAGAAGTATACTTCAGAAGCTAAAACGGCCATTTATGATTAATGGTGTTCCTCTTAGACGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGATTAACATCTTTGGTGTTAACGTGGAGAAATTTGATGACAAGTCCTTTGCCAAGGAGGGTCAAAAGAAAAAAAGAAGGGACAAGGCGAGTTCTTTGAAGTGGAGAAGGAGGTTTTTCGATTCTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

92

Amino Acids

10.89

Weight (kDa)

10.38

Isoelectric Point (pI)

80.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	30 - 77	4.9e-15	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	141, 244
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AoxI	GGCC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AseI	ATTAAT	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	31, 198
Bse8I	GATNNNNATC	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	31, 198
BseGI	GGATG	1 cut(s)	41
BseJI	GATNNNNATC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	31, 198
BssNAI	GTATAC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	198
Bst1107I	GTATAC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 76
BstSCI	CCNGG	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	41
CviJI	RGCY	2 cut(s)	70, 79
CviKI_1	RGCY	2 cut(s)	70, 79
DdeI	CTNAG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaiI	YATR	5 cut(s)	21, 23, 59, 86, 126
FaqI	GGGAC	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	58
FokI	GGATG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	266
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	3 cut(s)	59, 115, 166
Hpy188I	TCNGA	2 cut(s)	66, 278
Hpy8I	GTNNAC	3 cut(s)	59, 115, 166
HpyAV	CCTTC	2 cut(s)	216, 246
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 76
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	168
KspAI	GTTAAC	1 cut(s)	166
LpnPI	CCDG	1 cut(s)	46
LweI	GCATC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	168
MluCI	AATT	1 cut(s)	176
MnlI	CCTC	3 cut(s)	111, 196, 249
MseI	TTAA	3 cut(s)	90, 150, 165
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	36, 76
NciI	CCSGG	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	90, 150, 165
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	4 cut(s)	51, 72, 171, 260
SfaNI	GCATC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	3 cut(s)	90, 150, 165
Tru9I	TTAA	3 cut(s)	90, 150, 165
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.